Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0607100 Oryza sativa ssp. japonica HOM05D007439 ORTHO05D009294 4.0e-133 479.6 672 100.0
Zm00001eb167160 Zea mays HOM05D007439 ORTHO05D009294 4.4e-63 246.9 176 77.3
HPP92_005808 Vanilla planifolia HOM05D007439 ORTHO05D009294 9.0e-24 116.3 151 41.7
Eucgr.E01795 Eucalyptus grandis HOM05D007439 ORTHO05D009294 4.5e-23 114.0 152 40.8
Eucgr.E01800 Eucalyptus grandis HOM05D007439 ORTHO05D009294 7.6e-23 113.2 152 40.8
Gohir.A05G145400 Gossypium hirsutum HOM05D007439 ORTHO05D009294 2.2e-22 111.7 167 41.9
HPP92_005782 Vanilla planifolia HOM05D007439 ORTHO05D009294 6.4e-22 110.2 141 42.6
CANSAT80G1475 Cannabis sativa HOM05D007439 ORTHO05D009294 5.5e-21 107.1 102 52.0
CANSAT80G1820 Cannabis sativa HOM05D007439 ORTHO05D009294 5.5e-21 107.1 102 52.0
Duzib235G1301 Durio zibethinus HOM05D007439 ORTHO05D009294 9.3e-21 106.3 145 41.4
Aqoxy7G03766 Aquilegia oxysepala HOM05D007439 ORTHO05D009294 2.1e-20 105.1 167 34.1
Prupe.4G111800 Prunus persica HOM05D007439 ORTHO05D009294 3.5e-20 104.4 148 41.2
PGR042G2360 Punica granatum HOM05D007439 ORTHO05D009294 4.6e-20 104.0 156 37.2
Ciclev10014445m.g Citrus clementina HOM05D007439 ORTHO05D009294 6.0e-20 103.6 141 41.1
Gorai.009G151900 Gossypium raimondii HOM05D007439 ORTHO05D009294 6.0e-20 103.6 144 42.4
Gohir.D05G147800 Gossypium hirsutum HOM05D007439 ORTHO05D009294 7.9e-20 103.2 144 42.4
Sed0017437 Sechium edule HOM05D007439 ORTHO05D009294 1.0e-19 102.8 153 37.9
MELO3C021752.2 Cucumis melo HOM05D007439 ORTHO05D009294 1.3e-19 102.4 153 37.3
CsaV3_1G046310 Cucumis sativus L. HOM05D007439 ORTHO05D009294 2.3e-19 101.7 153 37.9
Eucgr.E01847 Eucalyptus grandis HOM05D007439 ORTHO05D009294 2.3e-19 101.7 131 41.2
ECA238G3489 Erigeron canadensis HOM05D000031 ORTHO05D000030 8.7e-19 99.8 149 38.9
PSO210G3018 Papaver somniferum HOM05D007439 ORTHO05D009294 8.7e-19 99.8 167 35.9
DCAR_003780 Daucus carota HOM05D007439 ORTHO05D009294 1.1e-18 99.4 159 39.6
Eucgr.E01870 Eucalyptus grandis HOM05D007439 ORTHO05D009294 1.5e-18 99.0 131 38.9
Actinidia22395 Actinidia chinensis HOM05D007439 ORTHO05D009294 1.9e-18 98.6 94 48.9
AUR62034958 Chenopodium quinoa HOM05D007439 ORTHO05D009294 4.8e-17 94.0 159 37.7
PSO210G5823 Papaver somniferum HOM05D007439 ORTHO05D009294 6.2e-17 93.6 166 34.3
AUR62035769 Chenopodium quinoa HOM05D007439 ORTHO05D009294 2.4e-16 91.7 159 36.5
ATR0049G016 Amborella trichopoda HOM05D007439 ORTHO05D009294 9.0e-16 89.7 133 37.6
Phvul.008G046300 Phaseolus vulgaris HOM05D007439 ORTHO05D009294 1.5e-15 89.0 97 46.4
CAN.G149.50 Capsicum annuum HOM05D007439 ORTHO05D009294 2.0e-15 88.6 102 40.2
Eucgr.E01833 Eucalyptus grandis HOM05D007439 ORTHO05D009294 2.0e-15 88.6 99 40.4
Glyma.09G242500 Glycine max HOM05D007439 ORTHO05D009294 2.0e-15 88.6 99 45.5
SGA_v2.0_scaffold298G47685 Striga asiatica HOM05D007439 ORTHO05D009294 2.6e-15 88.2 161 36.0
PGSC0003DMG400010332 Solanum tuberosum HOM05D007439 ORTHO05D009294 1.3e-14 85.9 92 42.4
CiPaw.09G077400 Carya illinoinensis HOM05D007439 ORTHO05D009294 3.8e-14 84.3 95 44.2
