Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0594200 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 9.5e-185 650.6 406 100.0
Os10g0104500 Oryza sativa ssp. japonica HOM05D003606 ORTHO05D004650 1.8e-167 593.2 406 93.1
Zm00001eb297740 Zea mays HOM05D003606 ORTHO05D004650 5.1e-162 575.1 388 94.1
Solyc03g112530.3 Solanum lycopersicum HOM05D003606 ORTHO05D004650 1.6e-136 490.3 392 76.5
Sopen03g031590 Solanum pennellii HOM05D003606 ORTHO05D004650 1.6e-136 490.3 392 76.5
PGSC0003DMG400018107 Solanum tuberosum HOM05D003606 ORTHO05D004650 2.8e-136 489.6 392 76.5
Actinidia02534 Actinidia chinensis HOM05D000009 ORTHO05D004650 4.8e-136 488.8 392 79.1
Nitab4.5_0001284g0090 Nicotiana tabacum HOM05D003606 ORTHO05D004650 4.8e-136 488.8 405 70.6
Eucgr.G03357 Eucalyptus grandis HOM05D003606 ORTHO05D004650 1.8e-135 486.9 390 81.3
Ciclev10015115m.g Citrus clementina HOM05D003606 ORTHO05D004650 4.0e-135 485.7 392 68.6
GSVIVG01032166001 Vitis vinifera HOM05D003606 ORTHO05D004650 4.0e-135 485.7 406 79.3
CAN.G338.7 Capsicum annuum HOM05D003606 ORTHO05D004650 5.3e-135 485.3 406 76.1
CDE02G3858 Ceratophyllum demersum HOM05D003606 ORTHO05D004650 5.3e-135 485.3 390 81.0
Nn5g28763 Nelumbo nucifera HOM05D003606 ORTHO05D004650 5.3e-135 485.3 390 74.4
TWI32G0899 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 9.0e-135 484.6 390 80.8
Sabra09G0042600 Salix brachista HOM05D003606 ORTHO05D004650 1.2e-134 484.2 390 77.9
Sc23g0005910 Simmondsia chinensis HOM05D003606 ORTHO05D004650 1.5e-134 483.8 399 78.7
Dinv09318 Davidia involucrata HOM05D003606 ORTHO05D004650 2.0e-134 483.4 390 81.3
Cc02_g29020 Coffea canephora HOM05D003606 ORTHO05D004650 4.5e-134 482.3 392 80.4
SalBow4G1900 Salvia bowleyana HOM05D003606 ORTHO05D004650 5.8e-134 481.9 400 67.2
MELO3C023992.2 Cucumis melo HOM05D003606 ORTHO05D004650 1.0e-133 481.1 392 79.8
CsaV3_3G031990 Cucumis sativus L. HOM05D003606 ORTHO05D004650 1.0e-133 481.1 392 79.8
Ca_19553_v3 Cicer arietinum L. HOM05D003606 ORTHO05D004650 1.7e-133 480.3 390 72.1
PSO675G6796 Papaver somniferum HOM05D003606 ORTHO05D004650 4.9e-133 478.8 406 71.9
HanXRQChr17g0563081 Helianthus annuus HOM05D003606 ORTHO05D004650 6.5e-133 478.4 401 73.8
Gohir.A08G142700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 2.5e-132 476.5 399 79.9
Cfa010803 Carpinus fangiana HOM05D003606 ORTHO05D004650 3.2e-132 476.1 401 79.1
Gohir.D08G163700 Gossypium hirsutum HOM05D003606 ORTHO05D004650 3.2e-132 476.1 399 79.9
PSO541G2647 Papaver somniferum HOM05D003606 ORTHO05D004650 3.2e-132 476.1 406 71.7
TWI34G0860 Tripterygium wilfordii HOM05D003606 ORTHO05D004650 3.2e-132 476.1 390 80.8
