Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0587300 Oryza sativa ssp. japonica HOM05D003827 ORTHO05D004518 0.0e+00 1343.6 839 100.0
Zm00001eb200650 Zea mays HOM05D003827 ORTHO05D004518 2.8e-168 596.7 721 56.3
MD03G1256300 Malus domestica HOM05D003827 ORTHO05D004518 1.3e-59 235.7 822 32.0
COL.COLO4_06099 Corchorus olitorius HOM05D003827 ORTHO05D004518 8.2e-59 233.0 813 32.7
Cc00_g27210 Coffea canephora HOM05D003827 ORTHO05D004518 1.1e-58 232.6 836 32.3
Prupe.8G233400 Prunus persica HOM05D003827 ORTHO05D004518 2.0e-57 228.4 807 33.2
Cfa006213 Carpinus fangiana HOM05D003827 ORTHO05D004518 2.6e-57 228.0 822 31.6
Haze_04629 Corylus avellana HOM05D003827 ORTHO05D004518 4.5e-57 227.3 834 31.4
TAR362G1025 Trochodendron aralioides HOM05D003827 ORTHO05D004518 1.0e-56 226.1 859 30.7
Nn1g02509 Nelumbo nucifera HOM05D003827 ORTHO05D004518 1.7e-56 225.3 864 32.1
Dinv22492 Davidia involucrata HOM05D003827 ORTHO05D004518 2.2e-56 224.9 832 31.0
Eucgr.B01477 Eucalyptus grandis HOM05D003827 ORTHO05D004518 2.9e-56 224.6 855 31.7
MBI04_g36520_MAGBIO Magnolia biondii HOM05D003827 ORTHO05D004518 3.8e-56 224.2 827 32.3
FAN15G1200 Fragaria x ananassa HOM05D003827 ORTHO05D004518 6.5e-56 223.4 819 32.2
Ciclev10018911m.g Citrus clementina HOM05D003827 ORTHO05D004518 4.2e-55 220.7 840 31.3
Potri.002G046700 Populus trichocarpa HOM05D003827 ORTHO05D004518 4.2e-55 220.7 823 32.3
Thecc.01G269500 Theobroma cacao HOM05D003827 ORTHO05D004518 1.2e-54 219.2 823 31.7
CsaV3_2G013800 Cucumis sativus L. HOM05D003827 ORTHO05D004518 2.7e-54 218.0 804 31.8
AUR62032274 Chenopodium quinoa HOM05D003827 ORTHO05D004518 3.6e-54 217.6 762 35.8
FAN24G2611 Fragaria x ananassa HOM05D003827 ORTHO05D004518 8.0e-54 216.5 817 31.5
Actinidia19972 Actinidia chinensis HOM05D003827 ORTHO05D004518 1.8e-53 215.3 768 31.6
Potri.005G216300 Populus trichocarpa HOM05D003827 ORTHO05D004518 4.0e-53 214.2 818 31.9
RcHm_v2.0_Chr6g0289731 Rosa chinensis HOM05D003827 ORTHO05D004518 6.8e-53 213.4 813 32.7
Aqoxy2G03489 Aquilegia oxysepala HOM05D003827 ORTHO05D004518 1.2e-52 212.6 799 31.4
Glyma.02G143400 Glycine max HOM05D003827 ORTHO05D004518 2.0e-52 211.8 764 32.9
Sabra05G0165800 Salix brachista HOM05D003827 ORTHO05D004518 3.4e-52 211.1 819 32.4
MD11G1277100 Malus domestica HOM05D003827 ORTHO05D004518 4.4e-52 210.7 822 31.1
Gohir.A07G207900 Gossypium hirsutum HOM05D003827 ORTHO05D004518 5.7e-52 210.3 819 30.8
Duzib138G1561 Durio zibethinus HOM05D003827 ORTHO05D004518 9.7e-52 209.5 816 31.7
SalBow6G3195 Salvia bowleyana HOM05D003827 ORTHO05D004518 9.7e-52 209.5 801 32.0