QL11p017775 Quercus lobata HOM05D000038 ORTHO05D000143 3.8e-14 84.3 104 41.3
Solyc02g068890.3 Solanum lycopersicum HOM05D007439 ORTHO05D009294 3.8e-14 84.3 93 40.9
Cfa000712 Carpinus fangiana HOM05D007439 ORTHO05D009294 4.9e-14 84.0 96 44.8
FAN25G2844 Fragaria x ananassa HOM05D002343 ORTHO05D004258 4.9e-14 84.0 127 39.4
QL11p016354 Quercus lobata HOM05D002343 ORTHO05D004258 4.9e-14 84.0 94 43.6
Sopen02g017990 Solanum pennellii HOM05D007439 ORTHO05D009294 6.5e-14 83.6 93 40.9
VMungo1383G3026 Vigna mungo HOM05D007439 ORTHO05D009294 6.5e-14 83.6 97 45.4
Ah.11g038960 Amaranthus hybridus HOM05D007439 ORTHO05D009294 1.1e-13 82.8 156 34.6
MD05G1251800 Malus domestica HOM05D007439 ORTHO05D009294 1.9e-13 82.0 93 40.9
ClCG01G009470 Citrullus lanatus HOM05D007439 ORTHO05D009294 2.5e-13 81.6 93 43.0
MBI03_g16306_MAGBIO Magnolia biondii HOM05D007439 ORTHO05D009294 3.2e-13 81.3 105 42.9
CSS0002129 Camellia sinensis var. sinensis HOM05D007439 ORTHO05D009294 5.5e-13 80.5 84 46.4
Eucgr.E01806 Eucalyptus grandis HOM05D007439 ORTHO05D009294 7.1e-13 80.1 91 44.0
HanXRQChr14g0447351 Helianthus annuus HOM05D007439 ORTHO05D009294 7.1e-13 80.1 95 38.9
Manes.15G044700 Manihot esculenta HOM05D007439 ORTHO05D009294 7.1e-13 80.1 105 41.9
Rhsim08G0175300 Rhododendron simsii HOM05D007439 ORTHO05D009294 7.1e-13 80.1 85 45.9
TAR633G0007 Trochodendron aralioides HOM05D007439 ORTHO05D009294 9.3e-13 79.7 107 43.0
Lalb_Chr01g0021581 Lupinus albus HOM05D007439 ORTHO05D009294 1.6e-12 79.0 94 40.4
Lj3g0009249 Lotus japonicus HOM05D007439 ORTHO05D009294 3.5e-12 77.8 107 39.3
Dinv02254 Davidia involucrata HOM05D007439 ORTHO05D009294 6.0e-12 77.0 85 44.7
Nitab4.5_0000029g0150 Nicotiana tabacum HOM05D007439 ORTHO05D009294 6.0e-12 77.0 134 38.8
Atru.chr10.530 Acer truncatum HOM05D007439 ORTHO05D009294 1.3e-11 75.9 104 39.4
Cc09_g06120 Coffea canephora HOM05D007439 ORTHO05D009294 1.3e-11 75.9 89 39.3
Psat0s929g0160 Pisum sativum HOM05D007439 ORTHO05D009294 1.3e-11 75.9 117 38.5
Thecc.06G142600 Theobroma cacao HOM05D007439 ORTHO05D009294 1.3e-11 75.9 110 39.1
Thecc.06G142800 Theobroma cacao HOM05D007439 ORTHO05D009294 1.3e-11 75.9 110 39.1
TWI38G1636 Tripterygium wilfordii HOM05D007439 ORTHO05D009294 1.3e-11 75.9 110 41.8
Lsat_1_v5_gn_2_63940 Lactuca sativa HOM05D007439 ORTHO05D009294 2.3e-11 75.1 96 44.8
Potri.015G121700 Populus trichocarpa HOM05D007439 ORTHO05D009294 3.0e-11 74.7 102 41.2
Sp7g18380 Schrenkiella parvula HOM05D004848 ORTHO05D006859 3.9e-11 74.3 120 37.5
Migut.F01393 Erythranthe guttata HOM05D007439 ORTHO05D009294 1.1e-10 72.8 104 41.3
Peaxi162Scf00149g00061 Petunia axillaris HOM05D007439 ORTHO05D009294 1.5e-10 72.4 79 44.3
RcHm_v2.0_Chr5g0020081 Rosa chinensis HOM05D007439 ORTHO05D009294 1.5e-10 72.4 79 45.6
COL.COLO4_30991 Corchorus olitorius HOM05D007439 ORTHO05D009294 1.9e-10 72.0 83 41.0
Thhalv10027430m.g Eutrema salsugineum HOM05D007439 ORTHO05D009294 1.9e-10 72.0 97 36.1
Lj2C350T3 Lonicera japonica HOM05D007439 ORTHO05D009294 1.9e-10 72.0 85 41.2
Nitab4.5_0001288g0070 Nicotiana tabacum HOM05D002343 ORTHO05D004258 1.9e-10 72.0 121 38.8
