Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0597601 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 1.5e-99 366.7 259 100.0
Os11g0597500 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 8.2e-34 148.3 184 47.3
Os11g0592900 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 1.1e-17 94.7 63 76.2
Zm00001eb167650 Zea mays HOM05D006792 ORTHO05D008489 3.8e-15 86.3 63 69.8
AUR62016018 Chenopodium quinoa HOM05D006792 ORTHO05D008489 1.4e-09 67.8 68 51.5
AUR62021223 Chenopodium quinoa HOM05D006792 ORTHO05D008489 1.4e-09 67.8 68 51.5
unitig_8.g5015 Utricularia gibba HOM05D006792 ORTHO05D008489 1.4e-09 67.8 66 53.0
MSTRG.1327 Avicennia marina HOM05D006792 ORTHO05D008489 2.4e-09 67.0 68 51.5
Migut.C00611 Erythranthe guttata HOM05D006792 ORTHO05D008489 4.1e-09 66.2 98 42.9
HPP92_009608 Vanilla planifolia HOM05D006792 ORTHO05D008489 4.1e-09 66.2 63 52.4
EL10Ac3g05711 Beta vulgaris HOM05D006792 ORTHO05D008489 5.4e-09 65.9 68 50.0
CAN.G1110.13 Capsicum annuum HOM05D006792 ORTHO05D008489 7.0e-09 65.5 68 50.0
Lj4A777T61 Lonicera japonica HOM05D006792 ORTHO05D008489 7.0e-09 65.5 63 50.8
unitig_19.g30007 Utricularia gibba HOM05D006792 ORTHO05D008489 7.0e-09 65.5 65 52.3
CSS0036769 Camellia sinensis var. sinensis HOM05D006792 ORTHO05D008489 9.2e-09 65.1 68 48.5
Cc10_g03850 Coffea canephora HOM05D006792 ORTHO05D008489 9.2e-09 65.1 63 49.2
Dinv35992 Davidia involucrata HOM05D006792 ORTHO05D008489 9.2e-09 65.1 68 48.5
Sc02g0006830 Simmondsia chinensis HOM05D006792 ORTHO05D008489 9.2e-09 65.1 68 50.0
CSS0036679 Camellia sinensis var. sinensis HOM05D006792 ORTHO05D008489 1.2e-08 64.7 68 48.5
ATR0225G026 Amborella trichopoda HOM05D006792 ORTHO05D008489 1.6e-08 64.3 54 53.7
Peaxi162Scf00324g00610 Petunia axillaris HOM05D006792 ORTHO05D008489 1.6e-08 64.3 64 50.0
Cpa.g.sc376.3 Carica papaya HOM05D006792 ORTHO05D008489 2.0e-08 63.9 68 48.5
Nitab4.5_0009129g0010 Nicotiana tabacum HOM05D006792 ORTHO05D008489 3.5e-08 63.2 68 47.1
Oeu040900.1 Olea europaea HOM05D006792 ORTHO05D008489 3.5e-08 63.2 68 47.1
Potri.014G035300 Populus trichocarpa HOM05D006792 ORTHO05D008489 3.5e-08 63.2 68 48.5
Sed0017537 Sechium edule HOM05D006792 ORTHO05D008489 3.5e-08 63.2 68 48.5
SGA_v2.0_scaffold217G42431 Striga asiatica HOM05D006792 ORTHO05D008489 3.5e-08 63.2 68 48.5
ClCG08G015590 Citrullus lanatus HOM05D006792 ORTHO05D008489 4.5e-08 62.8 68 47.1
Lj5g0003340 Lotus japonicus HOM05D006792 ORTHO05D008489 4.5e-08 62.8 64 51.6
Medtr1g075100 Medicago truncatula HOM05D006792 ORTHO05D008489 4.5e-08 62.8 64 50.0
Nitab4.5_0000074g0180 Nicotiana tabacum HOM05D006792 ORTHO05D008489 4.5e-08 62.8 68 47.1
TAR625G1025 Trochodendron aralioides HOM05D006792 ORTHO05D008489 4.5e-08 62.8 54 53.7
Ah.07g209080 Amaranthus hybridus HOM05D006792 ORTHO05D008489 5.9e-08 62.4 68 45.6
Sabra14G0025200 Salix brachista HOM05D006792 ORTHO05D008489 5.9e-08 62.4 68 48.5
SalBow1G1949 Salvia bowleyana HOM05D006792 ORTHO05D008489 5.9e-08 62.4 93 41.9
SalBow6G5080 Salvia bowleyana HOM05D006792 ORTHO05D008489 5.9e-08 62.4 93 41.9
