Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0592900 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 5.1e-98 361.3 214 100.0
Zm00001eb167650 Zea mays HOM05D006792 ORTHO05D008489 1.3e-72 276.9 245 60.0
HPP92_009608 Vanilla planifolia HOM05D006792 ORTHO05D008489 2.0e-46 189.9 200 51.5
Sed0017537 Sechium edule HOM05D006792 ORTHO05D008489 5.0e-45 185.3 210 48.1
ClCG08G015590 Citrullus lanatus HOM05D006792 ORTHO05D008489 1.9e-44 183.3 205 48.3
CsaV3_2G028180 Cucumis sativus L. HOM05D006792 ORTHO05D008489 3.3e-44 182.6 203 47.8
MELO3C010894.2 Cucumis melo HOM05D006792 ORTHO05D008489 9.5e-44 181.0 203 48.3
Lj4A777T61 Lonicera japonica HOM05D006792 ORTHO05D008489 1.6e-43 180.3 205 50.2
Eucgr.L00645 Eucalyptus grandis HOM05D006792 ORTHO05D008489 2.1e-43 179.9 215 49.8
SGA_v2.0_scaffold217G42431 Striga asiatica HOM05D006792 ORTHO05D008489 2.8e-43 179.5 205 47.8
CSS0036769 Camellia sinensis var. sinensis HOM05D006792 ORTHO05D008489 1.0e-42 177.6 202 46.5
BcaC06g32375 Brassica carinata HOM05D006792 ORTHO05D008489 1.4e-42 177.2 205 46.3
C09p70370 Brassica napus HOM05D006792 ORTHO05D008489 1.4e-42 177.2 205 46.3
CSS0036679 Camellia sinensis var. sinensis HOM05D006792 ORTHO05D008489 1.4e-42 177.2 202 46.5
Rhsim06G0045800 Rhododendron simsii HOM05D006792 ORTHO05D008489 1.4e-42 177.2 207 47.3
Aqoxy5G01393 Aquilegia oxysepala HOM05D006792 ORTHO05D008489 1.8e-42 176.8 210 46.7
Dinv35992 Davidia involucrata HOM05D006792 ORTHO05D008489 3.0e-42 176.0 206 48.5
A10p29960 Brassica napus HOM05D006792 ORTHO05D008489 4.0e-42 175.6 209 46.4
BcaC06g32576 Brassica carinata HOM05D006792 ORTHO05D008489 5.2e-42 175.3 200 47.0
BraA10t45035Z Brassica rapa HOM05D006792 ORTHO05D008489 6.8e-42 174.9 209 46.4
Aa31LG5G9340 Aethionema arabicum HOM05D006792 ORTHO05D008489 8.9e-42 174.5 200 47.0
BolC9t59782H Brassica oleracea HOM05D006792 ORTHO05D008489 8.9e-42 174.5 205 45.4
EL10Ac3g05711 Beta vulgaris HOM05D006792 ORTHO05D008489 1.2e-41 174.1 218 44.0
FAN15G1697 Fragaria x ananassa HOM05D006792 ORTHO05D008489 1.5e-41 173.7 206 48.1
TAR381G0050 Trochodendron aralioides HOM05D006792 ORTHO05D008489 2.0e-41 173.3 206 48.1
vmacro21565 Vaccinium macrocarpon HOM05D006792 ORTHO05D008489 2.0e-41 173.3 208 45.7
Carub.0006s0578 Capsella rubella HOM05D006792 ORTHO05D008489 2.6e-41 172.9 200 45.5
MD15G1036100 Malus domestica HOM05D006792 ORTHO05D008489 3.4e-41 172.6 197 47.7
Potri.014G035300 Populus trichocarpa HOM05D006792 ORTHO05D008489 3.4e-41 172.6 205 45.4
Sp6g36430 Schrenkiella parvula HOM05D006792 ORTHO05D008489 3.4e-41 172.6 202 46.0
GSVIVG01009569001 Vitis vinifera HOM05D006792 ORTHO05D008489 3.4e-41 172.6 213 46.5
