Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0597500 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 8.0e-163 577.0 288 100.0
Os11g0592900 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 2.8e-35 153.3 151 57.0
Zm00001eb167650 Zea mays HOM05D006792 ORTHO05D008489 2.4e-34 150.2 143 57.3
Os11g0597601 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 1.2e-33 147.9 184 47.3
HPP92_009608 Vanilla planifolia HOM05D006792 ORTHO05D008489 4.1e-18 96.3 140 40.0
BcaC06g32576 Brassica carinata HOM05D006792 ORTHO05D008489 1.5e-15 87.8 129 39.5
SGA_v2.0_scaffold217G42431 Striga asiatica HOM05D006792 ORTHO05D008489 1.9e-15 87.4 146 39.7
ECA232G0465 Erigeron canadensis HOM05D006792 ORTHO05D008489 3.3e-15 86.7 130 39.2
Lj4A777T61 Lonicera japonica HOM05D006792 ORTHO05D008489 5.6e-15 85.9 146 37.7
A10p29960 Brassica napus HOM05D006792 ORTHO05D008489 7.3e-15 85.5 136 39.7
BraA10t45035Z Brassica rapa HOM05D006792 ORTHO05D008489 1.2e-14 84.7 136 39.7
Glyma.20G204600 Glycine max HOM05D006792 ORTHO05D008489 1.2e-14 84.7 146 40.4
MSTRG.1327 Avicennia marina HOM05D006792 ORTHO05D008489 2.1e-14 84.0 141 39.0
BcaC06g32375 Brassica carinata HOM05D006792 ORTHO05D008489 3.6e-14 83.2 134 38.8
C09p70370 Brassica napus HOM05D006792 ORTHO05D008489 3.6e-14 83.2 134 38.8
BolC9t59782H Brassica oleracea HOM05D006792 ORTHO05D008489 4.7e-14 82.8 134 38.8
Sp6g36430 Schrenkiella parvula HOM05D006792 ORTHO05D008489 4.7e-14 82.8 137 38.7
SalBow1G1949 Salvia bowleyana HOM05D006792 ORTHO05D008489 6.2e-14 82.4 137 41.6
SalBow6G5080 Salvia bowleyana HOM05D006792 ORTHO05D008489 6.2e-14 82.4 137 41.6
Carub.0006s0578 Capsella rubella HOM05D006792 ORTHO05D008489 1.8e-13 80.9 135 37.8
Lj5g0003340 Lotus japonicus HOM05D006792 ORTHO05D008489 1.8e-13 80.9 181 33.1
Sc02g0006830 Simmondsia chinensis HOM05D006792 ORTHO05D008489 1.8e-13 80.9 153 35.9
Carub.0006s0531 Capsella rubella HOM05D006792 ORTHO05D008489 3.1e-13 80.1 135 37.0
Peaxi162Scf00324g00610 Petunia axillaris HOM05D006792 ORTHO05D008489 3.1e-13 80.1 152 35.5
Thhalv10014748m.g Eutrema salsugineum HOM05D006792 ORTHO05D008489 4.0e-13 79.7 136 38.2
Medtr1g075100 Medicago truncatula HOM05D006792 ORTHO05D008489 4.0e-13 79.7 169 33.7
Eucgr.E03397 Eucalyptus grandis HOM05D006792 ORTHO05D008489 5.2e-13 79.3 127 38.6
arahy.Tifrunner.gnm1.ann1.LP5K48 Arachis hypogaea HOM05D006792 ORTHO05D008489 6.8e-13 79.0 145 35.2
CSS0036769 Camellia sinensis var. sinensis HOM05D006792 ORTHO05D008489 6.8e-13 79.0 159 34.6
AL6G16520 Arabidopsis lyrata HOM05D006792 ORTHO05D008489 8.9e-13 78.6 134 35.8
CSS0036679 Camellia sinensis var. sinensis HOM05D006792 ORTHO05D008489 8.9e-13 78.6 159 34.6
Cpa.g.sc376.3 Carica papaya HOM05D006792 ORTHO05D008489 8.9e-13 78.6 153 35.9
DCAR_008785 Daucus carota HOM05D006792 ORTHO05D008489 8.9e-13 78.6 145 36.6
AL6G16990 Arabidopsis lyrata HOM05D006792 ORTHO05D008489 1.2e-12 78.2 134 35.8
Dinv35992 Davidia involucrata HOM05D006792 ORTHO05D008489 1.2e-12 78.2 151 35.8
Oeu040900.1 Olea europaea HOM05D006792 ORTHO05D008489 1.2e-12 78.2 140 37.1
Aa31LG5G9340 Aethionema arabicum HOM05D006792 ORTHO05D008489 1.5e-12 77.8 188 33.0
