Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0595100 Oryza sativa ssp. japonica HOM05D011330 ORTHO05D013903 9.7e-247 856.3 409 100.0
Os11g0594600 Oryza sativa ssp. japonica HOM05D011330 ORTHO05D013903 1.3e-81 307.8 414 42.3
Zm00001eb167580 Zea mays HOM05D011330 ORTHO05D013903 3.2e-80 303.1 416 43.8
Os04g0329500 Oryza sativa ssp. japonica HOM05D011330 ORTHO05D013903 3.3e-69 266.5 392 41.3
Os04g0317300 Oryza sativa ssp. japonica HOM05D011330 ORTHO05D013903 5.6e-69 265.8 414 40.1
Os04g0316800 Oryza sativa ssp. japonica HOM05D011330 ORTHO05D013903 7.3e-61 238.8 414 40.1
Os11g0594500 Oryza sativa ssp. japonica HOM05D011330 ORTHO05D013903 3.5e-47 193.4 427 33.5
Zm00001eb114820 Zea mays HOM05D011330 ORTHO05D013903 8.7e-46 188.7 360 37.5
Os08g0293200 Oryza sativa ssp. japonica HOM05D011330 ORTHO05D013903 6.2e-36 156.0 219 43.8
Os06g0148600 Oryza sativa ssp. japonica HOM05D011330 ORTHO05D000074 9.0e-19 99.0 435 25.7
TAR636G0219 Trochodendron aralioides HOM05D000151 ORTHO05D000074 4.2e-16 90.1 388 25.3
Os01g0673300 Oryza sativa ssp. japonica HOM05D010462 ORTHO05D012694 1.2e-15 88.6 366 26.8
TAR636G2580 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.2e-15 88.6 368 25.3
Os02g0159800 Oryza sativa ssp. japonica HOM05D023903 ORTHO05D030342 3.9e-14 83.6 302 28.8
Aqoxy7G03473 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 5.1e-14 83.2 432 24.8
Os06g0148700 Oryza sativa ssp. japonica HOM05D011330 ORTHO05D013903 7.4e-13 79.3 352 23.3
Os12g0585300 Oryza sativa ssp. japonica HOM05D011330 ORTHO05D013903 1.7e-12 78.2 441 26.5
TPR.G25164 Trifolium pratense HOM05D010147 ORTHO05D006739 1.8e-11 74.7 393 23.9
Actinidia15471 Actinidia chinensis HOM05D000151 ORTHO05D000074 2.4e-11 74.3 401 25.4
RcHm_v2.0_Chr4g0393001 Rosa chinensis HOM05D007346 ORTHO05D009044 2.0e-10 71.2 227 28.2
Potri.009G140000 Populus trichocarpa HOM05D000151 ORTHO05D000074 4.5e-10 70.1 382 22.0
Glyma.04G019900 Glycine max HOM05D000151 ORTHO05D000074 5.9e-10 69.7 397 23.9
TAR628G0991 Trochodendron aralioides HOM05D000151 ORTHO05D000074 5.9e-10 69.7 431 22.5
Sopen02g036600 Solanum pennellii HOM05D000151 ORTHO05D000074 3.8e-09 67.0 393 22.6
TAR525G0003 Trochodendron aralioides HOM05D000151 ORTHO05D000074 3.8e-09 67.0 419 22.9
EL10Ac9g22285 Beta vulgaris HOM05D000151 ORTHO05D000074 5.0e-09 66.6 404 20.5
DCAR_023003 Daucus carota HOM05D000151 ORTHO05D000074 6.5e-09 66.2 403 24.6
MBI17_g17509_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 6.5e-09 66.2 340 25.3
Os07g0499900 Oryza sativa ssp. japonica HOM05D033386 ORTHO05D037243 1.1e-08 65.5 227 28.2
Aqoxy5G01582 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 1.4e-08 65.1 327 25.1
Sabra09G0108800 Salix brachista HOM05D000151 ORTHO05D000074 3.2e-08 63.9 368 22.0
Aqoxy4G01250 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 5.5e-08 63.2 373 25.2
Rhsim02G0229800 Rhododendron simsii HOM05D000151 ORTHO05D000074 7.2e-08 62.8 384 21.1
Solyc08g082510.1 Solanum lycopersicum HOM05D000151 ORTHO05D000074 7.2e-08 62.8 378 24.3
AUR62024241 Chenopodium quinoa HOM05D000151 ORTHO05D000074 1.2e-07 62.0 357 22.7
QL11p053208 Quercus lobata HOM05D000151 ORTHO05D000074 1.6e-07 61.6 391 21.5
Sopen03g032220 Solanum pennellii HOM05D000151 ORTHO05D000074 2.1e-07 61.2 415 24.3
Lalb_Chr09g0321401 Lupinus albus HOM05D000151 ORTHO05D000074 4.7e-07 60.1 400 21.8
Gorai.002G201800 Gossypium raimondii HOM05D000151 ORTHO05D000074 6.1e-07 59.7 403 21.3
Cc08_g06170 Coffea canephora HOM05D000151 ORTHO05D000074 7.9e-07 59.3 292 26.0
Os04g0329650 Oryza sativa ssp. japonica HOM05D011330 ORTHO05D013903 7.9e-07 59.3 77 40.3
Migut.B00040 Erythranthe guttata HOM05D000151 ORTHO05D000074 1.0e-06 58.9 375 21.3
Lj2P459T34 Lonicera japonica HOM05D000151 ORTHO05D000074 1.0e-06 58.9 275 25.5
Os06g0148900 Oryza sativa ssp. japonica HOM05D011330 ORTHO05D013903 1.0e-06 58.9 60 46.7
TWI38G0386 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 1.0e-06 58.9 335 25.4
PGR142G1600 Punica granatum HOM05D001286 ORTHO05D000440 1.4e-06 58.5 352 23.6
arahy.Tifrunner.gnm1.ann1.PYC0TU Arachis hypogaea HOM05D000151 ORTHO05D000074 1.8e-06 58.2 384 23.2
Gorai.002G201700 Gossypium raimondii HOM05D000151 ORTHO05D000074 1.8e-06 58.2 419 22.4
Potri.005G105400 Populus trichocarpa HOM05D000151 ORTHO05D000074 1.8e-06 58.2 416 21.2
TAR636G0604 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.8e-06 58.2 397 22.7
TAR636G1293 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.8e-06 58.2 414 22.7
MSTRG.25800 Avicennia marina HOM05D000151 ORTHO05D000074 2.3e-06 57.8 416 25.2
RcHm_v2.0_Chr4g0393391 Rosa chinensis HOM05D007346 ORTHO05D009044 3.0e-06 57.4 227 26.4
SHI05785 Sapria himalayana HOM05D000151 ORTHO05D000074 3.0e-06 57.4 381 22.6
Zm00001eb167860 Zea mays HOM05D010462 ORTHO05D012694 3.0e-06 57.4 383 23.2
Zm00001eb236630 Zea mays HOM05D010462 ORTHO05D012694 3.9e-06 57.0 393 22.6
SGA_v2.0_scaffold32G13324 Striga asiatica HOM05D000151 ORTHO05D000074 5.1e-06 56.6 295 22.7
Rhsim02G0249600 Rhododendron simsii HOM05D000151 ORTHO05D000074 6.7e-06 56.2 404 21.0
Zm00001eb167880 Zea mays HOM05D010462 ORTHO05D012694 6.7e-06 56.2 386 23.1


User provided reference genes

Program Settings