ECA234G3512 Erigeron canadensis HOM05D003606 ORTHO05D004650 4.2e-132 475.7 394 74.1
Lj5g0022697 Lotus japonicus HOM05D003606 ORTHO05D004650 4.2e-132 475.7 390 80.3
Gorai.004G170600 Gossypium raimondii HOM05D003606 ORTHO05D004650 7.1e-132 474.9 399 79.7
Cpa.g.sc19.249 Carica papaya HOM05D003606 ORTHO05D004650 1.2e-131 474.2 390 70.3
COL.COLO4_04879 Corchorus olitorius HOM05D003606 ORTHO05D004650 1.2e-131 474.2 395 79.0
Manes.10G139000 Manihot esculenta HOM05D003606 ORTHO05D004650 1.2e-131 474.2 390 80.3
Thecc.01G407200 Theobroma cacao HOM05D003606 ORTHO05D004650 1.2e-131 474.2 399 79.2
AUR62029807 Chenopodium quinoa HOM05D003606 ORTHO05D004650 1.6e-131 473.8 427 65.8
Migut.D00412 Erythranthe guttata HOM05D003606 ORTHO05D004650 1.6e-131 473.8 390 79.5
Potri.009G058000 Populus trichocarpa HOM05D003606 ORTHO05D004650 1.6e-131 473.8 390 80.3
Duzib138G0203 Durio zibethinus HOM05D003606 ORTHO05D004650 2.1e-131 473.4 403 78.4
SGA_v2.0_scaffold1G00601 Striga asiatica HOM05D003606 ORTHO05D004650 4.6e-131 472.2 386 79.5
Dinv43413 Davidia involucrata HOM05D003606 ORTHO05D004650 6.0e-131 471.9 390 80.3
Aqoxy2G00153 Aquilegia oxysepala HOM05D003606 ORTHO05D004650 7.9e-131 471.5 392 79.8
AUR62023088 Chenopodium quinoa HOM05D003606 ORTHO05D004650 7.9e-131 471.5 427 65.6
Glyma.16G165100 Glycine max HOM05D003606 ORTHO05D004650 7.9e-131 471.5 390 79.5
Lj3A990T71 Lonicera japonica HOM05D003606 ORTHO05D004650 7.9e-131 471.5 392 79.8
VMungo0464G1676 Vigna mungo HOM05D003606 ORTHO05D004650 7.9e-131 471.5 390 79.2
MSTRG.2635 Avicennia marina HOM05D003606 ORTHO05D004650 1.0e-130 471.1 389 79.2
PGR031G1688 Punica granatum HOM05D003606 ORTHO05D004650 1.8e-130 470.3 390 77.4
Phvul.004G092500 Phaseolus vulgaris HOM05D003606 ORTHO05D004650 3.0e-130 469.5 390 79.0
RcHm_v2.0_Chr1g0317321 Rosa chinensis HOM05D003606 ORTHO05D004650 3.0e-130 469.5 390 71.5
Atru.chr11.2590 Acer truncatum HOM05D003606 ORTHO05D004650 5.1e-130 468.8 392 80.1
Haze_03155 Corylus avellana HOM05D003606 ORTHO05D004650 5.1e-130 468.8 401 78.6
TPR.G14490 Trifolium pratense HOM05D003606 ORTHO05D004650 5.1e-130 468.8 390 70.3
Lalb_Chr21g0315701 Lupinus albus HOM05D003606 ORTHO05D004650 1.1e-129 467.6 390 79.2
Rhsim07G0058400 Rhododendron simsii HOM05D003606 ORTHO05D004650 1.5e-129 467.2 392 79.6
vmacro13693 Vaccinium macrocarpon HOM05D003606 ORTHO05D004650 1.9e-129 466.8 392 79.3
HanXRQChr16g0524861 Helianthus annuus HOM05D003606 ORTHO05D004650 3.3e-129 466.1 401 77.3
CiPaw.05G162700 Carya illinoinensis HOM05D003606 ORTHO05D004650 4.3e-129 465.7 400 76.8