SGA_v2.0_scaffold127G34009 Striga asiatica HOM05D006792 ORTHO05D008489 4.4e-41 172.2 205 46.3
Nitab4.5_0000074g0180 Nicotiana tabacum HOM05D006792 ORTHO05D008489 5.7e-41 171.8 208 46.2
TAR625G1025 Trochodendron aralioides HOM05D006792 ORTHO05D008489 5.7e-41 171.8 211 46.0
AL6G16990 Arabidopsis lyrata HOM05D006792 ORTHO05D008489 7.5e-41 171.4 202 46.5
FAN27G1218 Fragaria x ananassa HOM05D006792 ORTHO05D008489 7.5e-41 171.4 193 47.7
Nitab4.5_0009129g0010 Nicotiana tabacum HOM05D006792 ORTHO05D008489 7.5e-41 171.4 207 45.4
Carub.0006s0531 Capsella rubella HOM05D006792 ORTHO05D008489 1.3e-40 170.6 194 45.9
Prupe.1G390300 Prunus persica HOM05D006792 ORTHO05D008489 1.3e-40 170.6 207 46.4
Actinidia15267 Actinidia chinensis HOM05D006792 ORTHO05D008489 1.7e-40 170.2 202 46.0
CAN.G1110.13 Capsicum annuum HOM05D006792 ORTHO05D008489 1.7e-40 170.2 208 44.7
Cpa.g.sc376.3 Carica papaya HOM05D006792 ORTHO05D008489 1.7e-40 170.2 199 45.2
FvH4_2g40760 Fragaria vesca HOM05D006792 ORTHO05D008489 1.7e-40 170.2 208 46.2
AUR62021223 Chenopodium quinoa HOM05D006792 ORTHO05D008489 2.2e-40 169.9 221 41.2
AL6G16520 Arabidopsis lyrata HOM05D006792 ORTHO05D008489 2.9e-40 169.5 200 45.0
PSO170G4587 Papaver somniferum HOM05D006792 ORTHO05D008489 2.9e-40 169.5 201 47.3
Ah.07g209080 Amaranthus hybridus HOM05D006792 ORTHO05D008489 3.7e-40 169.1 213 44.1
Lsat_1_v5_gn_4_124401 Lactuca sativa HOM05D006792 ORTHO05D008489 3.7e-40 169.1 203 45.3
Nn5g30170 Nelumbo nucifera HOM05D006792 ORTHO05D008489 3.7e-40 169.1 213 45.1
TWI36G0635 Tripterygium wilfordii HOM05D006792 ORTHO05D008489 3.7e-40 169.1 203 46.8
AT5G06430 Arabidopsis thaliana HOM05D006792 ORTHO05D008489 4.9e-40 168.7 194 45.9
AUR62016018 Chenopodium quinoa HOM05D006792 ORTHO05D008489 6.4e-40 168.3 221 40.7
Lalb_Chr06g0172721 Lupinus albus HOM05D006792 ORTHO05D008489 6.4e-40 168.3 209 45.5
ECA232G0465 Erigeron canadensis HOM05D006792 ORTHO05D008489 8.3e-40 167.9 194 45.9
RcHm_v2.0_Chr6g0299831 Rosa chinensis HOM05D006792 ORTHO05D008489 8.3e-40 167.9 192 47.4
Solyc10g006520.3 Solanum lycopersicum HOM05D006792 ORTHO05D008489 8.3e-40 167.9 206 45.1
Sopen10g002470 Solanum pennellii HOM05D006792 ORTHO05D008489 8.3e-40 167.9 206 45.1
PGR031G1590 Punica granatum HOM05D006792 ORTHO05D008489 1.1e-39 167.5 194 47.4
PGSC0003DMG400014433 Solanum tuberosum HOM05D006792 ORTHO05D008489 1.1e-39 167.5 208 45.2
Atru.chr13.615 Acer truncatum HOM05D006792 ORTHO05D008489 1.4e-39 167.2 192 46.4
Ciclev10002498m.g Citrus clementina HOM05D006792 ORTHO05D008489 1.4e-39 167.2 201 44.3
Thecc.08G014600 Theobroma cacao HOM05D006792 ORTHO05D008489 1.8e-39 166.8 198 46.5
