Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0629100 Oryza sativa ssp. japonica HOM05D001797 ORTHO05D001650 3.6e-168 595.1 371 100.0
Zm00001eb166490 Zea mays HOM05D001797 ORTHO05D001650 7.2e-31 139.0 352 48.3
Zm00001eb019860 Zea mays HOM05D001797 ORTHO05D001650 4.5e-17 93.2 77 51.9
Zm00001eb327160 Zea mays HOM05D001797 ORTHO05D001650 2.2e-16 90.9 84 48.8
Zm00001eb108730 Zea mays HOM05D037261 ORTHO05D001650 1.1e-15 88.6 84 50.0
Os03g0412300 Oryza sativa ssp. japonica HOM05D001797 ORTHO05D001650 3.2e-15 87.0 85 47.1
Aqoxy4G01882 Aquilegia oxysepala HOM05D001797 ORTHO05D001650 7.9e-14 82.4 77 50.6
Os04g0401000 Oryza sativa ssp. japonica HOM05D013577 ORTHO05D030350 3.0e-13 80.5 71 52.1
Os10g0207700 Oryza sativa ssp. japonica HOM05D013577 ORTHO05D001650 2.6e-12 77.4 77 49.4
HPP92_012208 Vanilla planifolia HOM05D029139 ORTHO05D001650 3.3e-12 77.0 86 44.2
HPP92_012241 Vanilla planifolia HOM05D029139 ORTHO05D001650 5.7e-12 76.3 76 46.1
Os07g0682000 Oryza sativa ssp. japonica HOM05D053677 ORTHO05D050076 7.4e-12 75.9 84 42.9
Os03g0751600 Oryza sativa ssp. japonica HOM05D013577 ORTHO05D001650 2.8e-11 73.9 74 45.9
Zm00001eb216700 Zea mays HOM05D000737 ORTHO05D015469 3.7e-11 73.6 79 40.5
Aqoxy1G04251 Aquilegia oxysepala HOM05D001797 ORTHO05D001650 4.8e-11 73.2 76 48.7
Os04g0401100 Oryza sativa ssp. japonica HOM05D013577 ORTHO05D030350 1.6e-09 68.2 70 44.3
PSO541G2121 Papaver somniferum HOM05D001797 ORTHO05D001650 3.5e-09 67.0 72 47.2
TAR624G0736 Trochodendron aralioides HOM05D001797 ORTHO05D001650 4.5e-09 66.6 74 44.6
Zm00001eb421540 Zea mays HOM05D013577 ORTHO05D001650 4.5e-09 66.6 71 40.8
Glyma.17G006300 Glycine max HOM05D001797 ORTHO05D001650 5.9e-09 66.2 79 45.6
PSO675G8410 Papaver somniferum HOM05D001797 ORTHO05D001650 5.9e-09 66.2 72 47.2
TWI38G1105 Tripterygium wilfordii HOM05D001797 ORTHO05D001650 5.9e-09 66.2 84 40.5
Actinidia35737 Actinidia chinensis HOM05D001797 ORTHO05D001650 7.7e-09 65.9 108 35.2
FAN14G5464 Fragaria x ananassa HOM05D001797 ORTHO05D001650 7.7e-09 65.9 146 30.8
Oeu052859.1 Olea europaea HOM05D001797 ORTHO05D001650 7.7e-09 65.9 93 38.7
TAR624G0157 Trochodendron aralioides HOM05D001797 ORTHO05D001650 7.7e-09 65.9 71 45.1
FAN25G2435 Fragaria x ananassa HOM05D001797 ORTHO05D001650 1.0e-08 65.5 80 41.2
Zm00001eb057470 Zea mays HOM05D013577 ORTHO05D001650 1.0e-08 65.5 74 43.2
Prupe.4G005100 Prunus persica HOM05D001797 ORTHO05D001650 1.3e-08 65.1 71 50.7
TWI38G0899 Tripterygium wilfordii HOM05D001797 ORTHO05D001650 1.7e-08 64.7 84 40.5