arahy.Tifrunner.gnm1.ann1.LDJ6K5 Arachis hypogaea HOM05D006792 ORTHO05D008489 1.5e-12 77.8 148 34.5
EL10Ac3g05711 Beta vulgaris HOM05D006792 ORTHO05D008489 1.5e-12 77.8 170 32.4
GSVIVG01009569001 Vitis vinifera HOM05D006792 ORTHO05D008489 1.5e-12 77.8 136 39.0
ClCG08G015590 Citrullus lanatus HOM05D006792 ORTHO05D008489 2.0e-12 77.4 150 38.7
AT5G06430 Arabidopsis thaliana HOM05D006792 ORTHO05D008489 2.6e-12 77.0 135 36.3
Migut.C00611 Erythranthe guttata HOM05D006792 ORTHO05D008489 2.6e-12 77.0 142 35.9
Eucgr.L00645 Eucalyptus grandis HOM05D006792 ORTHO05D008489 2.6e-12 77.0 153 37.3
CsaV3_2G028180 Cucumis sativus L. HOM05D006792 ORTHO05D008489 3.4e-12 76.6 149 36.2
Nitab4.5_0000074g0180 Nicotiana tabacum HOM05D006792 ORTHO05D008489 3.4e-12 76.6 145 34.5
Phvul.L001959 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 3.4e-12 76.6 141 36.2
Potri.014G035300 Populus trichocarpa HOM05D006792 ORTHO05D008489 3.4e-12 76.6 154 33.8
SGA_v2.0_scaffold127G34009 Striga asiatica HOM05D006792 ORTHO05D008489 3.4e-12 76.6 146 37.0
vmacro21565 Vaccinium macrocarpon HOM05D006792 ORTHO05D008489 3.4e-12 76.6 155 32.3
Sed0017537 Sechium edule HOM05D006792 ORTHO05D008489 4.4e-12 76.3 156 35.3
unitig_19.g30007 Utricularia gibba HOM05D006792 ORTHO05D008489 4.4e-12 76.3 141 36.2
Rhsim06G0045800 Rhododendron simsii HOM05D006792 ORTHO05D008489 5.8e-12 75.9 155 32.9
VMungo0720G1195 Vigna mungo HOM05D006792 ORTHO05D008489 5.8e-12 75.9 131 38.9
Actinidia15267 Actinidia chinensis HOM05D006792 ORTHO05D008489 7.5e-12 75.5 142 35.2
MELO3C010894.2 Cucumis melo HOM05D006792 ORTHO05D008489 7.5e-12 75.5 149 35.6
PGR031G1590 Punica granatum HOM05D006792 ORTHO05D008489 7.5e-12 75.5 145 36.6
CARHR285910 Cardamine hirsuta HOM05D006792 ORTHO05D008489 9.8e-12 75.1 102 41.2
Nitab4.5_0009129g0010 Nicotiana tabacum HOM05D006792 ORTHO05D008489 9.8e-12 75.1 145 33.8
TWI36G0635 Tripterygium wilfordii HOM05D006792 ORTHO05D008489 9.8e-12 75.1 153 34.0
TAR625G1025 Trochodendron aralioides HOM05D006792 ORTHO05D008489 9.8e-12 75.1 177 31.1
CAN.G1110.13 Capsicum annuum HOM05D006792 ORTHO05D008489 1.3e-11 74.7 146 33.6
FAN15G1697 Fragaria x ananassa HOM05D006792 ORTHO05D008489 1.7e-11 74.3 151 35.8
HanXRQChr09g0268121 Helianthus annuus HOM05D006792 ORTHO05D008489 1.7e-11 74.3 135 34.1
unitig_8.g5015 Utricularia gibba HOM05D006792 ORTHO05D008489 1.7e-11 74.3 140 35.7
MD15G1036100 Malus domestica HOM05D006792 ORTHO05D008489 2.2e-11 73.9 149 31.5
Lalb_Chr06g0172721 Lupinus albus HOM05D006792 ORTHO05D008489 2.9e-11 73.6 160 33.8
Manes.10G083100 Manihot esculenta HOM05D006792 ORTHO05D008489 2.9e-11 73.6 157 35.7
Prupe.1G390300 Prunus persica HOM05D006792 ORTHO05D008489 2.9e-11 73.6 154 33.8
Cfa018502 Carpinus fangiana HOM05D006792 ORTHO05D008489 3.7e-11 73.2 149 34.9
Haze_17574 Corylus avellana HOM05D006792 ORTHO05D008489 4.9e-11 72.8 153 34.6
FvH4_2g40760 Fragaria vesca HOM05D006792 ORTHO05D008489 4.9e-11 72.8 154 35.1
Gohir.A06G015700 Gossypium hirsutum HOM05D006792 ORTHO05D008489 4.9e-11 72.8 149 33.6
Lsat_1_v5_gn_4_124401 Lactuca sativa HOM05D006792 ORTHO05D008489 4.9e-11 72.8 145 34.5
FAN27G1218 Fragaria x ananassa HOM05D006792 ORTHO05D008489 6.4e-11 72.4 143 35.0