CiPaw.07G086100 Carya illinoinensis HOM05D003827 ORTHO05D004518 1.3e-51 209.1 857 31.0
Duzib133G0640 Durio zibethinus HOM05D003827 ORTHO05D004518 1.3e-51 209.1 825 31.5
Aqoxy5G00378 Aquilegia oxysepala HOM05D003827 ORTHO05D004518 1.7e-51 208.8 821 30.6
Sc05g0001120 Simmondsia chinensis HOM05D003827 ORTHO05D004518 1.7e-51 208.8 780 31.8
Atru.chr5.1540 Acer truncatum HOM05D003827 ORTHO05D004518 2.2e-51 208.4 826 31.2
CANSAT25G1147 Cannabis sativa HOM05D003827 ORTHO05D004518 2.2e-51 208.4 818 31.3
PGR119G2143 Punica granatum HOM05D003827 ORTHO05D004518 2.2e-51 208.4 792 31.7
Ah.02g111340 Amaranthus hybridus HOM05D003827 ORTHO05D004518 2.8e-51 208.0 779 31.6
Cpa.g.c31397 Carica papaya HOM05D003827 ORTHO05D004518 2.8e-51 208.0 827 31.1
EL10Ac5g10483 Beta vulgaris HOM05D003827 ORTHO05D004518 3.7e-51 207.6 817 32.2
FAN27G1464 Fragaria x ananassa HOM05D003827 ORTHO05D004518 3.7e-51 207.6 817 31.2
MELO3C014319.2 Cucumis melo HOM05D003827 ORTHO05D004518 6.3e-51 206.8 828 30.1
vmacro02620 Vaccinium macrocarpon HOM05D003827 ORTHO05D004518 6.3e-51 206.8 778 31.5
VMungo0720G1763 Vigna mungo HOM05D003827 ORTHO05D004518 8.3e-51 206.5 766 31.7
arahy.Tifrunner.gnm1.ann1.735JS3 Arachis hypogaea HOM05D003827 ORTHO05D004518 1.8e-50 205.3 797 29.5
Glyma.10G031000 Glycine max HOM05D003827 ORTHO05D004518 7.0e-50 203.4 776 32.6
AUR62011961 Chenopodium quinoa HOM05D003827 ORTHO05D004518 9.1e-50 203.0 776 33.6
arahy.Tifrunner.gnm1.ann1.900HG3 Arachis hypogaea HOM05D003827 ORTHO05D004518 2.0e-49 201.8 796 29.1
Sabra02G0037600 Salix brachista HOM05D003827 ORTHO05D004518 1.0e-48 199.5 882 30.0
Lj1A56T63 Lonicera japonica HOM05D003827 ORTHO05D004518 1.7e-48 198.7 836 31.8
Medtr1g071070 Medicago truncatula HOM05D003827 ORTHO05D004518 5.0e-48 197.2 786 29.9
CSS0001059 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 6.5e-48 196.8 812 29.4
SalBow4G1898 Salvia bowleyana HOM05D003827 ORTHO05D004518 6.5e-48 196.8 780 30.6
Phvul.007G175800 Phaseolus vulgaris HOM05D003827 ORTHO05D004518 8.5e-48 196.4 762 31.6
SalBow4G1883 Salvia bowleyana HOM05D003827 ORTHO05D004518 8.5e-48 196.4 780 30.6
Gohir.D11G131801 Gossypium hirsutum HOM05D003827 ORTHO05D004518 1.1e-47 196.1 829 30.2
Sed0018560 Sechium edule HOM05D003827 ORTHO05D004518 1.1e-47 196.1 824 30.6
MSTRG.21519 Avicennia marina HOM05D003827 ORTHO05D004518 1.9e-47 195.3 830 30.5
Manes.05G082700 Manihot esculenta HOM05D003827 ORTHO05D004518 1.9e-47 195.3 826 29.9
Lj5g0023922 Lotus japonicus HOM05D003827 ORTHO05D004518 2.5e-47 194.9 778 33.4
Migut.N02178 Erythranthe guttata HOM05D003827 ORTHO05D004518 3.2e-47 194.5 781 29.8
