Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0615100 Oryza sativa ssp. japonica HOM05D004436 ORTHO05D005179 8.8e-255 883.2 485 100.0
Zm00001eb166800 Zea mays HOM05D004436 ORTHO05D005179 1.8e-146 523.5 412 66.5
HPP92_009424 Vanilla planifolia HOM05D004436 ORTHO05D005179 7.8e-62 242.3 390 40.8
TAR375G0086 Trochodendron aralioides HOM05D004436 ORTHO05D005179 9.6e-60 235.3 424 36.8
Hma1.2p1_0496F.1_g166100 Hydrangea macrophylla HOM05D004436 ORTHO05D005179 3.6e-59 233.4 427 38.2
Lj5A40G74 Lonicera japonica HOM05D004436 ORTHO05D005179 1.1e-58 231.9 400 39.2
Dinv03512 Davidia involucrata HOM05D004436 ORTHO05D005179 2.4e-58 230.7 411 38.9
GSVIVG01016817001 Vitis vinifera HOM05D004436 ORTHO05D005179 4.0e-58 229.9 398 39.7
Actinidia32167 Actinidia chinensis HOM05D004436 ORTHO05D005179 1.5e-57 228.0 404 38.9
MSTRG.22562 Avicennia marina HOM05D004436 ORTHO05D005179 4.5e-57 226.5 402 38.8
Hund20819 Selenicereus undatus HOM05D004436 ORTHO05D005179 4.5e-57 226.5 413 38.3
CiPaw.05G181900 Carya illinoinensis HOM05D004436 ORTHO05D005179 1.1e-55 221.9 400 38.2
CSS0015890 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 1.4e-55 221.5 396 38.1
Dinv30366 Davidia involucrata HOM05D004436 ORTHO05D005179 1.4e-55 221.5 379 39.8
Ciclev10025597m.g Citrus clementina HOM05D004436 ORTHO05D005179 3.2e-55 220.3 399 37.6
Eucgr.F03167 Eucalyptus grandis HOM05D004436 ORTHO05D005179 9.3e-55 218.8 431 37.8
Oeu044709.1 Olea europaea HOM05D004436 ORTHO05D005179 1.6e-54 218.0 424 35.8
PGR119G1065 Punica granatum HOM05D004436 ORTHO05D005179 2.1e-54 217.6 422 37.9
Sopen06g018390 Solanum pennellii HOM05D004436 ORTHO05D005179 3.5e-54 216.9 403 40.2
CiPaw.01G221800 Carya illinoinensis HOM05D004436 ORTHO05D005179 4.6e-54 216.5 400 37.8
Oeu047041.1 Olea europaea HOM05D004436 ORTHO05D005179 4.6e-54 216.5 388 36.9
Sc12g0010440 Simmondsia chinensis HOM05D004436 ORTHO05D005179 4.6e-54 216.5 428 36.4
Solyc06g053330.4 Solanum lycopersicum HOM05D004436 ORTHO05D005179 4.6e-54 216.5 403 40.2
Thecc.03G227200 Theobroma cacao HOM05D004436 ORTHO05D005179 4.6e-54 216.5 419 35.8
PGSC0003DMG400016304 Solanum tuberosum HOM05D004436 ORTHO05D005179 6.0e-54 216.1 408 38.2
vmacro22224 Vaccinium macrocarpon HOM05D004436 ORTHO05D005179 1.0e-53 215.3 395 37.2
Glyma.15G165300 Glycine max HOM05D004436 ORTHO05D005179 1.3e-53 214.9 392 39.3
CDE07G0038 Ceratophyllum demersum HOM05D004436 ORTHO05D005179 1.8e-53 214.5 434 35.7
CANSAT56G1493 Cannabis sativa HOM05D004436 ORTHO05D005179 3.0e-53 213.8 395 37.7
CAN.G540.4 Capsicum annuum HOM05D004436 ORTHO05D005179 3.0e-53 213.8 399 38.1
Peaxi162Scf00647g00219 Petunia axillaris HOM05D004436 ORTHO05D005179 6.7e-53 212.6 398 36.2
ClCG09G000840 Citrullus lanatus HOM05D004436 ORTHO05D005179 1.5e-52 211.5 398 36.9
Rhsim08G0236100 Rhododendron simsii HOM05D004436 ORTHO05D005179 1.5e-52 211.5 422 36.0
CsaV3_7G034640 Cucumis sativus L. HOM05D004436 ORTHO05D005179 9.6e-52 208.8 395 38.0
Peaxi162Scf00943g00014 Petunia axillaris HOM05D004436 ORTHO05D005179 9.6e-52 208.8 420 35.5