Cpa.g.sc135.9 Carica papaya HOM05D007439 ORTHO05D009294 2.5e-10 71.6 85 40.0
Medtr7g405940 Medicago truncatula HOM05D007439 ORTHO05D009294 2.5e-10 71.6 94 38.3
Oeu060350.1 Olea europaea HOM05D007439 ORTHO05D009294 2.5e-10 71.6 96 41.7
MSTRG.16346 Avicennia marina HOM05D007439 ORTHO05D009294 4.3e-10 70.9 102 40.2
Medtr7g007400 Medicago truncatula HOM05D007439 ORTHO05D009294 4.3e-10 70.9 103 37.9
Nitab4.5_0013428g0020 Nicotiana tabacum HOM05D007439 ORTHO05D009294 4.3e-10 70.9 87 41.4
Sabra15G0138100 Salix brachista HOM05D007439 ORTHO05D009294 4.3e-10 70.9 102 40.2
SHI24856 Sapria himalayana HOM05D007439 ORTHO05D009294 5.7e-10 70.5 109 33.9
arahy.Tifrunner.gnm1.ann1.FQ7S35 Arachis hypogaea HOM05D002637 ORTHO05D008095 7.4e-10 70.1 92 38.0
SalBow6G0510 Salvia bowleyana HOM05D007439 ORTHO05D009294 7.4e-10 70.1 104 40.4
Sc02g0008330 Simmondsia chinensis HOM05D007439 ORTHO05D009294 9.7e-10 69.7 105 37.1
EL10Ac1g02315 Beta vulgaris HOM05D007439 ORTHO05D009294 1.3e-09 69.3 107 36.4
Ca_04050_v3 Cicer arietinum L. HOM05D007439 ORTHO05D009294 1.3e-09 69.3 103 37.9
CDE06G0761 Ceratophyllum demersum HOM05D000063 ORTHO05D002147 1.6e-09 68.9 102 36.3
SEGI_11644 Sequoiadendron giganteum HOM05D007439 ORTHO05D009294 1.6e-09 68.9 142 31.7
A01p11750 Brassica napus HOM05D007439 ORTHO05D009294 2.2e-09 68.6 102 41.2
BraA01t01117Z Brassica rapa HOM05D007439 ORTHO05D009294 2.2e-09 68.6 102 41.2
MD10G1232900 Malus domestica HOM05D007439 ORTHO05D009294 2.8e-09 68.2 71 45.1
Thecc.06G142300 Theobroma cacao HOM05D007439 ORTHO05D009294 3.7e-09 67.8 100 39.0
Haze_06039 Corylus avellana HOM05D007439 ORTHO05D009294 4.8e-09 67.4 102 39.2
FAN21G0604 Fragaria x ananassa HOM05D002343 ORTHO05D004258 4.8e-09 67.4 102 40.2
FvH4_3g12270 Fragaria vesca HOM05D007439 ORTHO05D009294 6.3e-09 67.0 102 39.2
FAN16G2455 Fragaria x ananassa HOM05D002343 ORTHO05D004258 6.3e-09 67.0 102 39.2
Aa31LG6G2350 Aethionema arabicum HOM05D004848 ORTHO05D006859 8.2e-09 66.6 94 41.5
BcaNung01745 Brassica carinata HOM05D007439 ORTHO05D009294 8.2e-09 66.6 102 40.2
BcaC09g51360 Brassica carinata HOM05D007439 ORTHO05D009294 1.4e-08 65.9 94 41.5
C01p13940 Brassica napus HOM05D007439 ORTHO05D009294 1.4e-08 65.9 94 41.5
BolC1t01361H Brassica oleracea HOM05D007439 ORTHO05D009294 1.4e-08 65.9 94 41.5
CARHR226670 Cardamine hirsuta HOM05D007439 ORTHO05D009294 1.8e-08 65.5 94 41.5
Carub.0007s2132 Capsella rubella HOM05D007439 ORTHO05D009294 3.1e-08 64.7 94 41.5
AL7G34150 Arabidopsis lyrata HOM05D004848 ORTHO05D009294 4.1e-08 64.3 94 40.4
Haze_06038 Corylus avellana HOM05D007439 ORTHO05D009294 4.1e-08 64.3 94 41.5
SEGI_34940 Sequoiadendron giganteum HOM05D007439 ORTHO05D009294 4.1e-08 64.3 129 31.8
THA.LOC104811547 Tarenaya hassleriana HOM05D007439 ORTHO05D009294 5.3e-08 63.9 94 40.4
AT4G19890 Arabidopsis thaliana HOM05D007439 ORTHO05D009294 6.9e-08 63.5 94 40.4
BcaB06g28505 Brassica carinata HOM05D007439 ORTHO05D009294 5.0e-06 57.4 78 41.0
BolC4t27551H Brassica oleracea HOM05D007439 ORTHO05D009294 5.0e-06 57.4 78 41.0


User provided reference genes

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