Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0621400 Oryza sativa ssp. japonica HOM05D000049 ORTHO05D008785 6.9e-53 210.7 132 100.0
Gohir.D02G207500 Gossypium hirsutum HOM05D000049 ORTHO05D008785 3.0e-16 89.0 101 46.5
Gorai.005G235400 Gossypium raimondii HOM05D000049 ORTHO05D008785 3.9e-16 88.6 101 46.5
Thecc.02G106900 Theobroma cacao HOM05D000049 ORTHO05D008785 3.9e-16 88.6 102 47.1
Duzib248G1051 Durio zibethinus HOM05D000049 ORTHO05D008785 6.7e-16 87.8 102 47.1
Aqoxy5G01153 Aquilegia oxysepala HOM05D000049 ORTHO05D008785 1.5e-15 86.7 98 50.0
Duzib132G0396 Durio zibethinus HOM05D000049 ORTHO05D008785 1.5e-15 86.7 100 47.0
Gohir.A03G186700 Gossypium hirsutum HOM05D000049 ORTHO05D008785 1.5e-15 86.7 101 47.5
Hma1.2p1_0796F.1_g219130 Hydrangea macrophylla HOM05D000049 ORTHO05D008785 1.5e-15 86.7 102 49.0
Oeu018599.1 Olea europaea HOM05D000049 ORTHO05D008785 4.4e-15 85.1 86 51.2
Cpa.g.sc106.84 Carica papaya HOM05D000049 ORTHO05D008785 7.4e-15 84.3 102 45.1
HanXRQChr03g0070281 Helianthus annuus HOM05D000049 ORTHO05D008785 7.4e-15 84.3 99 46.5
GSVIVG01003167001 Vitis vinifera HOM05D000049 ORTHO05D008785 7.4e-15 84.3 86 51.2
Atru.chr5.2581 Acer truncatum HOM05D000049 ORTHO05D008785 9.7e-15 84.0 98 49.0
Ciclev10029534m.g Citrus clementina HOM05D000049 ORTHO05D008785 9.7e-15 84.0 86 53.5
SalBow3G3686 Salvia bowleyana HOM05D000049 ORTHO05D008785 9.7e-15 84.0 100 48.0
EL10Ac9g22295 Beta vulgaris HOM05D000049 ORTHO05D008785 1.3e-14 83.6 102 46.1
Nn1g04714 Nelumbo nucifera HOM05D000049 ORTHO05D008785 1.3e-14 83.6 97 48.5
PGSC0003DMG400025866 Solanum tuberosum HOM05D000049 ORTHO05D008785 1.3e-14 83.6 102 48.0
Manes.02G137400 Manihot esculenta HOM05D000049 ORTHO05D008785 1.7e-14 83.2 98 48.0
Oeu010393.1 Olea europaea HOM05D000049 ORTHO05D008785 1.7e-14 83.2 86 50.0
CANSAT25G0973 Cannabis sativa HOM05D000049 ORTHO05D008785 2.2e-14 82.8 102 45.1
Sc08g0001450 Simmondsia chinensis HOM05D000049 ORTHO05D008785 2.2e-14 82.8 101 45.5
Solyc01g107660.3 Solanum lycopersicum HOM05D000049 ORTHO05D008785 2.2e-14 82.8 102 49.0
VMungo0720G1000 Vigna mungo HOM05D000049 ORTHO05D008785 2.2e-14 82.8 86 50.0
CiPaw.06G170000 Carya illinoinensis HOM05D000049 ORTHO05D008785 2.8e-14 82.4 102 44.1
Glyma.20G129600 Glycine max HOM05D000049 ORTHO05D008785 2.8e-14 82.4 86 51.2
Cc02_g19180 Coffea canephora HOM05D000049 ORTHO05D008785 3.7e-14 82.0 86 50.0
Prupe.8G134100 Prunus persica HOM05D000049 ORTHO05D008785 3.7e-14 82.0 83 54.2
HPP92_004768 Vanilla planifolia HOM05D000049 ORTHO05D008785 4.8e-14 81.6 86 53.5
CAN.G1231.12 Capsicum annuum HOM05D000049 ORTHO05D008785 6.3e-14 81.3 88 47.7
AUR62039109 Chenopodium quinoa HOM05D000049 ORTHO05D008785 6.3e-14 81.3 102 42.2
Glyma.20G127500 Glycine max HOM05D000049 ORTHO05D008785 6.3e-14 81.3 86 48.8
SGA_v2.0_scaffold393G50708 Striga asiatica HOM05D000049 ORTHO05D008785 6.3e-14 81.3 97 44.3
TWI31G0015 Tripterygium wilfordii HOM05D000049 ORTHO05D008785 6.3e-14 81.3 101 44.6
Actinidia27967 Actinidia chinensis HOM05D000049 ORTHO05D008785 8.2e-14 80.9 90 46.7
