Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0616200 Oryza sativa ssp. japonica HOM05D007181 ORTHO05D008722 4.3e-102 374.8 207 100.0
Zm00001eb166760 Zea mays HOM05D007181 ORTHO05D008722 1.6e-51 206.8 177 70.1
Nn8g40635 Nelumbo nucifera HOM05D007181 ORTHO05D008722 3.2e-36 156.0 203 52.2
GSVIVG01003131001 Vitis vinifera HOM05D007181 ORTHO05D008722 3.5e-35 152.5 190 50.5
Nn8g40634 Nelumbo nucifera HOM05D007181 ORTHO05D008722 6.0e-35 151.8 195 51.8
Ciclev10022317m.g Citrus clementina HOM05D007181 ORTHO05D008722 4.3e-33 145.6 201 47.3
CDE06G2554 Ceratophyllum demersum HOM05D007181 ORTHO05D008722 1.4e-31 140.6 203 44.8
CSS0018066 Camellia sinensis var. sinensis HOM05D007181 ORTHO05D008722 1.8e-31 140.2 196 42.9
MBI13_g01691_MAGBIO Magnolia biondii HOM05D007181 ORTHO05D008722 4.0e-31 139.0 192 47.9
Aqoxy7G04176 Aquilegia oxysepala HOM05D007181 ORTHO05D008722 5.2e-31 138.7 185 43.2
CSS0010421 Camellia sinensis var. sinensis HOM05D007181 ORTHO05D008722 1.2e-30 137.5 144 50.0
Actinidia19968 Actinidia chinensis HOM05D007181 ORTHO05D008722 2.6e-30 136.3 200 41.0
Dinv32881 Davidia involucrata HOM05D007181 ORTHO05D008722 2.9e-29 132.9 201 48.8
Potri.002G047400 Populus trichocarpa HOM05D007181 ORTHO05D008722 4.9e-29 132.1 187 41.2
Prupe.8G234100 Prunus persica HOM05D007181 ORTHO05D008722 6.4e-29 131.7 191 43.5
HPP92_028259 Vanilla planifolia HOM05D007181 ORTHO05D008722 8.3e-29 131.3 144 47.9
VMungo1383G2224 Vigna mungo HOM05D007181 ORTHO05D008722 8.3e-29 131.3 187 46.5
arahy.Tifrunner.gnm1.ann1.M9RGYA Arachis hypogaea HOM05D007181 ORTHO05D008722 1.4e-28 130.6 137 48.9
vmacro02617 Vaccinium macrocarpon HOM05D007181 ORTHO05D008722 2.4e-28 129.8 198 40.4
Hma1.2p1_0760F.1_g214120 Hydrangea macrophylla HOM05D007181 ORTHO05D008722 3.2e-28 129.4 201 42.3
Lj1g0009574 Lotus japonicus HOM05D007181 ORTHO05D008722 4.1e-28 129.0 132 50.0
PSO210G2677 Papaver somniferum HOM05D007181 ORTHO05D008722 4.1e-28 129.0 133 51.9
PSO210G2070 Papaver somniferum HOM05D007181 ORTHO05D008722 5.4e-28 128.6 133 57.1
MD03G1257200 Malus domestica HOM05D007181 ORTHO05D008722 9.2e-28 127.9 184 46.7
Manes.05G082200 Manihot esculenta HOM05D007181 ORTHO05D008722 1.2e-27 127.5 191 50.3
Gorai.007G100900 Gossypium raimondii HOM05D007181 ORTHO05D008722 1.6e-27 127.1 184 45.7
Cc00_g18800 Coffea canephora HOM05D007181 ORTHO05D008722 2.1e-27 126.7 199 48.2
CiPaw.08G110300 Carya illinoinensis HOM05D007181 ORTHO05D008722 3.5e-27 125.9 191 47.6
Phvul.001G155300 Phaseolus vulgaris HOM05D007181 ORTHO05D008722 6.0e-27 125.2 198 45.5
Sabra02G0038300 Salix brachista HOM05D007181 ORTHO05D008722 6.0e-27 125.2 134 47.8
Duzib211G0516 Durio zibethinus HOM05D007181 ORTHO05D008722 7.8e-27 124.8 146 56.8
Gohir.D11G094500 Gossypium hirsutum HOM05D007181 ORTHO05D008722 7.8e-27 124.8 197 44.7
SGA_v2.0_scaffold1G00542 Striga asiatica HOM05D007181 ORTHO05D008722 1.3e-26 124.0 145 60.7
SMO143G0136 Selaginella moellendorffii HOM05D007181 ORTHO05D008722 1.7e-26 123.6 184 39.1
Peaxi162Scf00146g10111 Petunia axillaris HOM05D007181 ORTHO05D008722 3.9e-26 122.5 198 43.9
