Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0598900 Oryza sativa ssp. japonica HOM05D016364 ORTHO05D018060 0.0e+00 1191.0 612 100.0
Zm00001eb167550 Zea mays HOM05D016364 ORTHO05D018060 4.5e-139 499.2 592 49.7
Os11g0599101 Oryza sativa ssp. japonica HOM05D016364 ORTHO05D018060 1.4e-79 301.6 560 37.5
Os11g0599000 Oryza sativa ssp. japonica HOM05D016364 ORTHO05D018060 1.0e-74 285.4 583 36.0
Os11g0458500 Oryza sativa ssp. japonica HOM05D016364 ORTHO05D018060 2.4e-68 264.2 588 35.2
Os06g0681100 Oryza sativa ssp. japonica HOM05D016364 ORTHO05D018060 2.6e-62 244.2 581 32.9
Os09g0547900 Oryza sativa ssp. japonica HOM05D016364 ORTHO05D018060 1.2e-51 208.8 515 33.2
Os11g0577700 Oryza sativa ssp. japonica HOM05D016364 ORTHO05D018060 1.8e-15 88.6 191 33.0
Zm00001eb149140 Zea mays HOM05D004697 ORTHO05D018060 8.0e-11 73.2 70 54.3
GSVIVG01008079001 Vitis vinifera HOM05D001961 ORTHO05D002286 9.7e-09 66.2 144 29.2
PSO591G0439 Papaver somniferum HOM05D001961 ORTHO05D002286 1.3e-08 65.9 103 33.0
CARHR156630 Cardamine hirsuta HOM05D001961 ORTHO05D002286 6.3e-08 63.5 98 33.7
Hma1.2p1_0104F.1_g050400 Hydrangea macrophylla HOM05D001961 ORTHO05D002286 6.3e-08 63.5 103 31.1
Nn3g17102 Nelumbo nucifera HOM05D001961 ORTHO05D002286 8.2e-08 63.2 144 27.8
Thhalv10010060m.g Eutrema salsugineum HOM05D001961 ORTHO05D002286 1.4e-07 62.4 103 32.0
Gohir.A11G028810 Gossypium hirsutum HOM05D001961 ORTHO05D002286 1.8e-07 62.0 103 29.1
CSS0045618 Camellia sinensis var. sinensis HOM05D001961 ORTHO05D002286 2.4e-07 61.6 103 28.2
Gohir.A03G064400 Gossypium hirsutum HOM05D001961 ORTHO05D002286 2.4e-07 61.6 158 26.6
Gorai.003G070500 Gossypium raimondii HOM05D001961 ORTHO05D002286 2.4e-07 61.6 103 29.1
Prupe.5G184600 Prunus persica HOM05D001961 ORTHO05D002286 2.4e-07 61.6 103 30.1
Nn4g23006 Nelumbo nucifera HOM05D001961 ORTHO05D002286 3.1e-07 61.2 103 32.0
CARHR156620 Cardamine hirsuta HOM05D001961 ORTHO05D002286 4.1e-07 60.8 98 33.7
Dinv19903 Davidia involucrata HOM05D001961 ORTHO05D002286 4.1e-07 60.8 103 29.1
Gohir.D03G090700 Gossypium hirsutum HOM05D001961 ORTHO05D002286 5.3e-07 60.5 103 29.1
Nitab4.5_0000909g0070 Nicotiana tabacum HOM05D001961 ORTHO05D002286 5.3e-07 60.5 99 31.3
Atru.chr9.2337 Acer truncatum HOM05D001961 ORTHO05D002286 7.0e-07 60.1 98 30.6
Thhalv10010059m.g Eutrema salsugineum HOM05D001961 ORTHO05D002286 7.0e-07 60.1 103 30.1
Gohir.D11G032100 Gossypium hirsutum HOM05D001961 ORTHO05D002286 7.0e-07 60.1 103 29.1
Gorai.007G034900 Gossypium raimondii HOM05D001961 ORTHO05D002286 7.0e-07 60.1 103 29.1
Sp5g14040 Schrenkiella parvula HOM05D001961 ORTHO05D002286 7.0e-07 60.1 103 32.0
PGSC0003DMG400033067 Solanum tuberosum HOM05D001961 ORTHO05D002286 7.0e-07 60.1 149 25.5
A06p19750 Brassica napus HOM05D001961 ORTHO05D002286 9.1e-07 59.7 103 30.1
BraA06t25050Z Brassica rapa HOM05D001961 ORTHO05D002286 9.1e-07 59.7 103 30.1