Nn5g30170 Nelumbo nucifera HOM05D006792 ORTHO05D008489 6.4e-11 72.4 158 32.3
RcHm_v2.0_Chr6g0299831 Rosa chinensis HOM05D006792 ORTHO05D008489 6.4e-11 72.4 148 34.5
Hund23634 Selenicereus undatus HOM05D006792 ORTHO05D008489 6.4e-11 72.4 166 31.9
Thecc.08G014600 Theobroma cacao HOM05D006792 ORTHO05D008489 6.4e-11 72.4 148 34.5
Aqoxy5G01393 Aquilegia oxysepala HOM05D006792 ORTHO05D008489 8.3e-11 72.0 161 31.7
AUR62016018 Chenopodium quinoa HOM05D006792 ORTHO05D008489 8.3e-11 72.0 64 56.2
AUR62021223 Chenopodium quinoa HOM05D006792 ORTHO05D008489 8.3e-11 72.0 64 56.2
Duzib041G0477 Durio zibethinus HOM05D006792 ORTHO05D008489 8.3e-11 72.0 149 32.9
Gorai.010G016600 Gossypium raimondii HOM05D006792 ORTHO05D008489 8.3e-11 72.0 147 33.3
Psat6g128400 Pisum sativum HOM05D006792 ORTHO05D008489 8.3e-11 72.0 175 30.9
Ciclev10002498m.g Citrus clementina HOM05D006792 ORTHO05D008489 1.1e-10 71.6 148 32.4
CiPaw.15G064100 Carya illinoinensis HOM05D006792 ORTHO05D008489 1.4e-10 71.2 154 35.1
PSO170G4587 Papaver somniferum HOM05D006792 ORTHO05D008489 1.4e-10 71.2 155 34.2
TPR.G28895 Trifolium pratense HOM05D006792 ORTHO05D008489 1.4e-10 71.2 174 32.2
Ah.07g209080 Amaranthus hybridus HOM05D006792 ORTHO05D008489 2.4e-10 70.5 155 31.6
Cc10_g03850 Coffea canephora HOM05D006792 ORTHO05D008489 2.4e-10 70.5 64 51.6
PGR031G1503 Punica granatum HOM05D006792 ORTHO05D008489 3.2e-10 70.1 138 36.2
THA.LOC104803789 Tarenaya hassleriana HOM05D006792 ORTHO05D008489 3.2e-10 70.1 151 32.5
QL02p006151 Quercus lobata HOM05D006792 ORTHO05D008489 4.1e-10 69.7 154 33.1
Solyc10g006520.3 Solanum lycopersicum HOM05D006792 ORTHO05D008489 4.1e-10 69.7 146 32.9
Sopen10g002470 Solanum pennellii HOM05D006792 ORTHO05D008489 4.1e-10 69.7 146 32.9
PGSC0003DMG400014433 Solanum tuberosum HOM05D006792 ORTHO05D008489 4.1e-10 69.7 149 32.2
TAR381G0050 Trochodendron aralioides HOM05D006792 ORTHO05D008489 5.4e-10 69.3 150 35.3
ATR0225G026 Amborella trichopoda HOM05D006792 ORTHO05D008489 7.1e-10 68.9 64 53.1
CDE07G1453 Ceratophyllum demersum HOM05D006792 ORTHO05D008489 7.1e-10 68.9 141 32.6
Gohir.D06G013900 Gossypium hirsutum HOM05D006792 ORTHO05D008489 7.1e-10 68.9 149 32.9
CDE04G1657 Ceratophyllum demersum HOM05D006792 ORTHO05D008489 9.2e-10 68.6 141 31.9
COL.COLO4_26447 Corchorus olitorius HOM05D006792 ORTHO05D008489 1.2e-09 68.2 64 53.1
CANSAT56G4245 Cannabis sativa HOM05D006792 ORTHO05D008489 1.6e-09 67.8 92 38.0
Ca_09830_v3 Cicer arietinum L. HOM05D002720 ORTHO05D002901 1.6e-09 67.8 75 46.7
Atru.chr13.615 Acer truncatum HOM05D006792 ORTHO05D008489 2.7e-09 67.0 142 33.1
Sabra14G0025200 Salix brachista HOM05D006792 ORTHO05D008489 2.7e-09 67.0 64 51.6
Glyma.09G029200 Glycine max HOM05D006792 ORTHO05D008489 1.3e-08 64.7 66 47.0
Duzib093G1402 Durio zibethinus HOM05D006792 ORTHO05D008489 2.5e-07 60.5 63 47.6
SMO184G0001 Selaginella moellendorffii HOM05D006792 ORTHO05D008489 3.3e-07 60.1 64 48.4
CARHR206180 Cardamine hirsuta HOM05D006792 ORTHO05D008489 2.8e-06 57.0 105 37.1
Pp3c14_7090 Physcomitrium patens HOM05D006792 ORTHO05D008489 6.2e-06 55.8 63 46.0
Rhsim06G0045400 Rhododendron simsii HOM05D000500 ORTHO05D000367 8.1e-06 55.5 52 46.2


User provided reference genes

Program Settings