Duzib205G0267 Durio zibethinus HOM05D004436 ORTHO05D005179 1.3e-51 208.4 429 35.2
Lj6g0016044 Lotus japonicus HOM05D004436 ORTHO05D005179 1.3e-51 208.4 394 36.5
Carub.0003s1351 Capsella rubella HOM05D004436 ORTHO05D005179 3.7e-51 206.8 398 34.2
Nitab4.5_0000035g0090 Nicotiana tabacum HOM05D004436 ORTHO05D005179 4.8e-51 206.5 401 37.9
MELO3C024372.2 Cucumis melo HOM05D004436 ORTHO05D005179 1.1e-50 205.3 396 37.6
FAN09G2135 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.1e-50 205.3 401 38.2
Haze_15997 Corylus avellana HOM05D004436 ORTHO05D005179 1.8e-50 204.5 446 36.3
FAN02G3564 Fragaria x ananassa HOM05D004436 ORTHO05D005179 3.1e-50 203.8 401 38.4
HanXRQChr10g0312341 Helianthus annuus HOM05D004436 ORTHO05D005179 3.1e-50 203.8 418 34.9
CSS0033207 Camellia sinensis var. sinensis HOM05D004436 ORTHO05D005179 4.0e-50 203.4 395 36.7
FAN05G5343 Fragaria x ananassa HOM05D004436 ORTHO05D005179 4.0e-50 203.4 398 37.9
Phvul.009G236700 Phaseolus vulgaris HOM05D004436 ORTHO05D005179 6.9e-50 202.6 392 37.0
COL.COLO4_30482 Corchorus olitorius HOM05D004436 ORTHO05D005179 1.2e-49 201.8 434 35.7
Lsat_1_v5_gn_5_135221 Lactuca sativa HOM05D004436 ORTHO05D005179 1.5e-49 201.4 413 33.4
RcHm_v2.0_Chr2g0144531 Rosa chinensis HOM05D004436 ORTHO05D005179 1.5e-49 201.4 399 38.1
AUR62009860 Chenopodium quinoa HOM05D004436 ORTHO05D005179 2.0e-49 201.1 425 35.1
Gohir.A03G000500 Gossypium hirsutum HOM05D004436 ORTHO05D005179 2.0e-49 201.1 413 33.4
arahy.Tifrunner.gnm1.ann1.4RDH3B Arachis hypogaea HOM05D004436 ORTHO05D005179 3.4e-49 200.3 396 36.4
DCAR_026403 Daucus carota HOM05D004436 ORTHO05D005179 3.4e-49 200.3 396 34.1
FvH4_6g34180 Fragaria vesca HOM05D004436 ORTHO05D005179 3.4e-49 200.3 401 37.7
Potri.001G198600 Populus trichocarpa HOM05D004436 ORTHO05D005179 4.5e-49 199.9 417 35.5
Nitab4.5_0012713g0010 Nicotiana tabacum HOM05D004436 ORTHO05D005179 5.8e-49 199.5 401 36.2
arahy.Tifrunner.gnm1.ann1.0TY6IG Arachis hypogaea HOM05D004436 ORTHO05D005179 7.6e-49 199.1 397 36.8
Lalb_Chr08g0233321 Lupinus albus HOM05D004436 ORTHO05D005179 7.6e-49 199.1 392 34.4
Aa31LG8G1130 Aethionema arabicum HOM05D004436 ORTHO05D005179 1.7e-48 198.0 396 34.3
CARHR088750 Cardamine hirsuta HOM05D004436 ORTHO05D005179 1.7e-48 198.0 398 33.7
TWI23G0436 Tripterygium wilfordii HOM05D004436 ORTHO05D005179 1.7e-48 198.0 402 36.8
unitig_26.g9010 Utricularia gibba HOM05D000572 ORTHO05D002399 1.7e-48 198.0 403 36.0
Prupe.3G044800 Prunus persica HOM05D004436 ORTHO05D005179 2.2e-48 197.6 401 36.2
Rhsim10G0150900 Rhododendron simsii HOM05D004436 ORTHO05D005179 2.9e-48 197.2 492 32.5
Migut.D00948 Erythranthe guttata HOM05D004436 ORTHO05D005179 3.8e-48 196.8 405 35.3
Gorai.003G182300 Gossypium raimondii HOM05D004436 ORTHO05D005179 4.9e-48 196.4 411 32.8
Cpa.g.sc25.86 Carica papaya HOM05D004436 ORTHO05D005179 1.9e-47 194.5 431 33.4
Sed0007780 Sechium edule HOM05D004436 ORTHO05D005179 1.9e-47 194.5 425 34.6
Gohir.D03G171700 Gossypium hirsutum HOM05D004436 ORTHO05D005179 3.2e-47 193.7 413 32.7
Manes.04G142200 Manihot esculenta HOM05D004436 ORTHO05D005179 3.2e-47 193.7 422 36.5
