Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0606900 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D017099 4.9e-228 794.3 442 100.0
Os11g0606500 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D037047 2.2e-156 556.2 442 75.8
Os11g0604900 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D037047 8.2e-151 537.7 441 72.6
Zm00001eb115030 Zea mays HOM05D000011 ORTHO05D037047 3.2e-110 402.9 424 61.6
Os11g0605600 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D017099 1.6e-61 241.1 247 54.7
Zm00001eb419310 Zea mays HOM05D000011 ORTHO05D017099 1.6e-58 231.1 419 43.2
Os11g0480000 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D017099 2.2e-55 220.7 428 40.4
Zm00001eb283180 Zea mays HOM05D000011 ORTHO05D017099 7.2e-54 215.7 415 41.7
Os10g0131800 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D017099 5.7e-51 206.1 442 37.3
Os11g0689100 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D017099 5.7e-51 206.1 448 37.9
Zm00001eb419320 Zea mays HOM05D000011 ORTHO05D017099 2.2e-50 204.1 411 41.4
Os11g0654100 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D012693 3.0e-20 104.0 384 27.6
Os07g0197300 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D000157 9.1e-17 92.4 403 26.3
Os11g0655700 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D012693 1.6e-16 91.7 393 27.2
Os06g0158300 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D000157 1.0e-15 89.0 415 30.1
Os07g0197500 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D000157 1.7e-15 88.2 400 25.8
Os12g0198900 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D000157 1.1e-14 85.5 371 28.8
Os11g0550500 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D000157 4.3e-14 83.6 401 28.2
Os07g0599100 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D000157 6.1e-13 79.7 451 29.5
Os11g0655300 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D012693 8.0e-13 79.3 383 26.6
Os02g0475500 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D018062 1.8e-12 78.2 427 27.4
Zm00001eb416830 Zea mays HOM05D000011 ORTHO05D012693 3.0e-12 77.4 413 26.9
Os08g0388300 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D000157 8.9e-12 75.9 437 27.5
Manes.06G108800 Manihot esculenta HOM05D000011 ORTHO05D000157 1.2e-11 75.5 388 27.1
Os08g0539700 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D026001 1.2e-11 75.5 430 26.7
Os02g0301800 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D000157 2.0e-11 74.7 446 25.6
Glyma.08G319300 Glycine max HOM05D000011 ORTHO05D000157 4.4e-11 73.6 394 25.6
Os07g0141700 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D012693 5.7e-11 73.2 373 24.4
Os11g0598500 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D012693 9.8e-11 72.4 415 23.9
CAN.G905.24 Capsicum annuum HOM05D000011 ORTHO05D000157 1.7e-10 71.6 383 27.7
Potri.012G083700 Populus trichocarpa HOM05D000011 ORTHO05D000157 2.9e-10 70.9 372 25.0
Thecc.03G313200 Theobroma cacao HOM05D000011 ORTHO05D000157 3.7e-10 70.5 377 31.8
Zm00001eb271410 Zea mays HOM05D000011 ORTHO05D000157 4.9e-10 70.1 325 25.5
Potri.005G035700 Populus trichocarpa HOM05D000011 ORTHO05D000157 6.4e-10 69.7 391 29.2
