Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0621825 Oryza sativa ssp. japonica HOM05D060420 ORTHO05D000158 8.9e-50 199.9 97 100.0
Os03g0305400 Oryza sativa ssp. japonica HOM05D000483 ORTHO05D000158 3.1e-10 68.6 34 88.2
TPR.G19781 Trifolium pratense HOM05D000483 ORTHO05D000158 7.6e-09 63.9 32 84.4
Medtr1g087200 Medicago truncatula HOM05D000483 ORTHO05D000158 3.8e-08 61.6 32 81.2
Cfa005811 Carpinus fangiana HOM05D000483 ORTHO05D000158 5.0e-08 61.2 34 73.5
CDE02G2208 Ceratophyllum demersum HOM05D000483 ORTHO05D000158 5.0e-08 61.2 32 78.1
CiPaw.07G116600 Carya illinoinensis HOM05D000483 ORTHO05D000158 6.5e-08 60.8 34 73.5
THA.LOC104802198 Tarenaya hassleriana HOM05D000483 ORTHO05D000158 6.5e-08 60.8 34 73.5
Os03g0759250 Oryza sativa ssp. japonica HOM05D060420 ORTHO05D298007 8.5e-08 60.5 33 84.8
Lalb_Chr02g0147861 Lupinus albus HOM05D000483 ORTHO05D000158 1.4e-07 59.7 42 61.9
Duzib138G0262 Durio zibethinus HOM05D000483 ORTHO05D000158 1.9e-07 59.3 34 70.6
FvH4_5g39370 Fragaria vesca HOM05D000483 ORTHO05D000158 1.9e-07 59.3 34 70.6
FAN08G1105 Fragaria x ananassa HOM05D000483 ORTHO05D000158 1.9e-07 59.3 34 70.6
FAN13G0407 Fragaria x ananassa HOM05D000483 ORTHO05D000158 1.9e-07 59.3 34 70.6
FAN18G0621 Fragaria x ananassa HOM05D000483 ORTHO05D000158 1.9e-07 59.3 34 70.6
QL12p020118 Quercus lobata HOM05D000483 ORTHO05D000158 1.9e-07 59.3 34 70.6
RcHm_v2.0_Chr7g0241661 Rosa chinensis HOM05D000483 ORTHO05D000158 1.9e-07 59.3 34 70.6
TWI18G1285 Tripterygium wilfordii HOM05D000483 ORTHO05D000158 1.9e-07 59.3 34 70.6
Cpa.g.sc18.32 Carica papaya HOM05D000483 ORTHO05D000158 2.5e-07 58.9 32 75.0
Ca_10289_v3 Cicer arietinum L. HOM05D000483 ORTHO05D000158 2.5e-07 58.9 32 78.1
Ca_30055_v3 Cicer arietinum L. HOM05D000483 ORTHO05D000158 2.5e-07 58.9 32 78.1
Haze_05030 Corylus avellana HOM05D001136 ORTHO05D000158 2.5e-07 58.9 30 80.0
Nn3g21670 Nelumbo nucifera HOM05D000483 ORTHO05D000158 2.5e-07 58.9 32 75.0
Cfa006692 Carpinus fangiana HOM05D000483 ORTHO05D000158 3.2e-07 58.5 32 78.1
Nn3g21673 Nelumbo nucifera HOM05D000483 ORTHO05D000158 3.2e-07 58.5 32 78.1
Psat6g162080 Pisum sativum HOM05D000483 ORTHO05D000158 3.2e-07 58.5 32 75.0
CANSAT25G2824 Cannabis sativa HOM05D000483 ORTHO05D000158 4.2e-07 58.2 34 67.6
Oeu013217.1 Olea europaea HOM05D000483 ORTHO05D000158 4.2e-07 58.2 42 61.9
Phvul.007G214800 Phaseolus vulgaris HOM05D000483 ORTHO05D000158 4.2e-07 58.2 34 67.6
SEGI_15869 Sequoiadendron giganteum HOM05D000483 ORTHO05D000158 4.2e-07 58.2 34 61.8
Medtr1g083950 Medicago truncatula HOM05D000483 ORTHO05D000158 5.5e-07 57.8 42 59.5
TPR.G2626 Trifolium pratense HOM05D000483 ORTHO05D000158 5.5e-07 57.8 42 59.5
arahy.Tifrunner.gnm1.ann1.DG1RWB Arachis hypogaea HOM05D000483 ORTHO05D000158 7.2e-07 57.4 32 71.9
arahy.Tifrunner.gnm1.ann1.YXHF5Z Arachis hypogaea HOM05D000483 ORTHO05D000158 7.2e-07 57.4 32 71.9