Lj5g0006015 Lotus japonicus HOM05D000049 ORTHO05D008785 8.2e-14 80.9 101 47.5
Psat6g219680 Pisum sativum HOM05D000049 ORTHO05D008785 8.2e-14 80.9 86 50.0
Ah.01g018130 Amaranthus hybridus HOM05D000049 ORTHO05D008785 1.1e-13 80.5 89 47.2
AUR62010281 Chenopodium quinoa HOM05D000049 ORTHO05D008785 1.1e-13 80.5 86 46.5
Lalb_Chr02g0145351 Lupinus albus HOM05D000049 ORTHO05D008785 1.1e-13 80.5 97 47.4
Potri.001G301100 Populus trichocarpa HOM05D000049 ORTHO05D008785 1.1e-13 80.5 86 50.0
THA.LOC104819560 Tarenaya hassleriana HOM05D000049 ORTHO05D008785 1.1e-13 80.5 101 44.6
Atru.chr11.1081 Acer truncatum HOM05D000049 ORTHO05D008785 1.4e-13 80.1 97 47.4
AL7G17120 Arabidopsis lyrata HOM05D000049 ORTHO05D008785 1.4e-13 80.1 97 49.5
AT4G34190 Arabidopsis thaliana HOM05D000049 ORTHO05D008785 1.4e-13 80.1 86 50.0
arahy.Tifrunner.gnm1.ann1.MU25MQ Arachis hypogaea HOM05D000049 ORTHO05D008785 1.4e-13 80.1 98 44.9
CSS0023695 Camellia sinensis var. sinensis HOM05D000049 ORTHO05D008785 1.4e-13 80.1 101 42.6
FvH4_2g05321 Fragaria vesca HOM05D000049 ORTHO05D008785 1.4e-13 80.1 84 51.2
MD05G1088100 Malus domestica HOM05D000049 ORTHO05D008785 1.4e-13 80.1 83 51.8
Phvul.007G038900 Phaseolus vulgaris HOM05D000049 ORTHO05D008785 1.4e-13 80.1 86 47.7
Cfa004569 Carpinus fangiana HOM05D000049 ORTHO05D008785 1.8e-13 79.7 102 44.1
CiPaw.05G010600 Carya illinoinensis HOM05D000049 ORTHO05D008785 1.8e-13 79.7 86 47.7
ECA240G2980 Erigeron canadensis HOM05D000049 ORTHO05D000027 1.8e-13 79.7 88 47.7
FAN20G0640 Fragaria x ananassa HOM05D000049 ORTHO05D008785 1.8e-13 79.7 84 51.2
Glyma.10G263000 Glycine max HOM05D000049 ORTHO05D008785 1.8e-13 79.7 86 47.7
Nitab4.5_0002815g0100 Nicotiana tabacum HOM05D000049 ORTHO05D008785 1.8e-13 79.7 86 51.2
Sabra16G0189300 Salix brachista HOM05D000049 ORTHO05D008785 1.8e-13 79.7 86 48.8
TPR.G13867 Trifolium pratense HOM05D000049 ORTHO05D008785 2.4e-13 79.3 86 47.7
unitig_22.g6845 Utricularia gibba HOM05D000049 ORTHO05D008785 2.4e-13 79.3 90 46.7
BcaNung03801 Brassica carinata HOM05D000049 ORTHO05D008785 3.1e-13 79.0 89 48.3
C01p04640 Brassica napus HOM05D000049 ORTHO05D008785 3.1e-13 79.0 89 48.3
BolC1t00447H Brassica oleracea HOM05D000049 ORTHO05D008785 3.1e-13 79.0 89 48.3
PGR042G1228 Punica granatum HOM05D000049 ORTHO05D008785 3.1e-13 79.0 97 46.4
A01p04250 Brassica napus HOM05D000049 ORTHO05D008785 4.1e-13 78.6 89 48.3
BraA01t00414Z Brassica rapa HOM05D000049 ORTHO05D008785 4.1e-13 78.6 89 48.3
Haze_10161 Corylus avellana HOM05D000049 ORTHO05D008785 4.1e-13 78.6 102 44.1
Eucgr.H03224 Eucalyptus grandis HOM05D000049 ORTHO05D008785 4.1e-13 78.6 86 46.5
Potri.009G096800 Populus trichocarpa HOM05D000049 ORTHO05D008785 4.1e-13 78.6 101 42.6
RcHm_v2.0_Chr6g0255531 Rosa chinensis HOM05D000049 ORTHO05D008785 4.1e-13 78.6 84 51.2
Carub.0007s0619 Capsella rubella HOM05D000049 ORTHO05D008785 5.3e-13 78.2 101 44.6
QL11p033983 Quercus lobata HOM05D000049 ORTHO05D008785 5.3e-13 78.2 101 42.6
Zm00001eb048670 Zea mays HOM05D000049 ORTHO05D008785 5.3e-13 78.2 100 47.0