CSS0029187 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000157 8.3e-10 69.3 413 29.8
FAN04G2102 Fragaria x ananassa HOM05D000011 ORTHO05D000157 1.8e-09 68.2 401 32.2
Os11g0646300 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D012693 2.4e-09 67.8 372 26.3
Glyma.08G317400 Glycine max HOM05D000011 ORTHO05D000157 3.2e-09 67.4 391 25.3
Os11g0238000 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D000157 4.1e-09 67.0 79 45.6
FvH4_5g23420 Fragaria vesca HOM05D000011 ORTHO05D000157 5.4e-09 66.6 377 30.8
Aqoxy5G00900 Aquilegia oxysepala HOM05D000011 ORTHO05D000157 7.0e-09 66.2 401 24.7
Medtr3g056190 Medicago truncatula HOM05D000011 ORTHO05D000157 7.0e-09 66.2 405 25.4
TWI60G0532 Tripterygium wilfordii HOM05D000011 ORTHO05D000157 7.0e-09 66.2 399 27.3
Potri.018G138500 Populus trichocarpa HOM05D000011 ORTHO05D000018 9.2e-09 65.9 377 25.7
VMungo0540G2076 Vigna mungo HOM05D000011 ORTHO05D000157 9.2e-09 65.9 381 29.4
Os11g0225100 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D018064 1.2e-08 65.5 443 25.5
Medtr5g027870 Medicago truncatula HOM05D000011 ORTHO05D000157 1.6e-08 65.1 399 24.3
Os01g0269800 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D012693 1.6e-08 65.1 413 29.8
Os08g0387700 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D000157 1.6e-08 65.1 421 24.0
Os11g0645800 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D012693 1.6e-08 65.1 391 24.8
Os11g0647866 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D012693 1.6e-08 65.1 391 24.8
Medtr5g027910 Medicago truncatula HOM05D000011 ORTHO05D000157 2.0e-08 64.7 241 32.0
Nn7g36884 Nelumbo nucifera HOM05D000011 ORTHO05D000157 2.0e-08 64.7 210 27.6
Potri.011G165700 Populus trichocarpa HOM05D000011 ORTHO05D000157 2.0e-08 64.7 207 30.9
FAN13G0039 Fragaria x ananassa HOM05D000011 ORTHO05D000157 2.7e-08 64.3 151 35.8
Medtr3g056320 Medicago truncatula HOM05D000011 ORTHO05D000157 2.7e-08 64.3 400 25.0
Os08g0373000 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D014245 2.7e-08 64.3 306 25.2
Os11g0249000 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D000157 2.7e-08 64.3 450 26.9
Actinidia23620 Actinidia chinensis HOM05D000011 ORTHO05D000157 3.5e-08 63.9 246 29.7
Duzib177G0808 Durio zibethinus HOM05D000011 ORTHO05D000157 3.5e-08 63.9 351 26.5
Nn7g36778 Nelumbo nucifera HOM05D000011 ORTHO05D000157 3.5e-08 63.9 355 25.4
RcHm_v2.0_Chr7g0212481 Rosa chinensis HOM05D000011 ORTHO05D000157 3.5e-08 63.9 377 30.0
RcHm_v2.0_Chr7g0212491 Rosa chinensis HOM05D000011 ORTHO05D000157 3.5e-08 63.9 271 28.4
Nn7g36877 Nelumbo nucifera HOM05D000011 ORTHO05D000157 4.6e-08 63.5 210 28.1
Os08g0539900 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D026001 4.6e-08 63.5 413 26.9
Cfa011812 Carpinus fangiana HOM05D000011 ORTHO05D000157 5.9e-08 63.2 375 32.0
Psat2g140480 Pisum sativum HOM05D000011 ORTHO05D000157 5.9e-08 63.2 208 32.2
Zm00001eb355100 Zea mays HOM05D000011 ORTHO05D012693 5.9e-08 63.2 401 25.2
CSS0025652 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000157 7.8e-08 62.8 404 29.5
CiPaw.02G067300 Carya illinoinensis HOM05D000011 ORTHO05D000157 7.8e-08 62.8 432 29.6