COL.COLO4_23242 Corchorus olitorius HOM05D000483 ORTHO05D000158 7.2e-07 57.4 34 67.6
Glyma.10G013700 Glycine max HOM05D000483 ORTHO05D000158 7.2e-07 57.4 32 71.9
MD11G1315600 Malus domestica HOM05D000483 ORTHO05D000158 7.2e-07 57.4 32 71.9
Nitab4.5_0000570g0210 Nicotiana tabacum HOM05D000483 ORTHO05D000158 7.2e-07 57.4 34 70.6
Nitab4.5_0003466g0100 Nicotiana tabacum HOM05D000483 ORTHO05D000158 7.2e-07 57.4 34 70.6
SEGI_27044 Sequoiadendron giganteum HOM05D000483 ORTHO05D000158 7.2e-07 57.4 34 70.6
SEGI_36142 Sequoiadendron giganteum HOM05D000483 ORTHO05D000158 7.2e-07 57.4 34 70.6
Solyc12g099520.3 Solanum lycopersicum HOM05D000483 ORTHO05D000158 7.2e-07 57.4 34 70.6
Sopen12g034200 Solanum pennellii HOM05D000483 ORTHO05D000158 7.2e-07 57.4 34 70.6
PGSC0003DMG402004707 Solanum tuberosum HOM05D000483 ORTHO05D000158 7.2e-07 57.4 34 70.6
TWI75G1194 Tripterygium wilfordii HOM05D000483 ORTHO05D000158 7.2e-07 57.4 34 67.6
CDE08G0306 Ceratophyllum demersum HOM05D000483 ORTHO05D000158 9.3e-07 57.0 32 75.0
Lj5g0012282 Lotus japonicus HOM05D000483 ORTHO05D000158 9.3e-07 57.0 34 67.6
QL03p018569 Quercus lobata HOM05D000483 ORTHO05D000158 9.3e-07 57.0 32 75.0
RcHm_v2.0_Chr3g0456911 Rosa chinensis HOM05D000483 ORTHO05D000158 9.3e-07 57.0 32 75.0
SEGI_20953 Sequoiadendron giganteum HOM05D000483 ORTHO05D000158 9.3e-07 57.0 32 75.0
SEGI_32600 Sequoiadendron giganteum HOM05D000483 ORTHO05D000158 9.3e-07 57.0 32 75.0
vmacro19730 Vaccinium macrocarpon HOM05D000483 ORTHO05D000158 9.3e-07 57.0 32 75.0
VMungo0720G0054 Vigna mungo HOM05D000483 ORTHO05D000158 9.3e-07 57.0 32 75.0
CDE02G2730 Ceratophyllum demersum HOM05D000483 ORTHO05D000158 1.2e-06 56.6 32 71.9
CDE08G1150 Ceratophyllum demersum HOM05D000483 ORTHO05D000158 1.2e-06 56.6 32 71.9
Gohir.A08G119300 Gossypium hirsutum HOM05D000483 ORTHO05D000158 1.2e-06 56.6 34 64.7
Gorai.004G144200 Gossypium raimondii HOM05D000483 ORTHO05D000158 1.2e-06 56.6 34 64.7
Manes.09G176200 Manihot esculenta HOM05D000483 ORTHO05D000158 1.2e-06 56.6 32 71.9
Oeu013213.1 Olea europaea HOM05D000483 ORTHO05D000158 1.2e-06 56.6 32 71.9
QL03p018559 Quercus lobata HOM05D000483 ORTHO05D000158 1.2e-06 56.6 32 75.0
Sabra05G0025300 Salix brachista HOM05D000483 ORTHO05D000158 1.2e-06 56.6 32 71.9
CsaV3_4G001170 Cucumis sativus L. HOM05D000483 ORTHO05D000158 1.6e-06 56.2 34 67.6
Oeu062259.1 Olea europaea HOM05D000483 ORTHO05D000158 1.6e-06 56.2 32 68.8
PGR083G0208 Punica granatum HOM05D000483 ORTHO05D000158 1.6e-06 56.2 32 71.9
Sabra05G0012500 Salix brachista HOM05D000483 ORTHO05D000158 1.6e-06 56.2 32 71.9
MELO3C016005.2 Cucumis melo HOM05D000483 ORTHO05D000158 2.1e-06 55.8 40 60.0
CsaV3_7G029240 Cucumis sativus L. HOM05D000483 ORTHO05D000158 2.1e-06 55.8 40 60.0
Dinv44373 Davidia involucrata HOM05D000483 ORTHO05D000158 2.1e-06 55.8 32 71.9