Glyma.02G080600 Glycine max HOM05D003606 ORTHO05D004650 7.4e-129 464.9 390 79.0
THA.LOC104819092 Tarenaya hassleriana HOM05D003606 ORTHO05D004650 9.6e-129 464.5 390 66.7
Sed0024972 Sechium edule HOM05D003606 ORTHO05D004650 1.6e-128 463.8 390 78.7
Prupe.2G020500 Prunus persica HOM05D003606 ORTHO05D004650 4.8e-128 462.2 390 79.2
ATR0626G036 Amborella trichopoda HOM05D003606 ORTHO05D004650 6.2e-128 461.8 390 65.6
Medtr1g054300 Medicago truncatula HOM05D003606 ORTHO05D004650 6.2e-128 461.8 390 69.5
Ah.10g038660 Amaranthus hybridus HOM05D003606 ORTHO05D004650 2.4e-127 459.9 408 66.4
CiPaw.05G024300 Carya illinoinensis HOM05D003606 ORTHO05D004650 4.0e-127 459.1 400 77.2
Lsat_1_v5_gn_4_31941 Lactuca sativa HOM05D003606 ORTHO05D004650 2.0e-126 456.8 392 78.3
SGA_v2.0_scaffold138G35254 Striga asiatica HOM05D003606 ORTHO05D004650 1.3e-125 454.1 389 75.8
FvH4_7g01500 Fragaria vesca HOM05D003606 ORTHO05D004650 2.9e-125 453.0 391 69.8
FAN01G0800 Fragaria x ananassa HOM05D003606 ORTHO05D004650 2.9e-125 453.0 391 69.8
FAN03G2659 Fragaria x ananassa HOM05D003606 ORTHO05D004650 8.4e-125 451.4 400 68.5
DCAR_003761 Daucus carota HOM05D003606 ORTHO05D004650 1.1e-124 451.1 390 78.2
FAN06G2132 Fragaria x ananassa HOM05D003606 ORTHO05D004650 1.4e-124 450.7 391 65.0
FAN10G3084 Fragaria x ananassa HOM05D003606 ORTHO05D004650 1.9e-124 450.3 400 68.2
Psat6g110240 Pisum sativum HOM05D003606 ORTHO05D004650 2.5e-124 449.9 390 67.7
MD02G1305600 Malus domestica HOM05D003606 ORTHO05D004650 5.5e-124 448.7 399 70.7
BcaC03g14497 Brassica carinata HOM05D003606 ORTHO05D004650 2.3e-122 443.4 402 71.1
C02p19350 Brassica napus HOM05D003606 ORTHO05D004650 2.3e-122 443.4 402 71.1
BolC2t08070H Brassica oleracea HOM05D003606 ORTHO05D004650 2.3e-122 443.4 402 71.1
A02p11600 Brassica napus HOM05D003606 ORTHO05D004650 3.0e-122 443.0 402 71.1
BraA02t06222Z Brassica rapa HOM05D003606 ORTHO05D004650 3.0e-122 443.0 402 71.1
Thhalv10013442m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 3.0e-122 443.0 399 71.7
MD17G1287700 Malus domestica HOM05D003606 ORTHO05D004650 3.9e-122 442.6 390 77.7
Peaxi162Scf00089g01530 Petunia axillaris HOM05D003606 ORTHO05D004650 1.1e-121 441.0 392 75.5
BcaB05g21983 Brassica carinata HOM05D003606 ORTHO05D004650 1.9e-121 440.3 404 70.8
AT5G52820 Arabidopsis thaliana HOM05D003606 ORTHO05D004650 1.6e-120 437.2 390 72.8
ClCG10G012220 Citrullus lanatus HOM05D003606 ORTHO05D004650 1.6e-120 437.2 405 72.1
AL8G27260 Arabidopsis lyrata HOM05D003606 ORTHO05D004650 2.8e-120 436.4 390 72.6
Sp6g14980 Schrenkiella parvula HOM05D003606 ORTHO05D004650 4.8e-120 435.6 388 72.2