Medtr5g027860 Medicago truncatula HOM05D000011 ORTHO05D000157 7.8e-08 62.8 206 33.0
Sabra18G0113600 Salix brachista HOM05D000011 ORTHO05D000018 7.8e-08 62.8 376 25.5
Cfa014931 Carpinus fangiana HOM05D000011 ORTHO05D000157 1.0e-07 62.4 375 30.9
Haze_11585 Corylus avellana HOM05D000011 ORTHO05D000157 1.0e-07 62.4 387 27.4
Dinv22842 Davidia involucrata HOM05D000011 ORTHO05D000157 1.0e-07 62.4 368 30.7
Rhsim02G0078700 Rhododendron simsii HOM05D000011 ORTHO05D000157 1.0e-07 62.4 348 26.4
vmacro17388 Vaccinium macrocarpon HOM05D000011 ORTHO05D000157 1.0e-07 62.4 208 30.8
Eucgr.D02629 Eucalyptus grandis HOM05D000011 ORTHO05D000157 1.3e-07 62.0 216 31.9
FAN09G1900 Fragaria x ananassa HOM05D000011 ORTHO05D000157 1.3e-07 62.0 271 28.4
FAN13G2629 Fragaria x ananassa HOM05D000011 ORTHO05D000157 1.3e-07 62.0 271 28.4
Glyma.08G317700 Glycine max HOM05D000011 ORTHO05D000157 1.3e-07 62.0 391 25.6
Nitab4.5_0016557g0010 Nicotiana tabacum HOM05D000011 ORTHO05D000157 1.3e-07 62.0 205 30.2
Os02g0300500 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D000157 1.3e-07 62.0 141 29.1
CSS0033798 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D000157 1.7e-07 61.6 307 26.1
FvH4_5g23430 Fragaria vesca HOM05D000011 ORTHO05D000157 1.7e-07 61.6 203 32.0
FAN18G1092 Fragaria x ananassa HOM05D000011 ORTHO05D000157 1.7e-07 61.6 203 32.0
FAN18G2663 Fragaria x ananassa HOM05D000011 ORTHO05D000157 1.7e-07 61.6 203 32.0
MD14G1174200 Malus domestica HOM05D000011 ORTHO05D000157 1.7e-07 61.6 389 26.5
Os02g0478300 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D018062 1.7e-07 61.6 184 34.2
Atru.chr4.1753 Acer truncatum HOM05D000011 ORTHO05D002639 2.3e-07 61.2 373 26.5
Actinidia31360 Actinidia chinensis HOM05D000011 ORTHO05D000157 2.3e-07 61.2 371 25.3
Actinidia14769 Actinidia chinensis HOM05D000011 ORTHO05D000157 3.0e-07 60.8 328 33.2
arahy.Tifrunner.gnm1.ann1.2JZ6N1 Arachis hypogaea HOM05D000011 ORTHO05D000157 3.0e-07 60.8 204 31.4
arahy.Tifrunner.gnm1.ann1.K1RG44 Arachis hypogaea HOM05D000011 ORTHO05D000157 3.0e-07 60.8 204 31.4
Nn8g40916 Nelumbo nucifera HOM05D000011 ORTHO05D000157 3.0e-07 60.8 394 27.7
TAR624G1321 Trochodendron aralioides HOM05D000011 ORTHO05D000157 3.0e-07 60.8 424 23.3
FAN04G2851 Fragaria x ananassa HOM05D000011 ORTHO05D000157 3.9e-07 60.5 271 28.4
FAN08G0308 Fragaria x ananassa HOM05D000011 ORTHO05D000157 3.9e-07 60.5 271 28.0
Glyma.08G318000 Glycine max HOM05D000011 ORTHO05D000157 3.9e-07 60.5 310 26.8
Os11g0237900 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D000157 3.9e-07 60.5 138 29.7
Os11g0597400 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D012693 3.9e-07 60.5 423 23.2
Sabra08G0142100 Salix brachista HOM05D000011 ORTHO05D000157 3.9e-07 60.5 397 25.9
Zm00001eb131200 Zea mays HOM05D000011 ORTHO05D000157 3.9e-07 60.5 273 34.8
Eucgr.H04240 Eucalyptus grandis HOM05D000011 ORTHO05D000157 5.0e-07 60.1 210 32.4
Nitab4.5_0000743g0040 Nicotiana tabacum HOM05D000011 ORTHO05D000157 5.0e-07 60.1 205 30.2
vmacro17390 Vaccinium macrocarpon HOM05D000011 ORTHO05D000157 5.0e-07 60.1 209 33.0
Duzib068G0532 Durio zibethinus HOM05D000011 ORTHO05D000157 6.6e-07 59.7 398 29.6