FAN02G2130 Fragaria x ananassa HOM05D000483 ORTHO05D000158 2.1e-06 55.8 32 71.9
Lsat_1_v5_gn_5_103981 Lactuca sativa HOM05D000483 ORTHO05D000158 2.1e-06 55.8 32 71.9
MBI19_g46782_MAGBIO Magnolia biondii HOM05D000483 ORTHO05D000158 2.1e-06 55.8 32 71.9
Manes.05G002800 Manihot esculenta HOM05D000483 ORTHO05D000158 2.1e-06 55.8 34 64.7
Sed0004124 Sechium edule HOM05D000483 ORTHO05D000158 2.1e-06 55.8 32 71.9
Atru.chr5.1017 Acer truncatum HOM05D000483 ORTHO05D000158 2.7e-06 55.5 34 64.7
Atru.chr5.1027 Acer truncatum HOM05D000483 ORTHO05D000158 2.7e-06 55.5 34 64.7
ATR0693G041 Amborella trichopoda HOM05D000483 ORTHO05D000158 2.7e-06 55.5 32 71.9
arahy.Tifrunner.gnm1.ann1.35VVQ3 Arachis hypogaea HOM05D000483 ORTHO05D000158 2.7e-06 55.5 34 64.7
arahy.Tifrunner.gnm1.ann1.D9H2LP Arachis hypogaea HOM05D000483 ORTHO05D000158 2.7e-06 55.5 34 64.7
Ciclev10002689m.g Citrus clementina HOM05D000483 ORTHO05D000158 2.7e-06 55.5 32 71.9
Haze_04067 Corylus avellana HOM05D000483 ORTHO05D000158 2.7e-06 55.5 32 75.0
Dinv24428 Davidia involucrata HOM05D000483 ORTHO05D000158 2.7e-06 55.5 32 71.9
Glyma.10G147700 Glycine max HOM05D000483 ORTHO05D000158 2.7e-06 55.5 32 71.9
Glyma.20G098451 Glycine max HOM05D000483 ORTHO05D000158 2.7e-06 55.5 32 71.9
Gohir.A11G271600 Gossypium hirsutum HOM05D000483 ORTHO05D000158 2.7e-06 55.5 32 71.9
Gohir.A11G271700 Gossypium hirsutum HOM05D000483 ORTHO05D000158 2.7e-06 55.5 32 71.9
Gohir.D11G281800 Gossypium hirsutum HOM05D000483 ORTHO05D000158 2.7e-06 55.5 32 71.9
Gohir.D11G281900 Gossypium hirsutum HOM05D000483 ORTHO05D000158 2.7e-06 55.5 32 71.9
Gorai.007G304400 Gossypium raimondii HOM05D000483 ORTHO05D000158 2.7e-06 55.5 32 71.9
Gorai.007G304500 Gossypium raimondii HOM05D000483 ORTHO05D000158 2.7e-06 55.5 32 71.9
Peaxi162Scf01533g00023 Petunia axillaris HOM05D000483 ORTHO05D000158 2.7e-06 55.5 32 71.9
Potri.013G009800 Populus trichocarpa HOM05D000483 ORTHO05D000158 2.7e-06 55.5 32 71.9
Prupe.6G314600 Prunus persica HOM05D000483 ORTHO05D000158 2.7e-06 55.5 32 71.9
PGR044G0245 Punica granatum HOM05D000483 ORTHO05D000158 2.7e-06 55.5 32 71.9
PGR044G1207 Punica granatum HOM05D000483 ORTHO05D000158 2.7e-06 55.5 32 71.9
SEGI_02033 Sequoiadendron giganteum HOM05D000483 ORTHO05D000158 2.7e-06 55.5 38 60.5
Thecc.05G321600 Theobroma cacao HOM05D000483 ORTHO05D000158 2.7e-06 55.5 32 71.9
TWI56G0728 Tripterygium wilfordii HOM05D000483 ORTHO05D000158 2.7e-06 55.5 32 71.9
GSVIVG01031226001 Vitis vinifera HOM05D000483 ORTHO05D000158 2.7e-06 55.5 32 71.9
GSVIVG01031228001 Vitis vinifera HOM05D000483 ORTHO05D000158 2.7e-06 55.5 32 71.9
Cfa006693 Carpinus fangiana HOM05D000483 ORTHO05D000158 3.6e-06 55.1 32 71.9
Glyma.02G013100 Glycine max HOM05D000483 ORTHO05D000158 3.6e-06 55.1 32 68.8
Glyma.03G231700 Glycine max HOM05D000483 ORTHO05D000158 3.6e-06 55.1 32 71.9
Lalb_Chr21g0309541 Lupinus albus HOM05D000483 ORTHO05D000158 3.6e-06 55.1 32 71.9
