Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0599000 Oryza sativa ssp. japonica HOM05D016364 ORTHO05D018060 0.0e+00 1760.0 885 100.0
Os11g0599101 Oryza sativa ssp. japonica HOM05D016364 ORTHO05D018060 2.5e-151 540.4 934 40.5
Zm00001eb167550 Zea mays HOM05D016364 ORTHO05D018060 3.7e-86 323.9 587 38.2
Os11g0458500 Oryza sativa ssp. japonica HOM05D016364 ORTHO05D018060 1.5e-82 312.0 622 35.9
Os06g0681100 Oryza sativa ssp. japonica HOM05D016364 ORTHO05D018060 2.2e-78 298.1 516 38.2
Os11g0598900 Oryza sativa ssp. japonica HOM05D016364 ORTHO05D018060 5.4e-77 293.5 583 36.0
Os09g0547900 Oryza sativa ssp. japonica HOM05D016364 ORTHO05D018060 3.2e-69 267.7 1074 27.3
Os11g0577700 Oryza sativa ssp. japonica HOM05D016364 ORTHO05D018060 1.4e-19 102.8 198 37.4
Os11g0598800 Oryza sativa ssp. japonica HOM05D026319 ORTHO05D295792 1.0e-14 86.7 168 31.0
CSS0045619 Camellia sinensis var. sinensis HOM05D001961 ORTHO05D002286 2.5e-13 82.0 156 30.1
CSS0037638 Camellia sinensis var. sinensis HOM05D001961 ORTHO05D002286 4.2e-13 81.3 156 31.4
Manes.06G097300 Manihot esculenta HOM05D001961 ORTHO05D002286 1.6e-12 79.3 147 32.0
PGR083G2262 Punica granatum HOM05D001961 ORTHO05D002286 2.1e-12 79.0 147 31.3
CSS0014551 Camellia sinensis var. sinensis HOM05D001961 ORTHO05D002286 6.1e-12 77.4 147 29.3
CSS0045618 Camellia sinensis var. sinensis HOM05D001961 ORTHO05D002286 6.1e-12 77.4 147 29.3
Dinv33700 Davidia involucrata HOM05D001961 ORTHO05D002286 1.0e-11 76.6 135 31.1
Hund09373 Selenicereus undatus HOM05D001961 ORTHO05D002286 1.0e-11 76.6 170 28.8
Rhsim10G0031400 Rhododendron simsii HOM05D001961 ORTHO05D002286 1.4e-11 76.3 123 31.7
BcaB02g10685 Brassica carinata HOM05D001961 ORTHO05D002286 3.0e-11 75.1 143 30.1
CSS0004686 Camellia sinensis var. sinensis HOM05D001961 ORTHO05D002286 4.0e-11 74.7 143 28.7
Gohir.D11G032100 Gossypium hirsutum HOM05D001961 ORTHO05D002286 5.2e-11 74.3 251 26.7
TAR622G0827 Trochodendron aralioides HOM05D001961 ORTHO05D002286 5.2e-11 74.3 123 30.1
PGSC0003DMG400013181 Solanum tuberosum HOM05D001961 ORTHO05D002286 6.7e-11 73.9 135 31.9
Actinidia06064 Actinidia chinensis HOM05D001961 ORTHO05D002286 1.2e-10 73.2 122 32.0
Solyc03g113370.3 Solanum lycopersicum HOM05D001961 ORTHO05D002286 2.0e-10 72.4 134 30.6
Sopen03g032420 Solanum pennellii HOM05D001961 ORTHO05D002286 3.3e-10 71.6 134 30.6
Rhsim10G0032100 Rhododendron simsii HOM05D001961 ORTHO05D002286 4.4e-10 71.2 124 31.5
BcaB05g23091 Brassica carinata HOM05D001961 ORTHO05D002286 7.5e-10 70.5 143 28.7
A06p19750 Brassica napus HOM05D001961 ORTHO05D002286 1.3e-09 69.7 131 28.2
BraA06t25054Z Brassica rapa HOM05D001961 ORTHO05D002286 1.3e-09 69.7 131 28.2
CAN.G999.31 Capsicum annuum HOM05D001961 ORTHO05D002286 1.3e-09 69.7 109 34.9
Rhsim08G0161300 Rhododendron simsii HOM05D001961 ORTHO05D002286 1.3e-09 69.7 147 28.6
BcaC01g01759 Brassica carinata HOM05D001961 ORTHO05D002286 1.7e-09 69.3 131 28.2
BcaC01g01766 Brassica carinata HOM05D001961 ORTHO05D002286 1.7e-09 69.3 131 28.2