AL3G26120 Arabidopsis lyrata HOM05D004436 ORTHO05D005179 7.1e-47 192.6 423 32.4
ECA234G4408 Erigeron canadensis HOM05D004436 ORTHO05D005179 1.2e-46 191.8 415 33.5
FAN26G0630 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.6e-46 191.4 399 37.1
MD09G1187900 Malus domestica HOM05D004436 ORTHO05D005179 2.7e-46 190.7 401 35.9
Atru.chr1.3808 Acer truncatum HOM05D004436 ORTHO05D005179 1.0e-45 188.7 381 35.7
ATR0762G049 Amborella trichopoda HOM05D004436 ORTHO05D005179 1.3e-45 188.3 454 33.3
EL10Ac7g16378 Beta vulgaris HOM05D004436 ORTHO05D005179 1.8e-45 188.0 415 33.5
AUR62001510 Chenopodium quinoa HOM05D004436 ORTHO05D005179 3.0e-45 187.2 452 33.4
Manes.11G023100 Manihot esculenta HOM05D004436 ORTHO05D005179 3.9e-45 186.8 451 34.4
THA.LOC104804933 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 6.7e-45 186.0 400 35.0
COL.COLO4_17027 Corchorus olitorius HOM05D004436 ORTHO05D005179 1.5e-44 184.9 368 36.4
Sp3g12180 Schrenkiella parvula HOM05D004436 ORTHO05D005179 1.5e-44 184.9 420 32.6
Aqoxy2G00706 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 3.3e-44 183.7 414 34.1
FvH4_6g47280 Fragaria vesca HOM05D004436 ORTHO05D005179 4.3e-44 183.3 398 35.4
EL10Ac7g16380 Beta vulgaris HOM05D004436 ORTHO05D005179 7.4e-44 182.6 416 33.2
Sabra01G0155800 Salix brachista HOM05D004436 ORTHO05D005179 1.3e-43 181.8 428 34.1
FAN14G2695 Fragaria x ananassa HOM05D004436 ORTHO05D005179 2.1e-43 181.0 437 34.6
SGA_v2.0_scaffold68G22895 Striga asiatica HOM05D004436 ORTHO05D005179 2.8e-43 180.6 400 35.0
Sed0020704 Sechium edule HOM05D004436 ORTHO05D005179 4.8e-43 179.9 389 33.4
PSO135G0558 Papaver somniferum HOM05D004436 ORTHO05D005179 8.2e-43 179.1 398 33.4
RcHm_v2.0_Chr2g0166351 Rosa chinensis HOM05D004436 ORTHO05D005179 1.8e-42 177.9 400 34.8
Actinidia21779 Actinidia chinensis HOM05D004436 ORTHO05D005179 3.1e-42 177.2 398 34.4
Ca_02096_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 5.3e-42 176.4 401 35.2
PSO724G1089 Papaver somniferum HOM05D004436 ORTHO05D005179 1.2e-41 175.3 398 33.2
Ah.07g197300 Amaranthus hybridus HOM05D004436 ORTHO05D005179 3.4e-41 173.7 421 32.3
Thhalv10020760m.g Eutrema salsugineum HOM05D004436 ORTHO05D005179 5.8e-41 172.9 389 33.4
Medtr7g104810 Medicago truncatula HOM05D004436 ORTHO05D005179 7.6e-41 172.6 420 33.3
Psat1g144000 Pisum sativum HOM05D004436 ORTHO05D005179 1.3e-40 171.8 396 33.6
Cc04_g01610 Coffea canephora HOM05D004436 ORTHO05D005179 1.7e-40 171.4 329 37.7
BraA01t04010Z Brassica rapa HOM05D004436 ORTHO05D005179 4.9e-40 169.9 386 32.4
BcaC09g48383 Brassica carinata HOM05D004436 ORTHO05D005179 8.4e-40 169.1 387 32.8
A01p39710 Brassica napus HOM05D004436 ORTHO05D005179 8.4e-40 169.1 386 32.4
C01p50660 Brassica napus HOM05D004436 ORTHO05D005179 8.4e-40 169.1 387 32.8
BolC1t05015H Brassica oleracea HOM05D004436 ORTHO05D005179 8.4e-40 169.1 387 32.8
AT3G13940 Arabidopsis thaliana HOM05D004436 ORTHO05D005179 1.1e-39 168.7 424 30.9
BcaB04g20967 Brassica carinata HOM05D004436 ORTHO05D005179 5.5e-39 166.4 397 33.0