Oeu014945.1 Olea europaea HOM05D000483 ORTHO05D000158 3.6e-06 55.1 34 61.8
PSO135G0676 Papaver somniferum HOM05D000483 ORTHO05D000158 3.6e-06 55.1 40 60.0
PSO724G1216 Papaver somniferum HOM05D000483 ORTHO05D000158 3.6e-06 55.1 40 60.0
Potri.005G015200 Populus trichocarpa HOM05D000483 ORTHO05D000158 3.6e-06 55.1 32 71.9
SEGI_32583 Sequoiadendron giganteum HOM05D000483 ORTHO05D000158 3.6e-06 55.1 33 69.7
SEGI_39276 Sequoiadendron giganteum HOM05D000483 ORTHO05D000158 3.6e-06 55.1 33 66.7
unitig_37.g12620 Utricularia gibba HOM05D000483 ORTHO05D000158 3.6e-06 55.1 32 71.9
vmacro19728 Vaccinium macrocarpon HOM05D000483 ORTHO05D000158 3.6e-06 55.1 32 68.8
Actinidia21003 Actinidia chinensis HOM05D000483 ORTHO05D000158 4.6e-06 54.7 32 65.6
Actinidia25843 Actinidia chinensis HOM05D000483 ORTHO05D000158 4.6e-06 54.7 32 65.6
MSTRG.18108 Avicennia marina HOM05D000483 ORTHO05D000158 4.6e-06 54.7 32 65.6
CANSAT54G1262 Cannabis sativa HOM05D000483 ORTHO05D000158 4.6e-06 54.7 32 68.8
CBR_g3955 Chara braunii HOM05D000483 ORTHO05D000158 4.6e-06 54.7 32 68.8
Ca_10165_v3 Cicer arietinum L. HOM05D000483 ORTHO05D000158 4.6e-06 54.7 42 57.1
Glyma.19G228700 Glycine max HOM05D000483 ORTHO05D000158 4.6e-06 54.7 32 68.8
Nn4g25619 Nelumbo nucifera HOM05D000483 ORTHO05D000158 4.6e-06 54.7 32 68.8
Potri.002G193800 Populus trichocarpa HOM05D000483 ORTHO05D000158 4.6e-06 54.7 32 71.9
SalBow3G2125 Salvia bowleyana HOM05D000483 ORTHO05D000158 4.6e-06 54.7 32 65.6
Hund07139 Selenicereus undatus HOM05D000483 ORTHO05D000158 4.6e-06 54.7 32 68.8
SEGI_00436 Sequoiadendron giganteum HOM05D000483 ORTHO05D000158 4.6e-06 54.7 33 66.7
vmacro19734 Vaccinium macrocarpon HOM05D000483 ORTHO05D000158 4.6e-06 54.7 32 71.9
ATR0582G081 Amborella trichopoda HOM05D000483 ORTHO05D000158 6.1e-06 54.3 32 68.8
Cc02_g34900 Coffea canephora HOM05D000483 ORTHO05D000158 6.1e-06 54.3 32 71.9
FAN14G2599 Fragaria x ananassa HOM05D000483 ORTHO05D000158 6.1e-06 54.3 32 71.9
HanXRQChr10g0294501 Helianthus annuus HOM05D000483 ORTHO05D000158 6.1e-06 54.3 32 68.8
MD04G1194600 Malus domestica HOM05D000483 ORTHO05D000158 6.1e-06 54.3 32 68.8
Nn4g23881 Nelumbo nucifera HOM05D000483 ORTHO05D000158 6.1e-06 54.3 32 65.6
Nn4g25617 Nelumbo nucifera HOM05D000483 ORTHO05D000158 6.1e-06 54.3 32 68.8
Nitab4.5_0000368g0200 Nicotiana tabacum HOM05D000483 ORTHO05D000158 6.1e-06 54.3 32 68.8
Nitab4.5_0000960g0020 Nicotiana tabacum HOM05D000483 ORTHO05D000158 6.1e-06 54.3 32 71.9
Nitab4.5_0001904g0040 Nicotiana tabacum HOM05D000483 ORTHO05D000158 6.1e-06 54.3 32 71.9
Nitab4.5_0005076g0050 Nicotiana tabacum HOM05D000483 ORTHO05D000158 6.1e-06 54.3 32 71.9
Peaxi162Scf00498g00722 Petunia axillaris HOM05D000483 ORTHO05D000158 6.1e-06 54.3 32 71.9
Peaxi162Scf00673g00223 Petunia axillaris HOM05D000483 ORTHO05D000158 6.1e-06 54.3 32 68.8