SEGI_00890 Sequoiadendron giganteum HOM05D003606 ORTHO05D004650 1.8e-119 433.7 406 65.8
Carub.0008s1298 Capsella rubella HOM05D003606 ORTHO05D004650 4.1e-119 432.6 402 71.1
Aa31LG3G9060 Aethionema arabicum HOM05D003606 ORTHO05D004650 5.3e-119 432.2 404 70.5
Nitab4.5_0012005g0010 Nicotiana tabacum HOM05D003606 ORTHO05D004650 2.0e-118 430.3 405 64.9
CARHR265750 Cardamine hirsuta HOM05D003606 ORTHO05D004650 2.9e-117 426.4 399 65.7
arahy.Tifrunner.gnm1.ann1.V59V4E Arachis hypogaea HOM05D003606 ORTHO05D004650 1.4e-116 424.1 390 75.4
SHI00285 Sapria himalayana HOM05D003606 ORTHO05D004650 4.2e-116 422.5 432 60.4
TAR633G2243 Trochodendron aralioides HOM05D003606 ORTHO05D004650 7.2e-116 421.8 347 79.5
Hund21610 Selenicereus undatus HOM05D003606 ORTHO05D004650 2.1e-115 420.2 432 62.0
arahy.Tifrunner.gnm1.ann1.F9F3MK Arachis hypogaea HOM05D003606 ORTHO05D004650 3.6e-115 419.5 390 75.1
Oeu025828.1 Olea europaea HOM05D003606 ORTHO05D004650 1.4e-114 417.5 528 58.3
arahy.Tifrunner.gnm1.ann1.GAUK41 Arachis hypogaea HOM05D003606 ORTHO05D004650 1.8e-114 417.2 390 74.9
Manes.07G008500 Manihot esculenta HOM05D003606 ORTHO05D004650 1.3e-112 411.0 390 73.8
CANSAT01G2566 Cannabis sativa HOM05D003606 ORTHO05D004650 8.2e-112 408.3 399 69.7
arahy.Tifrunner.gnm1.ann1.ZXEF1Z Arachis hypogaea HOM05D003606 ORTHO05D004650 2.4e-111 406.8 390 63.8
QL06p005538 Quercus lobata HOM05D003606 ORTHO05D004650 3.1e-111 406.4 368 75.3
CBR_g38286 Chara braunii HOM05D003606 ORTHO05D004650 4.1e-111 406.0 397 59.7
Thhalv10025051m.g Eutrema salsugineum HOM05D003606 ORTHO05D004650 9.4e-108 394.8 407 56.5
BcaB08g35635 Brassica carinata HOM05D003606 ORTHO05D004650 1.8e-106 390.6 401 52.6
HPP92_026819 Vanilla planifolia HOM05D003606 ORTHO05D004650 2.3e-106 390.2 450 49.3
AagrBONN_evm.TU.Sc2ySwM_344.4930 Anthoceros agrestis HOM05D003606 ORTHO05D004650 5.7e-105 385.6 392 65.1
Pp3c1_35350 Physcomitrium patens HOM05D003606 ORTHO05D004650 7.4e-105 385.2 392 64.8
BolC7t45366H Brassica oleracea HOM05D003606 ORTHO05D004650 2.8e-104 383.3 394 57.4
BcaNung04849 Brassica carinata HOM05D003606 ORTHO05D004650 1.4e-103 380.9 402 56.0
BolC9t59770H Brassica oleracea HOM05D003606 ORTHO05D004650 1.4e-103 380.9 402 56.0
Mapoly0082s0085 Marchantia polymorpha HOM05D003606 ORTHO05D004650 1.4e-103 380.9 392 63.5
BcaC06g33533 Brassica carinata HOM05D003606 ORTHO05D004650 1.5e-102 377.5 416 55.0
C09p70260 Brassica napus HOM05D003606 ORTHO05D004650 4.5e-102 375.9 412 54.9
PSO541G4704 Papaver somniferum HOM05D003606 ORTHO05D004650 1.7e-101 374.0 380 57.4
BcaNung04664 Brassica carinata HOM05D003606 ORTHO05D004650 9.4e-100 368.2 394 56.1