Cc10_g03850 Coffea canephora HOM05D006792 ORTHO05D008489 3.2e-39 166.0 114 67.5
Lj5g0003340 Lotus japonicus HOM05D006792 ORTHO05D008489 3.2e-39 166.0 205 43.9
Manes.10G083100 Manihot esculenta HOM05D006792 ORTHO05D008489 3.2e-39 166.0 209 46.9
Peaxi162Scf00324g00610 Petunia axillaris HOM05D006792 ORTHO05D008489 4.1e-39 165.6 193 46.1
Thhalv10014748m.g Eutrema salsugineum HOM05D006792 ORTHO05D008489 7.0e-39 164.9 200 45.5
SalBow1G1949 Salvia bowleyana HOM05D006792 ORTHO05D008489 7.0e-39 164.9 193 47.7
CiPaw.15G064100 Carya illinoinensis HOM05D006792 ORTHO05D008489 9.2e-39 164.5 198 45.5
DCAR_008785 Daucus carota HOM05D006792 ORTHO05D008489 9.2e-39 164.5 204 44.6
Migut.C00611 Erythranthe guttata HOM05D006792 ORTHO05D008489 9.2e-39 164.5 202 47.0
CDE07G1453 Ceratophyllum demersum HOM05D006792 ORTHO05D008489 1.2e-38 164.1 204 42.6
Gohir.A06G015700 Gossypium hirsutum HOM05D006792 ORTHO05D008489 1.2e-38 164.1 194 46.4
SalBow6G5080 Salvia bowleyana HOM05D006792 ORTHO05D008489 1.6e-38 163.7 193 47.2
Hund23634 Selenicereus undatus HOM05D006792 ORTHO05D008489 1.6e-38 163.7 231 40.7
THA.LOC104803789 Tarenaya hassleriana HOM05D006792 ORTHO05D008489 1.6e-38 163.7 211 45.0
HanXRQChr09g0268121 Helianthus annuus HOM05D006792 ORTHO05D008489 2.0e-38 163.3 197 44.7
Sc02g0006830 Simmondsia chinensis HOM05D006792 ORTHO05D008489 2.0e-38 163.3 196 46.4
Psat6g128400 Pisum sativum HOM05D006792 ORTHO05D008489 2.7e-38 162.9 200 49.0
PGR031G1503 Punica granatum HOM05D006792 ORTHO05D008489 2.7e-38 162.9 194 46.9
COL.COLO4_26447 Corchorus olitorius HOM05D006792 ORTHO05D008489 3.5e-38 162.5 118 64.4
Haze_17574 Corylus avellana HOM05D006792 ORTHO05D008489 3.5e-38 162.5 209 44.0
QL02p006151 Quercus lobata HOM05D006792 ORTHO05D008489 3.5e-38 162.5 210 44.8
Medtr1g075100 Medicago truncatula HOM05D006792 ORTHO05D008489 4.6e-38 162.2 196 45.9
arahy.Tifrunner.gnm1.ann1.LP5K48 Arachis hypogaea HOM05D006792 ORTHO05D008489 1.0e-37 161.0 195 46.7
CARHR285910 Cardamine hirsuta HOM05D006792 ORTHO05D008489 1.0e-37 161.0 115 65.2
unitig_19.g30007 Utricularia gibba HOM05D006792 ORTHO05D008489 1.3e-37 160.6 204 46.6
Gohir.D06G013900 Gossypium hirsutum HOM05D006792 ORTHO05D008489 1.7e-37 160.2 194 45.9
Cfa018502 Carpinus fangiana HOM05D006792 ORTHO05D008489 2.3e-37 159.8 204 44.1
Glyma.20G204600 Glycine max HOM05D006792 ORTHO05D008489 3.0e-37 159.5 200 47.0
Sabra14G0025200 Salix brachista HOM05D006792 ORTHO05D008489 3.9e-37 159.1 192 44.3
arahy.Tifrunner.gnm1.ann1.LDJ6K5 Arachis hypogaea HOM05D006792 ORTHO05D008489 6.6e-37 158.3 194 45.9
Duzib041G0477 Durio zibethinus HOM05D006792 ORTHO05D008489 1.5e-36 157.1 200 44.0