Prupe.1G313000 Prunus persica HOM05D000483 ORTHO05D000158 6.1e-06 54.3 32 71.9
Prupe.8G271100 Prunus persica HOM05D000483 ORTHO05D000158 6.1e-06 54.3 34 61.8
QL03p018546 Quercus lobata HOM05D000483 ORTHO05D000158 6.1e-06 54.3 32 71.9
Sabra11G0019700 Salix brachista HOM05D000483 ORTHO05D000158 6.1e-06 54.3 32 68.8
Sabra13G0008300 Salix brachista HOM05D000483 ORTHO05D000158 6.1e-06 54.3 32 68.8
Solyc01g066810.4 Solanum lycopersicum HOM05D000483 ORTHO05D000158 6.1e-06 54.3 32 71.9
Solyc01g100370.3 Solanum lycopersicum HOM05D000483 ORTHO05D000158 6.1e-06 54.3 32 68.8
Solyc05g054270.2 Solanum lycopersicum HOM05D000483 ORTHO05D000158 6.1e-06 54.3 32 71.9
Sopen01g028410 Solanum pennellii HOM05D000002 ORTHO05D000001 6.1e-06 54.3 32 71.9
Sopen01g043890 Solanum pennellii HOM05D000483 ORTHO05D000158 6.1e-06 54.3 32 68.8
Sopen05g032760 Solanum pennellii HOM05D000483 ORTHO05D000158 6.1e-06 54.3 32 71.9
PGSC0003DMG400002804 Solanum tuberosum HOM05D000483 ORTHO05D000158 6.1e-06 54.3 32 68.8
PGSC0003DMG400008451 Solanum tuberosum HOM05D000483 ORTHO05D000158 6.1e-06 54.3 32 71.9
PGSC0003DMG400011342 Solanum tuberosum HOM05D000483 ORTHO05D000158 6.1e-06 54.3 32 71.9
vmacro15115 Vaccinium macrocarpon HOM05D000483 ORTHO05D000158 6.1e-06 54.3 35 60.0
CSS0034149 Camellia sinensis var. sinensis HOM05D000483 ORTHO05D000158 7.9e-06 53.9 32 68.8
CAN.G1715.12 Capsicum annuum HOM05D000483 ORTHO05D000158 7.9e-06 53.9 32 68.8
Cfa005926 Carpinus fangiana HOM05D000483 ORTHO05D000158 7.9e-06 53.9 39 59.0
CiPaw.07G028600 Carya illinoinensis HOM05D000483 ORTHO05D000158 7.9e-06 53.9 32 71.9
CDE06G0626 Ceratophyllum demersum HOM05D000483 ORTHO05D000158 7.9e-06 53.9 32 71.9
Glyma.19G215800 Glycine max HOM05D000483 ORTHO05D000158 7.9e-06 53.9 32 62.5
Gohir.A11G272600 Gossypium hirsutum HOM05D000483 ORTHO05D000158 7.9e-06 53.9 32 68.8
Gohir.D11G282800 Gossypium hirsutum HOM05D000483 ORTHO05D000158 7.9e-06 53.9 32 68.8
Gorai.007G305600 Gossypium raimondii HOM05D000483 ORTHO05D000158 7.9e-06 53.9 32 68.8
Lj5A335T27 Lonicera japonica HOM05D000483 ORTHO05D000158 7.9e-06 53.9 32 68.8
Sabra06G0084200 Salix brachista HOM05D000483 ORTHO05D000158 7.9e-06 53.9 32 65.6
Sabra14G0111900 Salix brachista HOM05D000483 ORTHO05D000158 7.9e-06 53.9 32 65.6
Sabra18G0030400 Salix brachista HOM05D000483 ORTHO05D000158 7.9e-06 53.9 32 65.6
SEGI_17212 Sequoiadendron giganteum HOM05D000483 ORTHO05D000158 7.9e-06 53.9 32 71.9
SGA_v2.0_scaffold334G49062 Striga asiatica HOM05D000483 ORTHO05D000158 7.9e-06 53.9 32 62.5
TPR.G4138 Trifolium pratense HOM05D000483 ORTHO05D000158 7.9e-06 53.9 34 64.7
TAR636G0527 Trochodendron aralioides HOM05D000483 ORTHO05D000158 7.9e-06 53.9 69 43.5
GSVIVG01028109001 Vitis vinifera HOM05D000483 ORTHO05D000158 7.9e-06 53.9 32 65.6


User provided reference genes

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