FAN25G0318 Fragaria x ananassa HOM05D001797 ORTHO05D001650 2.2e-08 64.3 75 41.3
TWI38G0564 Tripterygium wilfordii HOM05D001797 ORTHO05D001650 2.2e-08 64.3 88 38.6
TWI63G1582 Tripterygium wilfordii HOM05D001797 ORTHO05D001650 2.2e-08 64.3 88 39.8
Actinidia23513 Actinidia chinensis HOM05D001797 ORTHO05D001650 2.9e-08 63.9 79 41.8
MBI19_g11108_MAGBIO Magnolia biondii HOM05D001797 ORTHO05D001650 2.9e-08 63.9 68 48.5
MBI19_g41118_MAGBIO Magnolia biondii HOM05D001797 ORTHO05D001650 2.9e-08 63.9 68 48.5
TAR624G0994 Trochodendron aralioides HOM05D001797 ORTHO05D001650 2.9e-08 63.9 71 45.1
CiPaw.10G081000 Carya illinoinensis HOM05D001797 ORTHO05D001650 3.8e-08 63.5 74 47.3
DCAR_030844 Daucus carota HOM05D001797 ORTHO05D001650 3.8e-08 63.5 79 44.3
ECA247G2176 Erigeron canadensis HOM05D001797 ORTHO05D001650 3.8e-08 63.5 86 38.4
RcHm_v2.0_Chr5g0000621 Rosa chinensis HOM05D001797 ORTHO05D001650 3.8e-08 63.5 74 41.9
FAN02G3978 Fragaria x ananassa HOM05D001797 ORTHO05D001650 5.0e-08 63.2 122 33.6
FAN03G0520 Fragaria x ananassa HOM05D001797 ORTHO05D001650 5.0e-08 63.2 122 33.6
FAN05G0358 Fragaria x ananassa HOM05D001797 ORTHO05D001650 5.0e-08 63.2 122 33.6
FAN05G0669 Fragaria x ananassa HOM05D001797 ORTHO05D001650 5.0e-08 63.2 122 33.6
FAN05G4551 Fragaria x ananassa HOM05D001797 ORTHO05D001650 5.0e-08 63.2 122 33.6
FAN06G3990 Fragaria x ananassa HOM05D001797 ORTHO05D001650 5.0e-08 63.2 122 33.6
FAN08G2964 Fragaria x ananassa HOM05D001797 ORTHO05D001650 5.0e-08 63.2 122 33.6
FAN15G3701 Fragaria x ananassa HOM05D001797 ORTHO05D001650 5.0e-08 63.2 122 33.6
FAN16G3637 Fragaria x ananassa HOM05D001797 ORTHO05D001650 5.0e-08 63.2 122 33.6
FAN21G3005 Fragaria x ananassa HOM05D001797 ORTHO05D001650 5.0e-08 63.2 73 42.5
FAN24G0943 Fragaria x ananassa HOM05D001797 ORTHO05D001650 5.0e-08 63.2 122 33.6
FAN26G1410 Fragaria x ananassa HOM05D001797 ORTHO05D001650 5.0e-08 63.2 122 33.6
FAN27G0715 Fragaria x ananassa HOM05D001797 ORTHO05D001650 5.0e-08 63.2 122 33.6
FAN27G3366 Fragaria x ananassa HOM05D001797 ORTHO05D001650 5.0e-08 63.2 122 33.6
FAN28G0889 Fragaria x ananassa HOM05D001797 ORTHO05D001650 5.0e-08 63.2 122 33.6
MD10G1337500 Malus domestica HOM05D001797 ORTHO05D001650 5.0e-08 63.2 80 42.5
RcHm_v2.0_Chr1g0347351 Rosa chinensis HOM05D001797 ORTHO05D001650 5.0e-08 63.2 87 39.1
Sed0015976 Sechium edule HOM05D001797 ORTHO05D001650 5.0e-08 63.2 80 41.2
TAR624G1419 Trochodendron aralioides HOM05D001797 ORTHO05D001650 5.0e-08 63.2 74 40.5