Oeu025775.1 Olea europaea HOM05D007181 ORTHO05D008722 5.1e-26 122.1 147 56.5
Haze_04637 Corylus avellana HOM05D000129 ORTHO05D000144 8.6e-26 121.3 186 46.2
Gohir.D08G205700 Gossypium hirsutum HOM05D007181 ORTHO05D008722 8.6e-26 121.3 146 50.0
Gorai.004G217700 Gossypium raimondii HOM05D007181 ORTHO05D008722 8.6e-26 121.3 146 47.9
Medtr7g095740 Medicago truncatula HOM05D007181 ORTHO05D008722 8.6e-26 121.3 188 48.4
Rhsim13G0029700 Rhododendron simsii HOM05D007181 ORTHO05D008722 1.5e-25 120.6 194 38.7
BcaC07g40807 Brassica carinata HOM05D007181 ORTHO05D008722 1.9e-25 120.2 152 46.1
C08p38020 Brassica napus HOM05D007181 ORTHO05D008722 1.9e-25 120.2 152 46.1
BolC8t51376H Brassica oleracea HOM05D007181 ORTHO05D008722 1.9e-25 120.2 152 46.1
Haze_04636 Corylus avellana HOM05D007181 ORTHO05D008722 1.9e-25 120.2 186 46.2
Lsat_1_v5_gn_5_185100 Lactuca sativa HOM05D007181 ORTHO05D008722 1.9e-25 120.2 198 39.4
TPR.G19095 Trifolium pratense HOM05D007181 ORTHO05D008722 1.9e-25 120.2 174 49.4
Gohir.A11G090066 Gossypium hirsutum HOM05D007181 ORTHO05D008722 2.5e-25 119.8 146 52.1
RcHm_v2.0_Chr6g0289821 Rosa chinensis HOM05D007181 ORTHO05D008722 2.5e-25 119.8 190 37.9
Nitab4.5_0003555g0080 Nicotiana tabacum HOM05D007181 ORTHO05D008722 3.3e-25 119.4 199 44.7
Thecc.01G270500 Theobroma cacao HOM05D007181 ORTHO05D008722 3.3e-25 119.4 146 48.6
A09p55080 Brassica napus HOM05D007181 ORTHO05D008722 4.3e-25 119.0 179 42.5
Glyma.19G160000 Glycine max HOM05D007181 ORTHO05D008722 7.3e-25 118.2 135 57.8
CANSAT25G0029 Cannabis sativa HOM05D007181 ORTHO05D008722 9.5e-25 117.9 187 39.0
QL12p042395 Quercus lobata HOM05D007181 ORTHO05D008722 1.2e-24 117.5 189 47.1
BraA09t40915Z Brassica rapa HOM05D007181 ORTHO05D008722 2.8e-24 116.3 136 47.1
COL.COLO4_09179 Corchorus olitorius HOM05D007181 ORTHO05D008722 2.8e-24 116.3 142 54.9
SEGI_03897 Sequoiadendron giganteum HOM05D007181 ORTHO05D008722 2.8e-24 116.3 209 45.0
PGSC0003DMG400004278 Solanum tuberosum HOM05D007181 ORTHO05D008722 4.7e-24 115.5 192 40.1
Atru.chr5.1530 Acer truncatum HOM05D007181 ORTHO05D008722 8.1e-24 114.8 184 45.7
Hma1.2p1_1332F.1_g276040 Hydrangea macrophylla HOM05D007181 ORTHO05D008722 8.1e-24 114.8 136 50.0
Gohir.A05G078500 Gossypium hirsutum HOM05D000144 ORTHO05D008722 1.1e-23 114.4 186 36.0
SalBow4G0298 Salvia bowleyana HOM05D007181 ORTHO05D008722 1.4e-23 114.0 204 45.6
SalBow4G3342 Salvia bowleyana HOM05D007181 ORTHO05D008722 1.4e-23 114.0 204 45.6
EL10Ac5g10486 Beta vulgaris HOM05D007181 ORTHO05D008722 2.3e-23 113.2 192 36.5
FvH4_2g22890 Fragaria vesca HOM05D007181 ORTHO05D008722 3.1e-23 112.8 145 49.0
Sp5g00160 Schrenkiella parvula HOM05D007181 ORTHO05D008722 4.0e-23 112.5 130 51.5
Solyc12g100320.2 Solanum lycopersicum HOM05D007181 ORTHO05D008722 6.8e-23 111.7 143 44.1
SalBow6G6987 Salvia bowleyana HOM05D007181 ORTHO05D008722 8.9e-23 111.3 197 46.2
AUR62032277 Chenopodium quinoa HOM05D007181 ORTHO05D008722 1.2e-22 110.9 133 47.4
THA.LOC104817569 Tarenaya hassleriana HOM05D007181 ORTHO05D008722 2.0e-22 110.2 187 46.0
ClCG07G000510 Citrullus lanatus HOM05D007181 ORTHO05D008722 2.6e-22 109.8 137 54.7