C07p48580 Brassica napus HOM05D003606 ORTHO05D004650 1.6e-99 367.5 428 52.8
BcaC04g20537 Brassica carinata HOM05D003606 ORTHO05D004650 3.9e-98 362.8 416 50.2
SGA_v2.0_scaffold90G27689 Striga asiatica HOM05D003606 ORTHO05D004650 5.2e-98 362.5 391 68.8
unitig_26.g10141 Utricularia gibba HOM05D003606 ORTHO05D004650 6.7e-98 362.1 404 55.9
SMO259G0032 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 5.7e-97 359.0 407 52.6
MCO05G213 Micromonas commoda HOM05D003606 ORTHO05D004650 4.2e-92 342.8 405 51.1
AUR62009405 Chenopodium quinoa HOM05D003606 ORTHO05D004650 9.4e-92 341.7 294 76.5
A10p29890 Brassica napus HOM05D003606 ORTHO05D004650 9.8e-89 331.6 412 48.8
TPR.G7603 Trifolium pratense HOM05D003606 ORTHO05D004650 4.8e-88 329.3 334 61.7
BcaC06g32566 Brassica carinata HOM05D003606 ORTHO05D004650 5.9e-78 295.8 391 45.3
Hund00228 Selenicereus undatus HOM05D003606 ORTHO05D004650 5.0e-77 292.7 378 50.3
MD09G1280600 Malus domestica HOM05D003606 ORTHO05D004650 6.6e-77 292.4 247 75.7
PRCOL_00003575 Prasinoderma coloniale HOM05D003606 ORTHO05D004650 2.3e-74 283.9 431 45.5
BcaNung05838 Brassica carinata HOM05D003606 ORTHO05D004650 1.2e-73 281.6 387 42.6
Ca_22822_v3 Cicer arietinum L. HOM05D003606 ORTHO05D000002 4.1e-71 273.1 198 65.7
Haze_26363 Corylus avellana HOM05D003606 ORTHO05D004650 7.0e-71 272.3 399 43.6
BraA10t45027Z Brassica rapa HOM05D003606 ORTHO05D004650 1.0e-66 258.5 255 61.2
COL.COLO4_04880 Corchorus olitorius HOM05D003606 ORTHO05D004650 7.5e-65 252.3 293 70.0
Cre01.g000600 Chlamydomonas reinhardtii HOM05D003606 ORTHO05D004650 6.4e-64 249.2 388 47.9
BraA10t43107Z Brassica rapa HOM05D003606 ORTHO05D004650 3.3e-60 236.9 260 56.5
A10p10270 Brassica napus HOM05D003606 ORTHO05D004650 4.7e-59 233.0 260 56.2
HanXRQChr15g0491881 Helianthus annuus HOM05D003606 ORTHO05D004650 3.2e-55 220.3 189 58.2
CSS0037178 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 2.5e-44 184.1 98 84.7
AUR62034729 Chenopodium quinoa HOM05D003606 ORTHO05D004650 2.1e-43 181.0 98 82.7
BolC9t57121H Brassica oleracea HOM05D003606 ORTHO05D004650 4.7e-43 179.9 294 37.4
C09p42410 Brassica napus HOM05D003606 ORTHO05D004650 1.8e-42 177.9 299 37.5
Cfa026891 Carpinus fangiana HOM05D003606 ORTHO05D004650 2.4e-42 177.6 399 36.6
Sc03g0002540 Simmondsia chinensis HOM05D003606 ORTHO05D004650 2.4e-42 177.6 123 69.9
CSS0009389 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 1.9e-39 167.9 129 64.3
Manes.07G009860 Manihot esculenta HOM05D003606 ORTHO05D004650 2.5e-36 157.5 83 83.1
BcaC06g33525 Brassica carinata HOM05D003606 ORTHO05D004650 6.4e-32 142.9 99 64.6