CSS0000720 Camellia sinensis var. sinensis HOM05D001797 ORTHO05D001650 6.5e-08 62.8 79 38.0
CSS0035696 Camellia sinensis var. sinensis HOM05D001797 ORTHO05D001650 6.5e-08 62.8 83 39.8
Cc09_g00440 Coffea canephora HOM05D001797 ORTHO05D001650 6.5e-08 62.8 79 40.5
FAN08G1118 Fragaria x ananassa HOM05D001797 ORTHO05D001650 6.5e-08 62.8 96 34.4
FAN13G2605 Fragaria x ananassa HOM05D001797 ORTHO05D001650 6.5e-08 62.8 96 34.4
Zm00001eb214820 Zea mays HOM05D013577 ORTHO05D001650 6.5e-08 62.8 74 43.2
MBI19_g31739_MAGBIO Magnolia biondii HOM05D001797 ORTHO05D001650 8.5e-08 62.4 78 41.0
MD05G1360500 Malus domestica HOM05D001797 ORTHO05D001650 8.5e-08 62.4 74 43.2
Os04g0400800 Oryza sativa ssp. japonica HOM05D013577 ORTHO05D030350 8.5e-08 62.4 85 37.6
Actinidia23515 Actinidia chinensis HOM05D001797 ORTHO05D001650 1.1e-07 62.0 79 41.8
Actinidia23516 Actinidia chinensis HOM05D001797 ORTHO05D001650 1.1e-07 62.0 79 41.8
Ah.14g087420 Amaranthus hybridus HOM05D001797 ORTHO05D001650 1.1e-07 62.0 86 33.7
Cc00_g26060 Coffea canephora HOM05D001797 ORTHO05D001650 1.1e-07 62.0 78 41.0
TAR375G1050 Trochodendron aralioides HOM05D001797 ORTHO05D001650 1.1e-07 62.0 74 41.9
CSS0032208 Camellia sinensis var. sinensis HOM05D001797 ORTHO05D001650 1.5e-07 61.6 79 38.0
CSS0044052 Camellia sinensis var. sinensis HOM05D001797 ORTHO05D001650 1.5e-07 61.6 86 34.9
Gohir.D06G163000 Gossypium hirsutum HOM05D001797 ORTHO05D001650 1.5e-07 61.6 72 40.3
RcHm_v2.0_Chr1g0328811 Rosa chinensis HOM05D001797 ORTHO05D001650 1.5e-07 61.6 83 39.8
unitig_749.g13617 Utricularia gibba HOM05D001797 ORTHO05D001650 1.5e-07 61.6 78 41.0
CDE04G1610 Ceratophyllum demersum HOM05D001797 ORTHO05D001650 1.9e-07 61.2 76 40.8
FvH4_3g00443 Fragaria vesca HOM05D001797 ORTHO05D001650 1.9e-07 61.2 75 40.0
Gohir.D05G178900 Gossypium hirsutum HOM05D001797 ORTHO05D001650 1.9e-07 61.2 72 47.2
Gorai.009G184400 Gossypium raimondii HOM05D001797 ORTHO05D001650 1.9e-07 61.2 72 47.2
HanXRQChr05g0129061 Helianthus annuus HOM05D001797 ORTHO05D001650 1.9e-07 61.2 78 38.5
MD08G1234400 Malus domestica HOM05D001797 ORTHO05D001650 1.9e-07 61.2 77 36.4
MD10G1337900 Malus domestica HOM05D001797 ORTHO05D001650 1.9e-07 61.2 70 45.7
Prupe.4G004900 Prunus persica HOM05D001797 ORTHO05D001650 1.9e-07 61.2 70 47.1
Sabra16G0011400 Salix brachista HOM05D001797 ORTHO05D001650 1.9e-07 61.2 79 41.8
VMungo1215G2802 Vigna mungo HOM05D001797 ORTHO05D001650 1.9e-07 61.2 79 41.8
Actinidia01445 Actinidia chinensis HOM05D001797 ORTHO05D001650 2.5e-07 60.8 77 40.3