Sopen12g034950 Solanum pennellii HOM05D007181 ORTHO05D008722 2.6e-22 109.8 143 44.1
Thhalv10006272m.g Eutrema salsugineum HOM05D007181 ORTHO05D008722 3.4e-22 109.4 130 52.3
Aa31LG10G17220 Aethionema arabicum HOM05D007181 ORTHO05D008722 5.8e-22 108.6 106 49.1
BcaB03g13697 Brassica carinata HOM05D007181 ORTHO05D008722 7.5e-22 108.2 137 52.6
AT3G63390 Arabidopsis thaliana HOM05D007181 ORTHO05D008722 9.9e-22 107.8 140 55.7
MELO3C001156.2 Cucumis melo HOM05D007181 ORTHO05D008722 1.3e-21 107.5 132 56.8
Ca_20981_v3 Cicer arietinum L. HOM05D007181 ORTHO05D008722 1.7e-21 107.1 141 53.2
Gohir.A08G187400 Gossypium hirsutum HOM05D007181 ORTHO05D008722 1.7e-21 107.1 146 49.3
AUR62011964 Chenopodium quinoa HOM05D007181 ORTHO05D008722 2.2e-21 106.7 133 46.6
Sed0014767 Sechium edule HOM05D007181 ORTHO05D008722 3.7e-21 105.9 137 54.0
Sc05g0001150 Simmondsia chinensis HOM05D007181 ORTHO05D008722 3.7e-21 105.9 104 55.8
AL5G46250 Arabidopsis lyrata HOM05D007181 ORTHO05D008722 8.3e-21 104.8 132 51.5
CAN.G575.12 Capsicum annuum HOM05D007181 ORTHO05D008722 1.1e-20 104.4 195 41.0
CsaV3_2G013840 Cucumis sativus L. HOM05D007181 ORTHO05D008722 2.4e-20 103.2 132 55.3
HanXRQChr01g0005991 Helianthus annuus HOM05D007181 ORTHO05D008722 2.4e-20 103.2 197 36.5
CARHR291580 Cardamine hirsuta HOM05D007181 ORTHO05D008722 5.4e-20 102.1 98 51.0
Ah.11g050140 Amaranthus hybridus HOM05D007181 ORTHO05D008722 1.6e-19 100.5 133 42.1
Lj2P1163T10 Lonicera japonica HOM05D007181 ORTHO05D008722 1.6e-19 100.5 173 38.2
Cpa.g.sc52.129 Carica papaya HOM05D007181 ORTHO05D008722 2.7e-19 99.8 133 53.4
SHI10021 Sapria himalayana HOM05D007181 ORTHO05D008722 3.5e-19 99.4 131 54.2
Pp3c24_16150 Physcomitrium patens HOM05D007181 ORTHO05D008722 4.6e-19 99.0 118 45.8
PGR044G0699 Punica granatum HOM05D007181 ORTHO05D008722 4.6e-19 99.0 104 51.0
MD11G1277900 Malus domestica HOM05D007181 ORTHO05D008722 2.3e-18 96.7 170 38.8
AagrBONN_evm.TU.Sc2ySwM_362.2054 Anthoceros agrestis HOM05D007181 ORTHO05D008722 6.6e-18 95.1 112 49.1
Pp3c8_19140 Physcomitrium patens HOM05D007181 ORTHO05D008722 6.6e-18 95.1 121 43.8
FAN24G0107 Fragaria x ananassa HOM05D007181 ORTHO05D008722 9.5e-17 91.3 142 46.5
Mapoly0126s0033 Marchantia polymorpha HOM05D007181 ORTHO05D008722 1.2e-16 90.9 112 50.0
Carub.0005s3001 Capsella rubella HOM05D007181 ORTHO05D008722 2.1e-16 90.1 134 41.0
VMungo1215G0236 Vigna mungo HOM05D007181 ORTHO05D008722 2.9e-13 79.7 116 40.5
CBR_g39816 Chara braunii HOM05D007181 ORTHO05D008722 5.4e-12 75.5 85 50.6
BcaC07g42693 Brassica carinata HOM05D007181 ORTHO05D008722 9.2e-12 74.7 100 42.0
ATR0099G072 Amborella trichopoda HOM05D007181 ORTHO05D008722 2.7e-11 73.2 74 68.9
TAR624G0264 Trochodendron aralioides HOM05D007181 ORTHO05D008722 6.6e-10 68.6 206 33.5
ATR0099G083 Amborella trichopoda HOM05D007181 ORTHO05D008722 1.9e-09 67.0 66 56.1
Psat3g061320 Pisum sativum HOM05D007181 ORTHO05D008722 6.2e-08 62.0 68 47.1
SMO203G0031 Selaginella moellendorffii HOM05D007181 ORTHO05D008722 1.5e-06 57.4 60 48.3


User provided reference genes

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