Aa31LG2G16660 Aethionema arabicum HOM05D000049 ORTHO05D008785 7.0e-13 77.8 101 43.6
Thhalv10026482m.g Eutrema salsugineum HOM05D000049 ORTHO05D008785 7.0e-13 77.8 101 42.6
Hund06332 Selenicereus undatus HOM05D000049 ORTHO05D008785 7.0e-13 77.8 86 47.7
THA.LOC104807247 Tarenaya hassleriana HOM05D000049 ORTHO05D008785 9.1e-13 77.4 101 44.6
CANSAT25G0620 Cannabis sativa HOM05D000049 ORTHO05D008785 1.2e-12 77.0 100 42.0
CDE02G2484 Ceratophyllum demersum HOM05D000049 ORTHO05D008785 1.2e-12 77.0 101 45.5
MSTRG.5347 Avicennia marina HOM05D000049 ORTHO05D008785 1.6e-12 76.6 98 44.9
CARHR242610 Cardamine hirsuta HOM05D000049 ORTHO05D008785 2.0e-12 76.3 84 47.6
Nitab4.5_0005392g0020 Nicotiana tabacum HOM05D000049 ORTHO05D008785 2.6e-12 75.9 86 48.8
Sp7g31960 Schrenkiella parvula HOM05D000049 ORTHO05D008785 2.6e-12 75.9 84 48.8
DCAR_030806 Daucus carota HOM05D000049 ORTHO05D008785 3.5e-12 75.5 94 43.6
Sed0018040 Sechium edule HOM05D000049 ORTHO05D008785 3.5e-12 75.5 84 47.6
Migut.B00381 Erythranthe guttata HOM05D000049 ORTHO05D008785 5.9e-12 74.7 81 49.4
Dinv42184 Davidia involucrata HOM05D000049 ORTHO05D008785 7.7e-12 74.3 89 47.2
Migut.N01171 Erythranthe guttata HOM05D000049 ORTHO05D008785 7.7e-12 74.3 98 43.9
PSO210G6109 Papaver somniferum HOM05D000049 ORTHO05D008785 1.0e-11 73.9 102 44.1
ClCG02G006290 Citrullus lanatus HOM05D000049 ORTHO05D008785 1.7e-11 73.2 84 46.4
CsaV3_7G008250 Cucumis sativus L. HOM05D000049 ORTHO05D008785 1.7e-11 73.2 84 46.4
TAR381G1170 Trochodendron aralioides HOM05D000049 ORTHO05D008785 2.2e-11 72.8 95 42.1
arahy.Tifrunner.gnm1.ann1.KJA62A Arachis hypogaea HOM05D000049 ORTHO05D008785 3.8e-11 72.0 91 44.0
Peaxi162Scf00016g02238 Petunia axillaris HOM05D000049 ORTHO05D008785 3.8e-11 72.0 86 45.3
SEGI_21574 Sequoiadendron giganteum HOM05D000049 ORTHO05D008785 8.5e-11 70.9 81 43.2
CSS0021501 Camellia sinensis var. sinensis HOM05D000049 ORTHO05D008785 1.1e-10 70.5 87 43.7
CSS0024818 Camellia sinensis var. sinensis HOM05D000049 ORTHO05D008785 1.1e-10 70.5 87 43.7
Medtr1g107490 Medicago truncatula HOM05D000049 ORTHO05D008785 3.2e-10 68.9 86 44.2
PSO170G1282 Papaver somniferum HOM05D000049 ORTHO05D008785 2.7e-09 65.9 102 42.2
Hund00143 Selenicereus undatus HOM05D000049 ORTHO05D008785 3.6e-09 65.5 89 42.7
FAN15G1433 Fragaria x ananassa HOM05D000049 ORTHO05D008785 8.0e-09 64.3 75 48.0
FAN24G0707 Fragaria x ananassa HOM05D000049 ORTHO05D008785 8.0e-09 64.3 75 46.7
Mapoly0006s0145 Marchantia polymorpha HOM05D000049 ORTHO05D008785 2.3e-08 62.8 86 39.5
MELO3C018482.2 Cucumis melo HOM05D000049 ORTHO05D000027 4.0e-08 62.0 71 47.9
ATR0691G295 Amborella trichopoda HOM05D000049 ORTHO05D008785 2.6e-07 59.3 55 52.7
AagrBONN_evm.TU.Sc2ySwM_117.2783 Anthoceros agrestis HOM05D000049 ORTHO05D008785 2.6e-07 59.3 68 42.6
SMO340G0196 Selaginella moellendorffii HOM05D000049 ORTHO05D008785 3.7e-06 55.5 86 37.2
Pp3c1_21810 Physcomitrium patens HOM05D000049 ORTHO05D008785 4.8e-06 55.1 89 32.6


User provided reference genes

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