FvH4_3g00445 Fragaria vesca HOM05D001797 ORTHO05D001650 2.5e-07 60.8 74 40.5
Lj6g0019164 Lotus japonicus HOM05D001797 ORTHO05D001650 2.5e-07 60.8 76 42.1
RcHm_v2.0_Chr1g0347291 Rosa chinensis HOM05D001797 ORTHO05D001650 2.5e-07 60.8 84 40.5
Cc07_g18170 Coffea canephora HOM05D001797 ORTHO05D001650 3.2e-07 60.5 72 45.8
FvH4_3g00441 Fragaria vesca HOM05D001797 ORTHO05D001650 3.2e-07 60.5 87 34.5
CSS0036445 Camellia sinensis var. sinensis HOM05D001797 ORTHO05D001650 4.2e-07 60.1 88 36.4
AUR62021820 Chenopodium quinoa HOM05D001797 ORTHO05D001650 4.2e-07 60.1 88 37.5
Gohir.A05G175900 Gossypium hirsutum HOM05D001797 ORTHO05D001650 4.2e-07 60.1 77 39.0
Gohir.A06G156701 Gossypium hirsutum HOM05D001797 ORTHO05D001650 4.2e-07 60.1 72 40.3
MD10G1338100 Malus domestica HOM05D001797 ORTHO05D001650 4.2e-07 60.1 70 44.3
Os07g0606900 Oryza sativa ssp. japonica HOM05D037261 ORTHO05D001650 4.2e-07 60.1 57 47.4
TWI63G0580 Tripterygium wilfordii HOM05D001797 ORTHO05D001650 4.2e-07 60.1 75 38.7
CSS0039099 Camellia sinensis var. sinensis HOM05D001797 ORTHO05D001650 5.5e-07 59.7 88 36.4
Medtr4g133900 Medicago truncatula HOM05D001797 ORTHO05D001650 5.5e-07 59.7 83 41.0
Os04g0400000 Oryza sativa ssp. japonica HOM05D013577 ORTHO05D001650 5.5e-07 59.7 86 39.5
Rhsim13G0141800 Rhododendron simsii HOM05D001797 ORTHO05D001650 5.5e-07 59.7 73 42.5
Sed0007136 Sechium edule HOM05D001797 ORTHO05D001650 5.5e-07 59.7 91 37.4
Sopen04g007040 Solanum pennellii HOM05D001797 ORTHO05D001650 5.5e-07 59.7 86 38.4
PGSC0003DMG400008441 Solanum tuberosum HOM05D001797 ORTHO05D001650 5.5e-07 59.7 74 41.9
CSS0006117 Camellia sinensis var. sinensis HOM05D001797 ORTHO05D001650 7.2e-07 59.3 75 38.7
ClCG01G011010 Citrullus lanatus HOM05D001797 ORTHO05D001650 7.2e-07 59.3 87 37.9
Cc03_g07690 Coffea canephora HOM05D001797 ORTHO05D001650 7.2e-07 59.3 78 38.5
Duzib192G0521 Durio zibethinus HOM05D001797 ORTHO05D001650 7.2e-07 59.3 77 39.0
Oeu052841.1 Olea europaea HOM05D001797 ORTHO05D001650 7.2e-07 59.3 79 40.5
RhsimUnG0175900 Rhododendron simsii HOM05D001797 ORTHO05D001650 7.2e-07 59.3 92 35.9
arahy.Tifrunner.gnm1.ann1.L21B75 Arachis hypogaea HOM05D001797 ORTHO05D001650 9.4e-07 58.9 92 37.0
Gorai.010G190200 Gossypium raimondii HOM05D001797 ORTHO05D001650 9.4e-07 58.9 70 40.0
Nn1g07498 Nelumbo nucifera HOM05D001797 ORTHO05D001650 9.4e-07 58.9 87 35.6
FvH4_3g00430 Fragaria vesca HOM05D001797 ORTHO05D001650 1.2e-06 58.5 74 39.2
FAN25G3651 Fragaria x ananassa HOM05D001797 ORTHO05D001650 1.2e-06 58.5 73 39.7