arahy.Tifrunner.gnm1.ann1.LP5K48 Arachis hypogaea HOM05D006792 ORTHO05D008489 7.8e-08 62.0 64 48.4
CiPaw.15G064100 Carya illinoinensis HOM05D006792 ORTHO05D008489 7.8e-08 62.0 68 47.1
COL.COLO4_26447 Corchorus olitorius HOM05D006792 ORTHO05D008489 7.8e-08 62.0 68 47.1
PGSC0003DMG400014433 Solanum tuberosum HOM05D006792 ORTHO05D008489 7.8e-08 62.0 68 47.1
vmacro21565 Vaccinium macrocarpon HOM05D006792 ORTHO05D008489 7.8e-08 62.0 54 50.0
Manes.10G083100 Manihot esculenta HOM05D006792 ORTHO05D008489 1.0e-07 61.6 63 50.8
SGA_v2.0_scaffold127G34009 Striga asiatica HOM05D006792 ORTHO05D008489 1.0e-07 61.6 68 47.1
TAR381G0050 Trochodendron aralioides HOM05D006792 ORTHO05D008489 1.0e-07 61.6 68 48.5
Aqoxy5G01393 Aquilegia oxysepala HOM05D006792 ORTHO05D008489 1.3e-07 61.2 54 51.9
arahy.Tifrunner.gnm1.ann1.LDJ6K5 Arachis hypogaea HOM05D006792 ORTHO05D008489 1.3e-07 61.2 64 48.4
Ca_09830_v3 Cicer arietinum L. HOM05D002720 ORTHO05D002901 1.3e-07 61.2 64 48.4
Solyc10g006520.3 Solanum lycopersicum HOM05D006792 ORTHO05D008489 1.3e-07 61.2 68 47.1
Sopen10g002470 Solanum pennellii HOM05D006792 ORTHO05D008489 1.3e-07 61.2 68 47.1
Thecc.08G014600 Theobroma cacao HOM05D006792 ORTHO05D008489 1.3e-07 61.2 68 47.1
CANSAT56G4245 Cannabis sativa HOM05D006792 ORTHO05D008489 1.7e-07 60.8 68 47.1
Lsat_1_v5_gn_4_124401 Lactuca sativa HOM05D006792 ORTHO05D008489 1.7e-07 60.8 63 47.6
Hund23634 Selenicereus undatus HOM05D006792 ORTHO05D008489 1.7e-07 60.8 71 45.1
MELO3C010894.2 Cucumis melo HOM05D006792 ORTHO05D008489 2.3e-07 60.5 68 45.6
ECA232G0465 Erigeron canadensis HOM05D006792 ORTHO05D008489 2.3e-07 60.5 63 47.6
Gohir.A06G015700 Gossypium hirsutum HOM05D006792 ORTHO05D008489 2.3e-07 60.5 68 45.6
Lalb_Chr06g0172721 Lupinus albus HOM05D006792 ORTHO05D008489 2.3e-07 60.5 68 45.6
Rhsim06G0045800 Rhododendron simsii HOM05D006792 ORTHO05D008489 2.3e-07 60.5 54 50.0
RcHm_v2.0_Chr6g0299831 Rosa chinensis HOM05D006792 ORTHO05D008489 2.3e-07 60.5 68 47.1
GSVIVG01009569001 Vitis vinifera HOM05D006792 ORTHO05D008489 2.3e-07 60.5 68 47.1
Aa31LG5G9340 Aethionema arabicum HOM05D006792 ORTHO05D008489 2.9e-07 60.1 63 49.2
BcaC06g32576 Brassica carinata HOM05D006792 ORTHO05D008489 2.9e-07 60.1 63 49.2
CDE04G1657 Ceratophyllum demersum HOM05D006792 ORTHO05D008489 2.9e-07 60.1 54 51.9
CDE07G1453 Ceratophyllum demersum HOM05D006792 ORTHO05D008489 2.9e-07 60.1 54 51.9
Haze_17574 Corylus avellana HOM05D006792 ORTHO05D008489 2.9e-07 60.1 68 45.6
CsaV3_2G028180 Cucumis sativus L. HOM05D006792 ORTHO05D008489 2.9e-07 60.1 68 44.1
FvH4_2g40760 Fragaria vesca HOM05D006792 ORTHO05D008489 2.9e-07 60.1 68 47.1
FAN15G1697 Fragaria x ananassa HOM05D006792 ORTHO05D008489 2.9e-07 60.1 68 47.1
FAN27G1218 Fragaria x ananassa HOM05D006792 ORTHO05D008489 2.9e-07 60.1 68 47.1
PSO170G4587 Papaver somniferum HOM05D006792 ORTHO05D008489 2.9e-07 60.1 68 45.6
PGR031G1503 Punica granatum HOM05D006792 ORTHO05D008489 2.9e-07 60.1 71 46.5
PGR031G1590 Punica granatum HOM05D006792 ORTHO05D008489 2.9e-07 60.1 71 46.5