CANSAT56G4245 Cannabis sativa HOM05D006792 ORTHO05D008489 2.5e-36 156.4 199 44.7
Phvul.L001959 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 9.5e-36 154.5 198 45.5
TPR.G28895 Trifolium pratense HOM05D006792 ORTHO05D008489 9.5e-36 154.5 203 43.8
Duzib093G1402 Durio zibethinus HOM05D006792 ORTHO05D008489 1.2e-35 154.1 110 64.5
Os11g0597500 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 2.8e-35 152.9 151 57.0
Ca_09830_v3 Cicer arietinum L. HOM05D002720 ORTHO05D002901 1.8e-34 150.2 112 60.7
ATR0225G026 Amborella trichopoda HOM05D006792 ORTHO05D008489 1.2e-33 147.5 184 45.7
VMungo0720G1195 Vigna mungo HOM05D006792 ORTHO05D008489 1.3e-32 144.1 221 40.7
Glyma.09G029200 Glycine max HOM05D006792 ORTHO05D008489 3.7e-32 142.5 107 62.6
SMO184G0001 Selaginella moellendorffii HOM05D006792 ORTHO05D008489 8.3e-32 141.4 111 60.4
Pp3c14_7090 Physcomitrium patens HOM05D006792 ORTHO05D008489 1.1e-28 131.0 108 58.3
Mapoly0072s0021 Marchantia polymorpha HOM05D006792 ORTHO05D008489 1.6e-27 127.1 106 57.5
Phvul.008G161700 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 1.4e-26 124.0 111 56.8
CBR_g61518 Chara braunii HOM05D006792 ORTHO05D008489 3.1e-26 122.9 115 52.2
unitig_8.g5015 Utricularia gibba HOM05D006792 ORTHO05D008489 3.2e-23 112.8 204 38.7
CDE04G1657 Ceratophyllum demersum HOM05D006792 ORTHO05D008489 9.2e-23 111.3 157 40.1
MSTRG.1327 Avicennia marina HOM05D006792 ORTHO05D008489 2.3e-18 96.7 157 37.6
Os11g0597601 Oryza sativa ssp. japonica HOM05D006792 ORTHO05D008489 1.2e-17 94.4 63 76.2
Oeu040900.1 Olea europaea HOM05D006792 ORTHO05D008489 1.5e-17 94.0 159 38.4
Gorai.010G016600 Gossypium raimondii HOM05D006792 ORTHO05D008489 1.6e-14 84.0 146 35.6
Eucgr.E03397 Eucalyptus grandis HOM05D006792 ORTHO05D008489 6.0e-14 82.0 163 35.0
MD08G1060400 Malus domestica HOM05D006792 ORTHO05D008489 4.3e-12 75.9 45 73.3
CARHR206180 Cardamine hirsuta HOM05D006792 ORTHO05D008489 2.1e-11 73.6 124 37.1
Rhsim06G0045400 Rhododendron simsii HOM05D000500 ORTHO05D000367 3.6e-11 72.8 65 53.8
Cre17.g702150 Chlamydomonas reinhardtii HOM05D005776 ORTHO05D007333 5.8e-09 65.5 105 35.2
Cre14.g615250 Chlamydomonas reinhardtii HOM05D006792 ORTHO05D008489 6.4e-08 62.0 99 38.4
Rhsim06G0045200 Rhododendron simsii HOM05D000500 ORTHO05D000367 1.9e-07 60.5 58 51.7
Phvul.004G112200 Phaseolus vulgaris HOM05D006792 ORTHO05D008489 4.2e-07 59.3 128 35.2
QL03p014147 Quercus lobata HOM05D006792 ORTHO05D008489 6.0e-06 55.5 61 45.9
Pp3c22_350 Physcomitrium patens HOM05D005776 ORTHO05D007333 7.8e-06 55.1 73 35.6


User provided reference genes

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