BraA06t25054Z Brassica rapa HOM05D001961 ORTHO05D002286 9.1e-07 59.7 103 30.1
CSS0014551 Camellia sinensis var. sinensis HOM05D001961 ORTHO05D002286 9.1e-07 59.7 103 27.2
MBI01_g01232_MAGBIO Magnolia biondii HOM05D001961 ORTHO05D002286 9.1e-07 59.7 98 33.7
MSTRG.11404 Avicennia marina HOM05D001961 ORTHO05D002286 1.2e-06 59.3 98 28.6
Ciclev10018472m.g Citrus clementina HOM05D001961 ORTHO05D002286 1.2e-06 59.3 98 31.6
MD06G1185800 Malus domestica HOM05D001961 ORTHO05D002286 1.2e-06 59.3 98 31.6
Actinidia36031 Actinidia chinensis HOM05D001961 ORTHO05D002286 1.6e-06 58.9 106 29.2
BcaC01g01759 Brassica carinata HOM05D001961 ORTHO05D002286 1.6e-06 58.9 103 31.1
BcaC01g01766 Brassica carinata HOM05D001961 ORTHO05D002286 1.6e-06 58.9 103 31.1
C03p72190 Brassica napus HOM05D001961 ORTHO05D002286 1.6e-06 58.9 103 31.1
BolC3t19515H Brassica oleracea HOM05D001961 ORTHO05D002286 1.6e-06 58.9 103 31.1
CDE07G1845 Ceratophyllum demersum HOM05D001961 ORTHO05D002286 1.6e-06 58.9 424 21.9
Duzib068G1318 Durio zibethinus HOM05D001961 ORTHO05D002286 1.6e-06 58.9 103 29.1
Nitab4.5_0007282g0070 Nicotiana tabacum HOM05D001961 ORTHO05D002286 1.6e-06 58.9 98 32.7
Peaxi162Scf00689g00564 Petunia axillaris HOM05D001961 ORTHO05D002286 1.6e-06 58.9 98 32.7
CAN.G628.49 Capsicum annuum HOM05D001961 ORTHO05D002286 2.0e-06 58.5 99 31.3
Manes.14G073702 Manihot esculenta HOM05D001961 ORTHO05D002286 2.0e-06 58.5 103 28.2
PSO210G7105 Papaver somniferum HOM05D001961 ORTHO05D002286 2.0e-06 58.5 145 26.2
Thecc.03G077100 Theobroma cacao HOM05D001961 ORTHO05D002286 2.0e-06 58.5 103 29.1
Actinidia37665 Actinidia chinensis HOM05D001961 ORTHO05D002286 2.6e-06 58.2 98 26.5
TWI60G1556 Tripterygium wilfordii HOM05D001961 ORTHO05D002286 2.6e-06 58.2 103 30.1
AL5G27220 Arabidopsis lyrata HOM05D001961 ORTHO05D002286 3.5e-06 57.8 98 30.6
MD14G1192000 Malus domestica HOM05D001961 ORTHO05D002286 3.5e-06 57.8 98 29.6
Sp5g14050 Schrenkiella parvula HOM05D001961 ORTHO05D002286 3.5e-06 57.8 104 30.8
Nitab4.5_0000003g0050 Nicotiana tabacum HOM05D001961 ORTHO05D002286 4.5e-06 57.4 98 30.6
Solyc06g071120.3 Solanum lycopersicum HOM05D001961 ORTHO05D002286 4.5e-06 57.4 98 30.6
Sopen06g027420 Solanum pennellii HOM05D001961 ORTHO05D002286 4.5e-06 57.4 98 30.6
Actinidia34975 Actinidia chinensis HOM05D001961 ORTHO05D002286 5.9e-06 57.0 103 26.2
AT3G47890 Arabidopsis thaliana HOM05D001961 ORTHO05D002286 5.9e-06 57.0 98 30.6
PSO161G0075 Papaver somniferum HOM05D001961 ORTHO05D002286 5.9e-06 57.0 115 28.7
Hund09373 Selenicereus undatus HOM05D001961 ORTHO05D002286 5.9e-06 57.0 101 26.7
Solyc03g113370.3 Solanum lycopersicum HOM05D001961 ORTHO05D002286 5.9e-06 57.0 98 31.6
Cfa019014 Carpinus fangiana HOM05D001961 ORTHO05D002286 7.7e-06 56.6 103 30.1
MBI04_g20667_MAGBIO Magnolia biondii HOM05D001961 ORTHO05D002286 7.7e-06 56.6 137 27.0


User provided reference genes

Program Settings