Medtr2g037460 Medicago truncatula HOM05D004436 ORTHO05D005179 7.9e-38 162.5 406 33.0
FAN24G2018 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.0e-37 162.2 392 32.7
Medtr2g037880 Medicago truncatula HOM05D004436 ORTHO05D005179 5.1e-37 159.8 418 32.5
TPR.G13789 Trifolium pratense HOM05D004436 ORTHO05D005179 7.4e-36 156.0 399 33.6
AagrBONN_evm.TU.Sc2ySwM_368.2707 Anthoceros agrestis HOM05D004436 ORTHO05D005179 2.2e-35 154.5 467 33.0
Nitab4.5_0004287g0020 Nicotiana tabacum HOM05D004436 ORTHO05D005179 2.0e-33 147.9 397 32.2
QL05p009436 Quercus lobata HOM05D004436 ORTHO05D005179 5.0e-32 143.3 604 25.5
Pp3c8_24340 Physcomitrium patens HOM05D004436 ORTHO05D005179 4.2e-31 140.2 445 28.5
DCAR_023423 Daucus carota HOM05D004436 ORTHO05D005179 3.0e-29 134.0 250 35.6
Nn6g35749 Nelumbo nucifera HOM05D004436 ORTHO05D005179 1.1e-28 132.1 393 27.0
FvH4_2g14600 Fragaria vesca HOM05D004436 ORTHO05D005179 2.5e-28 131.0 290 34.8
Lj6g0018808 Lotus japonicus HOM05D004436 ORTHO05D005179 2.5e-28 131.0 263 35.0
Carub.0003s3547 Capsella rubella HOM05D004436 ORTHO05D005179 1.8e-26 124.8 367 28.6
TPR.G16505 Trifolium pratense HOM05D004436 ORTHO05D005179 2.4e-26 124.4 225 35.6
Peaxi162Scf00060g02815 Petunia axillaris HOM05D004436 ORTHO05D005179 3.1e-26 124.0 419 27.4
Aqoxy7G00272 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 6.9e-26 122.9 212 38.7
MD17G1172300 Malus domestica HOM05D004436 ORTHO05D005179 1.7e-24 118.2 288 34.7
SEGI_28110 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 1.4e-23 115.2 293 32.1
Mapoly0063s0055 Marchantia polymorpha HOM05D004436 ORTHO05D005179 2.5e-23 114.4 311 30.5
Ah.08g216510 Amaranthus hybridus HOM05D004436 ORTHO05D005179 1.4e-21 108.6 317 31.2
Ca_27339_v3 Cicer arietinum L. HOM05D004436 ORTHO05D005179 8.8e-21 105.9 286 31.5
Aqoxy2G02914 Aquilegia oxysepala HOM05D004436 ORTHO05D005179 9.7e-20 102.4 143 42.7
FAN14G5104 Fragaria x ananassa HOM05D002326 ORTHO05D005179 1.7e-19 101.7 237 33.3
THA.LOC104822769 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 4.2e-15 87.0 225 34.7
Oeu004353.1 Olea europaea HOM05D004436 ORTHO05D005179 7.2e-15 86.3 101 43.6
CBR_g45967 Chara braunii HOM05D004436 ORTHO05D005179 6.1e-14 83.2 428 22.9
Dinv21190 Davidia involucrata HOM05D004436 ORTHO05D005179 8.0e-14 82.8 91 46.2
FAN20G3048 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.0e-13 82.4 246 30.1
FAN27G1625 Fragaria x ananassa HOM05D004436 ORTHO05D005179 1.4e-13 82.0 256 30.1
FAN15G1241 Fragaria x ananassa HOM05D004436 ORTHO05D005179 5.7e-12 76.6 167 32.9
PGSC0003DMG400002436 Solanum tuberosum HOM05D004436 ORTHO05D005179 1.7e-11 75.1 96 49.0
SEGI_22335 Sequoiadendron giganteum HOM05D004436 ORTHO05D005179 8.2e-11 72.8 296 26.7
AUR62000997 Chenopodium quinoa HOM05D004436 ORTHO05D005179 4.5e-09 67.0 90 40.0
ATR0185G001 Amborella trichopoda HOM05D004436 ORTHO05D005179 3.8e-08 63.9 172 32.6
SMO144G0124 Selaginella moellendorffii HOM05D004436 ORTHO05D005179 3.8e-08 63.9 93 43.0
THA.LOC104822775 Tarenaya hassleriana HOM05D004436 ORTHO05D005179 3.8e-08 63.9 100 40.0


User provided reference genes

Program Settings