BraA10t45028Z Brassica rapa HOM05D003606 ORTHO05D004650 4.2e-31 140.2 95 69.5
BcaNung04851 Brassica carinata HOM05D003606 ORTHO05D004650 8.7e-29 132.5 102 61.8
Oeu060950.1 Olea europaea HOM05D003606 ORTHO05D016710 1.5e-28 131.7 185 42.2
Medtr0421s0030 Medicago truncatula HOM05D003606 ORTHO05D004650 1.2e-25 122.1 190 40.0
TAR636G3369 Trochodendron aralioides HOM05D003606 ORTHO05D003127 1.3e-24 118.6 141 46.8
MD09G1280700 Malus domestica HOM05D003606 ORTHO05D004650 1.1e-23 115.5 76 72.4
SalBow4G2833 Salvia bowleyana HOM05D003606 ORTHO05D004650 4.2e-23 113.6 294 36.4
CSS0038697 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D016710 1.2e-22 112.1 58 81.0
SMO259G0025 Selaginella moellendorffii HOM05D003606 ORTHO05D004650 9.0e-18 95.9 50 76.0
BcaC01g02187 Brassica carinata HOM05D003606 ORTHO05D016710 4.5e-17 93.6 120 63.3
BolC9t57120H Brassica oleracea HOM05D003606 ORTHO05D033191 3.8e-16 90.5 89 46.1
GSVIVG01032170001 Vitis vinifera HOM05D003606 ORTHO05D004650 9.3e-15 85.9 58 69.0
C02p14020 Brassica napus HOM05D003606 ORTHO05D016710 1.2e-14 85.5 164 31.7
TPR.G39665 Trifolium pratense HOM05D003606 ORTHO05D033191 1.6e-14 85.1 64 57.8
QL06p005531 Quercus lobata HOM05D011240 ORTHO05D014254 6.0e-14 83.2 39 94.9
COL.COLO4_24393 Corchorus olitorius HOM05D003606 ORTHO05D004650 2.3e-13 81.3 40 90.0
C09p42400 Brassica napus HOM05D003606 ORTHO05D033191 3.9e-13 80.5 75 46.7
TAR636G2756 Trochodendron aralioides HOM05D003606 ORTHO05D004650 1.1e-12 79.0 38 92.1
CSS0009074 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 7.4e-12 76.3 40 85.0
CSS0037126 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D043277 7.4e-12 76.3 40 85.0
Eucgr.G03346 Eucalyptus grandis HOM05D003606 ORTHO05D004650 7.4e-12 76.3 39 84.6
Hund00229 Selenicereus undatus HOM05D003606 ORTHO05D004650 2.1e-11 74.7 38 84.2
TPR.G8471 Trifolium pratense HOM05D003606 ORTHO05D004650 6.9e-10 69.7 49 67.3
BolC2t07520H Brassica oleracea HOM05D003606 ORTHO05D016710 1.2e-09 68.9 47 55.3
Oeu060951.1 Olea europaea HOM05D003606 ORTHO05D004650 4.5e-09 67.0 34 85.3
Eucgr.G03354 Eucalyptus grandis HOM05D003606 ORTHO05D004650 2.2e-08 64.7 39 74.4
CANSAT51G0014 Cannabis sativa HOM05D003606 ORTHO05D004650 2.5e-07 61.2 82 37.8
SMO364G0327 Selaginella moellendorffii HOM05D004232 ORTHO05D004909 3.5e-06 57.4 61 44.3
CSS0046585 Camellia sinensis var. sinensis HOM05D003606 ORTHO05D004650 4.6e-06 57.0 51 52.9
LjContig00155g0017542 Lotus japonicus HOM05D004669 ORTHO05D005767 4.6e-06 57.0 180 23.3


User provided reference genes

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