Migut.D00347 Erythranthe guttata HOM05D003827 ORTHO05D004518 4.2e-47 194.1 810 30.7
FAN20G2722 Fragaria x ananassa HOM05D003827 ORTHO05D004518 1.2e-46 192.6 818 32.3
Manes.01G203100 Manihot esculenta HOM05D003827 ORTHO05D004518 1.2e-46 192.6 828 29.7
Hund02868 Selenicereus undatus HOM05D003827 ORTHO05D004518 1.2e-46 192.6 766 31.6
QL12p042499 Quercus lobata HOM05D003827 ORTHO05D004518 1.6e-46 192.2 820 30.5
Ca_09721_v3 Cicer arietinum L. HOM05D003827 ORTHO05D004518 6.1e-46 190.3 786 30.9
Gorai.007G140900 Gossypium raimondii HOM05D003827 ORTHO05D004518 6.1e-46 190.3 833 30.1
MSTRG.12545 Avicennia marina HOM05D003827 ORTHO05D004518 1.4e-45 189.1 812 29.8
ClCG07G000540 Citrullus lanatus HOM05D003827 ORTHO05D004518 1.4e-45 189.1 834 30.2
SGA_v2.0_scaffold81G26054 Striga asiatica HOM05D003827 ORTHO05D004518 1.4e-45 189.1 759 29.8
Gohir.A11G126200 Gossypium hirsutum HOM05D003827 ORTHO05D004518 1.8e-45 188.7 832 29.9
Oeu058798.1 Olea europaea HOM05D003827 ORTHO05D004518 6.8e-45 186.8 716 30.6
THA.LOC104817570 Tarenaya hassleriana HOM05D003827 ORTHO05D004518 2.0e-44 185.3 762 31.1
Rhsim01G0271400 Rhododendron simsii HOM05D003827 ORTHO05D004518 5.7e-44 183.7 807 28.9
CDE07G1346 Ceratophyllum demersum HOM05D003827 ORTHO05D004518 2.2e-43 181.8 829 29.1
Nitab4.5_0010556g0020 Nicotiana tabacum HOM05D003827 ORTHO05D004518 2.2e-43 181.8 864 29.6
PSO832G0360 Papaver somniferum HOM05D003827 ORTHO05D004518 2.2e-43 181.8 883 28.9
Nitab4.5_0000617g0200 Nicotiana tabacum HOM05D003827 ORTHO05D004518 2.8e-43 181.4 845 29.9
HanXRQChr01g0006931 Helianthus annuus HOM05D003827 ORTHO05D004518 6.3e-43 180.3 827 29.0
Lsat_1_v5_gn_5_184780 Lactuca sativa HOM05D003827 ORTHO05D004518 1.8e-42 178.7 811 29.1
CSS0010046 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 2.4e-42 178.3 615 32.2
MSTRG.18275 Avicennia marina HOM05D003827 ORTHO05D004518 4.1e-42 177.6 824 28.8
PSO210G6408 Papaver somniferum HOM05D003827 ORTHO05D004518 4.1e-42 177.6 883 28.9
Duzib211G0278 Durio zibethinus HOM05D003827 ORTHO05D004518 1.6e-41 175.6 822 28.1
Peaxi162Scf01038g00148 Petunia axillaris HOM05D003827 ORTHO05D004518 1.6e-41 175.6 835 29.0
Solyc07g008670.3 Solanum lycopersicum HOM05D003827 ORTHO05D004518 2.7e-41 174.9 847 28.5
Sopen07g004600 Solanum pennellii HOM05D003827 ORTHO05D004518 4.5e-41 174.1 855 28.1
arahy.Tifrunner.gnm1.ann1.S69P4W Arachis hypogaea HOM05D003827 ORTHO05D004518 5.9e-41 173.7 787 30.7
CARHR291540 Cardamine hirsuta HOM05D003827 ORTHO05D004518 7.7e-41 173.3 734 29.7