TWI38G0363 Tripterygium wilfordii HOM05D001797 ORTHO05D001650 1.2e-06 58.5 74 40.5
vmacro03617 Vaccinium macrocarpon HOM05D001797 ORTHO05D001650 1.2e-06 58.5 76 39.5
vmacro03619 Vaccinium macrocarpon HOM05D001797 ORTHO05D001650 1.2e-06 58.5 78 37.2
arahy.Tifrunner.gnm1.ann1.CMF379 Arachis hypogaea HOM05D001797 ORTHO05D001650 1.6e-06 58.2 79 39.2
arahy.Tifrunner.gnm1.ann1.Q4MEBS Arachis hypogaea HOM05D001797 ORTHO05D001650 1.6e-06 58.2 79 39.2
CSS0024411 Camellia sinensis var. sinensis HOM05D001797 ORTHO05D001650 1.6e-06 58.2 72 41.7
Cfa000045 Carpinus fangiana HOM05D001797 ORTHO05D001650 1.6e-06 58.2 106 33.0
Solyc05g054210.3 Solanum lycopersicum HOM05D001797 ORTHO05D001650 1.6e-06 58.2 77 39.0
Atru.chr1.2286 Acer truncatum HOM05D001797 ORTHO05D001650 2.1e-06 57.8 86 41.9
Ca_20999_v3 Cicer arietinum L. HOM05D001797 ORTHO05D001650 2.1e-06 57.8 81 39.5
Dinv15346 Davidia involucrata HOM05D001797 ORTHO05D001650 2.1e-06 57.8 74 40.5
Dinv15353 Davidia involucrata HOM05D001797 ORTHO05D001650 2.1e-06 57.8 90 36.7
Lj4g0001433 Lotus japonicus HOM05D001797 ORTHO05D001650 2.1e-06 57.8 78 41.0
Psat4g002360 Pisum sativum HOM05D001797 ORTHO05D001650 2.1e-06 57.8 77 39.0
Potri.006G019200 Populus trichocarpa HOM05D001797 ORTHO05D001650 2.1e-06 57.8 75 40.0
Potri.006G019500 Populus trichocarpa HOM05D001797 ORTHO05D001650 2.1e-06 57.8 79 36.7
PGR004G0947 Punica granatum HOM05D001797 ORTHO05D001650 2.1e-06 57.8 91 35.2
SGA_v2.0_scaffold49G18226 Striga asiatica HOM05D001797 ORTHO05D001650 2.1e-06 57.8 83 38.6
Aa31LG2G12440 Aethionema arabicum HOM05D001797 ORTHO05D001650 2.7e-06 57.4 76 36.8
BolC1t02597H Brassica oleracea HOM05D001797 ORTHO05D001650 2.7e-06 57.4 76 40.8
CANSAT56G0532 Cannabis sativa HOM05D001797 ORTHO05D001650 2.7e-06 57.4 75 41.3
Cc09_g08340 Coffea canephora HOM05D001797 ORTHO05D001650 2.7e-06 57.4 77 40.3
MELO3C026077.2 Cucumis melo HOM05D001797 ORTHO05D001650 2.7e-06 57.4 87 36.8
CsaV3_1G015440 Cucumis sativus L. HOM05D001797 ORTHO05D001650 2.7e-06 57.4 87 36.8
Dinv15352 Davidia involucrata HOM05D001797 ORTHO05D001650 2.7e-06 57.4 74 41.9
Duzib192G0859 Durio zibethinus HOM05D001797 ORTHO05D001650 2.7e-06 57.4 73 41.1
MD10G1337700 Malus domestica HOM05D001797 ORTHO05D001650 2.7e-06 57.4 75 42.7
PGSC0003DMG400015010 Solanum tuberosum HOM05D001797 ORTHO05D001650 2.7e-06 57.4 74 40.5
TPR.G5982 Trifolium pratense HOM05D001797 ORTHO05D001650 2.7e-06 57.4 83 38.6
CAN.G449.28 Capsicum annuum HOM05D001797 ORTHO05D001650 3.6e-06 57.0 70 41.4