MD06G1024500 Malus domestica HOM05D000011 ORTHO05D000157 6.6e-07 59.7 375 28.5
TPR.G19466 Trifolium pratense HOM05D000011 ORTHO05D000157 6.6e-07 59.7 239 29.7
arahy.Tifrunner.gnm1.ann1.R4JJE5 Arachis hypogaea HOM05D000011 ORTHO05D000157 8.6e-07 59.3 207 28.5
Rhsim02G0078400 Rhododendron simsii HOM05D000011 ORTHO05D000157 8.6e-07 59.3 349 26.4
FAN18G3360 Fragaria x ananassa HOM05D000011 ORTHO05D000157 1.1e-06 58.9 151 34.4
Zm00001eb200740 Zea mays HOM05D000011 ORTHO05D018062 1.1e-06 58.9 446 23.3
Psat2g139760 Pisum sativum HOM05D000011 ORTHO05D000157 1.5e-06 58.5 316 26.9
Zm00001eb299830 Zea mays HOM05D000011 ORTHO05D000157 1.5e-06 58.5 77 42.9
FvH4_5g32740 Fragaria vesca HOM05D000011 ORTHO05D000157 1.9e-06 58.2 151 34.4
Nn7g36881 Nelumbo nucifera HOM05D000011 ORTHO05D000157 1.9e-06 58.2 209 31.1
Os11g0598300 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D012693 1.9e-06 58.2 416 24.8
Potri.008G187700 Populus trichocarpa HOM05D000011 ORTHO05D000157 1.9e-06 58.2 352 23.9
THA.LOC104805742 Tarenaya hassleriana HOM05D000011 ORTHO05D000157 1.9e-06 58.2 221 29.4
Thecc.03G313100 Theobroma cacao HOM05D000011 ORTHO05D000157 1.9e-06 58.2 401 29.4
Haze_05239 Corylus avellana HOM05D000011 ORTHO05D000157 2.5e-06 57.8 205 29.3
Rhsim02G0078500 Rhododendron simsii HOM05D000011 ORTHO05D000157 2.5e-06 57.8 370 27.6
THA.LOC104805991 Tarenaya hassleriana HOM05D000011 ORTHO05D000157 2.5e-06 57.8 221 29.4
ECA240G0893 Erigeron canadensis HOM05D000011 ORTHO05D000157 3.3e-06 57.4 217 32.3
Os11g0462500 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D018064 3.3e-06 57.4 135 32.6
Os01g0335700 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D000157 4.3e-06 57.0 128 45.3
QL08p002354 Quercus lobata HOM05D000011 ORTHO05D000157 4.3e-06 57.0 218 26.6
TAR624G0270 Trochodendron aralioides HOM05D000011 ORTHO05D000157 4.3e-06 57.0 390 23.3
Atru.chr4.1747 Acer truncatum HOM05D000011 ORTHO05D002639 5.6e-06 56.6 385 23.6
Actinidia23614 Actinidia chinensis HOM05D000011 ORTHO05D000157 5.6e-06 56.6 209 29.2
CSS0011120 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D002639 5.6e-06 56.6 371 24.5
Medtr3g056410 Medicago truncatula HOM05D000011 ORTHO05D000157 5.6e-06 56.6 397 22.7
Prupe.5G025600 Prunus persica HOM05D000011 ORTHO05D000157 5.6e-06 56.6 374 28.3
Actinidia14772 Actinidia chinensis HOM05D000011 ORTHO05D000157 7.3e-06 56.2 386 30.3
Dinv29023 Davidia involucrata HOM05D000011 ORTHO05D000157 7.3e-06 56.2 125 40.0
Glyma.18G093600 Glycine max HOM05D000011 ORTHO05D000157 7.3e-06 56.2 391 23.8
Os11g0579100 Oryza sativa ssp. japonica HOM05D000011 ORTHO05D012693 7.3e-06 56.2 376 25.5
Zm00001eb042890 Zea mays HOM05D000011 ORTHO05D000157 7.3e-06 56.2 444 25.9
Actinidia31361 Actinidia chinensis HOM05D000011 ORTHO05D000157 9.5e-06 55.8 393 29.3
Eucgr.D02431 Eucalyptus grandis HOM05D000011 ORTHO05D000157 9.5e-06 55.8 186 29.0
Medtr3g056360 Medicago truncatula HOM05D000011 ORTHO05D000157 9.5e-06 55.8 396 22.7
Potri.003G099100 Populus trichocarpa HOM05D000011 ORTHO05D000157 9.5e-06 55.8 280 32.1


User provided reference genes

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