C03p72130 Brassica napus HOM05D001961 ORTHO05D002286 1.7e-09 69.3 131 28.2
C03p72190 Brassica napus HOM05D001961 ORTHO05D002286 1.7e-09 69.3 131 28.2
BolC3t19509H Brassica oleracea HOM05D001961 ORTHO05D002286 1.7e-09 69.3 131 28.2
BolC3t19515H Brassica oleracea HOM05D001961 ORTHO05D002286 1.7e-09 69.3 131 28.2
Thecc.03G077100 Theobroma cacao HOM05D001961 ORTHO05D002286 1.7e-09 69.3 111 32.4
vmacro19421 Vaccinium macrocarpon HOM05D001961 ORTHO05D002286 1.7e-09 69.3 147 28.6
A06p19710 Brassica napus HOM05D001961 ORTHO05D002286 3.7e-09 68.2 131 27.5
BraA06t25050Z Brassica rapa HOM05D001961 ORTHO05D002286 3.7e-09 68.2 131 27.5
Oeu006169.1 Olea europaea HOM05D001961 ORTHO05D002286 6.3e-09 67.4 147 27.9
Eucgr.B00398 Eucalyptus grandis HOM05D001961 ORTHO05D002286 8.2e-09 67.0 109 32.1
CSS0044384 Camellia sinensis var. sinensis HOM05D001961 ORTHO05D002286 1.1e-08 66.6 122 32.0
Actinidia34975 Actinidia chinensis HOM05D001961 ORTHO05D002286 1.4e-08 66.2 135 27.4
BcaC03g16564 Brassica carinata HOM05D001961 ORTHO05D002286 1.4e-08 66.2 142 27.5
C02p43790 Brassica napus HOM05D001961 ORTHO05D002286 1.4e-08 66.2 142 27.5
MBI01_g01232_MAGBIO Magnolia biondii HOM05D001961 ORTHO05D002286 5.3e-08 64.3 102 32.4
Os11g0549605 Oryza sativa ssp. japonica HOM05D026319 ORTHO05D301608 1.2e-07 63.2 108 31.5
BcaB05g24094 Brassica carinata HOM05D003941 ORTHO05D011535 1.6e-07 62.8 105 33.3
CSS0012336 Camellia sinensis var. sinensis HOM05D001961 ORTHO05D002286 1.6e-07 62.8 126 29.4
Sp5g19840 Schrenkiella parvula HOM05D003941 ORTHO05D020023 1.6e-07 62.8 145 27.6
Sabra17G0078800 Salix brachista HOM05D001961 ORTHO05D002286 2.7e-07 62.0 136 27.9
FAN13G0464 Fragaria x ananassa HOM05D001961 ORTHO05D002286 5.9e-07 60.8 436 22.0
Haze_05896 Corylus avellana HOM05D001961 ORTHO05D002286 7.7e-07 60.5 314 22.9
TWI81G0197 Tripterygium wilfordii HOM05D001961 ORTHO05D002286 7.7e-07 60.5 131 29.0
Aa31LG2G2330 Aethionema arabicum HOM05D003941 ORTHO05D009447 1.0e-06 60.1 105 29.5
TWI60G1556 Tripterygium wilfordii HOM05D001961 ORTHO05D002286 1.0e-06 60.1 196 28.6
Dinv33730 Davidia involucrata HOM05D001961 ORTHO05D002286 1.7e-06 59.3 149 24.8
FAN04G1134 Fragaria x ananassa HOM05D001961 ORTHO05D002286 1.7e-06 59.3 433 22.2
Nitab4.5_0000909g0070 Nicotiana tabacum HOM05D001961 ORTHO05D002286 3.8e-06 58.2 183 27.3
Zm00001eb149140 Zea mays HOM05D004697 ORTHO05D018060 3.8e-06 58.2 70 40.0
Haze_05897 Corylus avellana HOM05D001961 ORTHO05D002286 5.0e-06 57.8 279 22.6
THA.LOC104821450 Tarenaya hassleriana HOM05D001961 ORTHO05D002286 5.0e-06 57.8 128 33.6
Atru.chr9.2337 Acer truncatum HOM05D001961 ORTHO05D002286 6.5e-06 57.4 175 27.4
CDE07G1845 Ceratophyllum demersum HOM05D001961 ORTHO05D002286 6.5e-06 57.4 473 20.1
Hma1.2p1_0002F.1_g003390 Hydrangea macrophylla HOM05D001961 ORTHO05D002286 6.5e-06 57.4 241 23.7
Nitab4.5_0000003g0050 Nicotiana tabacum HOM05D001961 ORTHO05D002286 6.5e-06 57.4 183 26.8


User provided reference genes

Program Settings