Gohir.A06G156500 Gossypium hirsutum HOM05D001797 ORTHO05D001650 3.6e-06 57.0 86 36.0
Potri.006G018901 Populus trichocarpa HOM05D001797 ORTHO05D001650 3.6e-06 57.0 80 40.0
Zm00001eb084690 Zea mays HOM05D013577 ORTHO05D030350 3.6e-06 57.0 73 38.4
Eucgr.D01461 Eucalyptus grandis HOM05D001797 ORTHO05D001650 4.7e-06 56.6 87 36.8
Eucgr.E03869 Eucalyptus grandis HOM05D001797 ORTHO05D001650 4.7e-06 56.6 71 42.3
Lsat_1_v5_gn_7_13200 Lactuca sativa HOM05D001797 ORTHO05D001650 4.7e-06 56.6 93 32.3
Potri.006G018500 Populus trichocarpa HOM05D001797 ORTHO05D001650 4.7e-06 56.6 68 38.2
Potri.006G019600 Populus trichocarpa HOM05D001797 ORTHO05D001650 4.7e-06 56.6 79 35.4
PGR042G2878 Punica granatum HOM05D001797 ORTHO05D001650 4.7e-06 56.6 87 35.6
Solyc04g015020.3 Solanum lycopersicum HOM05D001797 ORTHO05D001650 4.7e-06 56.6 72 40.3
Sopen05g032700 Solanum pennellii HOM05D001797 ORTHO05D001650 4.7e-06 56.6 77 37.7
TPR.G14526 Trifolium pratense HOM05D001797 ORTHO05D001650 4.7e-06 56.6 78 39.7
TAR624G0438 Trochodendron aralioides HOM05D001797 ORTHO05D001650 4.7e-06 56.6 109 31.2
EL10Ac8g20254 Beta vulgaris HOM05D001797 ORTHO05D001650 6.1e-06 56.2 75 37.3
A01p21220 Brassica napus HOM05D001797 ORTHO05D001650 6.1e-06 56.2 76 39.5
C01p26520 Brassica napus HOM05D001797 ORTHO05D001650 6.1e-06 56.2 83 37.3
BolC1t02596H Brassica oleracea HOM05D001797 ORTHO05D001650 6.1e-06 56.2 76 39.5
Eucgr.D01467 Eucalyptus grandis HOM05D001797 ORTHO05D001650 6.1e-06 56.2 72 38.9
Manes.09G077766 Manihot esculenta HOM05D001797 ORTHO05D001650 6.1e-06 56.2 75 40.0
Manes.09G077799 Manihot esculenta HOM05D001797 ORTHO05D001650 6.1e-06 56.2 75 40.0
SGA_v2.0_scaffold630G53285 Striga asiatica HOM05D001797 ORTHO05D001650 6.1e-06 56.2 74 37.8
SGA_v2.0_scaffold89G27532 Striga asiatica HOM05D001797 ORTHO05D001650 6.1e-06 56.2 88 38.6
GSVIVG01005128001 Vitis vinifera HOM05D001797 ORTHO05D001650 6.1e-06 56.2 77 33.8
GSVIVG01005131001 Vitis vinifera HOM05D001797 ORTHO05D001650 6.1e-06 56.2 77 33.8
BcaC09g50336 Brassica carinata HOM05D001797 ORTHO05D001650 8.0e-06 55.8 76 39.5
C01p26550 Brassica napus HOM05D001797 ORTHO05D001650 8.0e-06 55.8 76 38.2
C01p26560 Brassica napus HOM05D001797 ORTHO05D001650 8.0e-06 55.8 76 39.5
Eucgr.E03868 Eucalyptus grandis HOM05D001797 ORTHO05D001650 8.0e-06 55.8 71 40.8
QL05p068018 Quercus lobata HOM05D001797 ORTHO05D001650 8.0e-06 55.8 69 43.5
QL05p068118 Quercus lobata HOM05D001797 ORTHO05D001650 8.0e-06 55.8 73 38.4


User provided reference genes

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