MSTRG.17468 Avicennia marina HOM05D003827 ORTHO05D004518 1.3e-40 172.6 815 30.3
Rhsim13G0030000 Rhododendron simsii HOM05D003827 ORTHO05D004518 2.9e-40 171.4 804 28.7
GSVIVG01003137001 Vitis vinifera HOM05D003827 ORTHO05D004518 2.9e-40 171.4 617 34.5
FvH4_2g22810 Fragaria vesca HOM05D003827 ORTHO05D004518 5.0e-40 170.6 604 33.4
DCAR_012508 Daucus carota HOM05D003827 ORTHO05D004518 3.3e-39 167.9 797 29.2
Psat6g058320 Pisum sativum HOM05D003827 ORTHO05D004518 9.5e-39 166.4 790 28.0
Gorai.004G075700 Gossypium raimondii HOM05D003827 ORTHO05D004518 1.2e-38 166.0 788 30.2
Lj1g0025199 Lotus japonicus HOM05D003827 ORTHO05D004518 2.8e-38 164.9 765 28.1
PGSC0003DMG400022986 Solanum tuberosum HOM05D003827 ORTHO05D004518 3.0e-37 161.4 846 28.3
TAR633G1445 Trochodendron aralioides HOM05D003827 ORTHO05D004518 6.8e-37 160.2 589 33.4
arahy.Tifrunner.gnm1.ann1.X14VTN Arachis hypogaea HOM05D003827 ORTHO05D004518 8.9e-37 159.8 825 29.5
ECA248G3364 Erigeron canadensis HOM05D003827 ORTHO05D004518 8.9e-37 159.8 812 28.1
HPP92_024347 Vanilla planifolia HOM05D003827 ORTHO05D004518 3.4e-36 157.9 744 29.7
Psat3g061520 Pisum sativum HOM05D003827 ORTHO05D004518 4.4e-36 157.5 763 28.4
Actinidia24929 Actinidia chinensis HOM05D003827 ORTHO05D004518 1.1e-34 152.9 821 30.5
Nn3g19462 Nelumbo nucifera HOM05D003827 ORTHO05D004518 1.1e-34 152.9 360 38.1
DCAR_002692 Daucus carota HOM05D003827 ORTHO05D004518 1.8e-34 152.1 784 28.4
HanXRQChr06g0177881 Helianthus annuus HOM05D003827 ORTHO05D004518 1.8e-34 152.1 801 28.0
vmacro14883 Vaccinium macrocarpon HOM05D003827 ORTHO05D004518 5.4e-34 150.6 777 27.5
Ca_08637_v3 Cicer arietinum L. HOM05D003827 ORTHO05D004518 7.0e-34 150.2 758 28.0
HPP92_020343 Vanilla planifolia HOM05D003827 ORTHO05D004518 2.0e-33 148.7 614 32.9
Actinidia21149 Actinidia chinensis HOM05D003827 ORTHO05D004518 3.5e-33 147.9 750 28.9
Aa31LG10G17280 Aethionema arabicum HOM05D003827 ORTHO05D004518 4.5e-33 147.5 820 27.8
Sp5g00120 Schrenkiella parvula HOM05D003827 ORTHO05D004518 5.9e-33 147.1 742 28.2
CDE06G2016 Ceratophyllum demersum HOM05D003827 ORTHO05D004518 1.7e-32 145.6 773 28.2
Dinv34555 Davidia involucrata HOM05D003827 ORTHO05D004518 1.1e-31 142.9 663 29.7
Gohir.A08G062500 Gossypium hirsutum HOM05D003827 ORTHO05D004518 4.3e-31 141.0 740 28.2
ATR0665G375 Amborella trichopoda HOM05D003827 ORTHO05D004518 7.3e-31 140.2 610 32.0
AL5G46290 Arabidopsis lyrata HOM05D003827 ORTHO05D004518 4.7e-30 137.5 749 28.4
DCAR_005854 Daucus carota HOM05D003827 ORTHO05D004518 2.3e-29 135.2 709 28.6
AT3G63430 Arabidopsis thaliana HOM05D003827 ORTHO05D004518 5.2e-29 134.0 737 26.7