TWI36G0635 Tripterygium wilfordii HOM05D006792 ORTHO05D008489 2.9e-07 60.1 68 45.6
BcaC06g32375 Brassica carinata HOM05D006792 ORTHO05D008489 3.9e-07 59.7 63 49.2
A10p29960 Brassica napus HOM05D006792 ORTHO05D008489 3.9e-07 59.7 63 49.2
C09p70370 Brassica napus HOM05D006792 ORTHO05D008489 3.9e-07 59.7 63 49.2
BolC9t59782H Brassica oleracea HOM05D006792 ORTHO05D008489 3.9e-07 59.7 63 49.2
Duzib041G0477 Durio zibethinus HOM05D006792 ORTHO05D008489 3.9e-07 59.7 68 45.6
Nn5g30170 Nelumbo nucifera HOM05D006792 ORTHO05D008489 3.9e-07 59.7 68 45.6
Psat6g128400 Pisum sativum HOM05D006792 ORTHO05D008489 5.0e-07 59.3 64 48.4
QL02p006151 Quercus lobata HOM05D006792 ORTHO05D008489 5.0e-07 59.3 68 47.1
BraA10t45035Z Brassica rapa HOM05D006792 ORTHO05D008489 6.6e-07 58.9 63 49.2
CARHR285910 Cardamine hirsuta HOM05D006792 ORTHO05D008489 6.6e-07 58.9 63 49.2
Glyma.20G204600 Glycine max HOM05D006792 ORTHO05D008489 6.6e-07 58.9 64 46.9
Sp6g36430 Schrenkiella parvula HOM05D006792 ORTHO05D008489 8.6e-07 58.5 54 50.0
THA.LOC104803789 Tarenaya hassleriana HOM05D006792 ORTHO05D008489 8.6e-07 58.5 63 47.6
Cfa018502 Carpinus fangiana HOM05D006792 ORTHO05D008489 1.1e-06 58.2 68 45.6
Eucgr.L00645 Eucalyptus grandis HOM05D006792 ORTHO05D008489 1.1e-06 58.2 63 47.6
Phvul.L001959 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 1.1e-06 58.2 64 46.9
Prupe.1G390300 Prunus persica HOM05D006792 ORTHO05D008489 1.1e-06 58.2 68 45.6
Carub.0006s0531 Capsella rubella HOM05D006792 ORTHO05D008489 1.5e-06 57.8 63 47.6
Carub.0006s0578 Capsella rubella HOM05D006792 ORTHO05D008489 1.5e-06 57.8 63 47.6
Ciclev10002498m.g Citrus clementina HOM05D006792 ORTHO05D008489 1.5e-06 57.8 68 44.1
Glyma.09G029200 Glycine max HOM05D006792 ORTHO05D008489 1.5e-06 57.8 54 50.0
Actinidia15267 Actinidia chinensis HOM05D006792 ORTHO05D008489 1.9e-06 57.4 71 43.7
HanXRQChr09g0268121 Helianthus annuus HOM05D006792 ORTHO05D008489 1.9e-06 57.4 63 44.4
MD15G1036100 Malus domestica HOM05D006792 ORTHO05D008489 1.9e-06 57.4 68 44.1
TPR.G28895 Trifolium pratense HOM05D006792 ORTHO05D008489 1.9e-06 57.4 64 48.4
VMungo0720G1195 Vigna mungo HOM05D006792 ORTHO05D008489 1.9e-06 57.4 66 45.5
DCAR_008785 Daucus carota HOM05D006792 ORTHO05D008489 2.5e-06 57.0 64 48.4
Thhalv10014748m.g Eutrema salsugineum HOM05D006792 ORTHO05D008489 3.3e-06 56.6 63 47.6
Duzib093G1402 Durio zibethinus HOM05D006792 ORTHO05D008489 4.3e-06 56.2 68 42.6
Atru.chr13.615 Acer truncatum HOM05D006792 ORTHO05D008489 5.6e-06 55.8 68 44.1
AL6G16520 Arabidopsis lyrata HOM05D006792 ORTHO05D008489 5.6e-06 55.8 54 46.3
AL6G16990 Arabidopsis lyrata HOM05D006792 ORTHO05D008489 7.3e-06 55.5 54 46.3
Gohir.D06G013900 Gossypium hirsutum HOM05D006792 ORTHO05D008489 7.3e-06 55.5 68 42.6
Gorai.010G016600 Gossypium raimondii HOM05D006792 ORTHO05D008489 7.3e-06 55.5 68 42.6
Rhsim06G0045400 Rhododendron simsii HOM05D000500 ORTHO05D000367 9.5e-06 55.1 52 46.2


User provided reference genes

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