Gohir.D08G071700 Gossypium hirsutum HOM05D003827 ORTHO05D004518 8.9e-29 133.3 736 27.7
TPR.G19092 Trifolium pratense HOM05D003827 ORTHO05D004518 1.5e-28 132.5 753 26.4
C08p38040 Brassica napus HOM05D003827 ORTHO05D004518 2.6e-28 131.7 740 28.0
A09p55100 Brassica napus HOM05D003827 ORTHO05D004518 3.4e-28 131.3 737 29.2
Medtr7g095890 Medicago truncatula HOM05D003827 ORTHO05D004518 3.4e-28 131.3 767 27.4
BraA09t40917Z Brassica rapa HOM05D003827 ORTHO05D004518 5.8e-28 130.6 739 28.8
BcaC07g40810 Brassica carinata HOM05D003827 ORTHO05D004518 9.8e-28 129.8 744 28.2
Carub.0005s3005 Capsella rubella HOM05D003827 ORTHO05D004518 6.4e-27 127.1 733 26.3
Lsat_1_v5_gn_9_7940 Lactuca sativa HOM05D003827 ORTHO05D004518 6.4e-27 127.1 797 26.2
BolC8t51378H Brassica oleracea HOM05D003827 ORTHO05D004518 8.3e-27 126.7 742 27.6
SHI10022 Sapria himalayana HOM05D003827 ORTHO05D004518 4.1e-26 124.4 796 27.4
BcaC07g42691 Brassica carinata HOM05D003827 ORTHO05D004518 9.2e-26 123.2 728 27.5
Lalb_Chr06g0162731 Lupinus albus HOM05D003827 ORTHO05D004518 3.0e-24 118.2 748 26.1
Oeu011513.1 Olea europaea HOM05D003827 ORTHO05D004518 5.6e-23 114.0 269 39.0
Gorai.001G241900 Gossypium raimondii HOM05D003827 ORTHO05D004518 1.6e-22 112.5 540 28.9
Thhalv10005863m.g Eutrema salsugineum HOM05D003827 ORTHO05D004518 9.8e-20 103.2 735 27.6
Ah.11g050100 Amaranthus hybridus HOM05D003827 ORTHO05D004518 2.9e-19 101.7 278 31.7
Oeu002272.1 Olea europaea HOM05D003827 ORTHO05D004518 1.4e-18 99.4 309 32.4
TPR.G39068 Trifolium pratense HOM05D003827 ORTHO05D000002 4.1e-18 97.8 290 34.8
HanXRQChr15g0466901 Helianthus annuus HOM05D003827 ORTHO05D004518 2.5e-15 88.6 762 24.5
TPR.G39105 Trifolium pratense HOM05D003827 ORTHO05D004518 1.2e-14 86.3 275 29.5
Gohir.D07G213901 Gossypium hirsutum HOM05D003827 ORTHO05D004518 1.3e-11 76.3 298 28.2
Nn1g00777 Nelumbo nucifera HOM05D003827 ORTHO05D004518 1.9e-10 72.4 190 36.8
ECA247G1386 Erigeron canadensis HOM05D003827 ORTHO05D004518 2.3e-08 65.5 720 22.6
HanXRQChr10g0282171 Helianthus annuus HOM05D003827 ORTHO05D004518 3.0e-08 65.1 396 28.8
MBI19_g13319_MAGBIO Magnolia biondii HOM05D001693 ORTHO05D001588 1.9e-07 62.4 265 28.3
arahy.Tifrunner.gnm1.ann1.HRE7NK Arachis hypogaea HOM05D001693 ORTHO05D001588 3.3e-07 61.6 225 30.2
Sopen03g034070 Solanum pennellii HOM05D001693 ORTHO05D001588 3.3e-07 61.6 224 32.6
CsaV3_1G006080 Cucumis sativus L. HOM05D001693 ORTHO05D001588 5.6e-07 60.8 231 31.2
EL10Ac5g11155 Beta vulgaris HOM05D001693 ORTHO05D001588 7.3e-07 60.5 213 31.9
MELO3C002039.2 Cucumis melo HOM05D001693 ORTHO05D001588 9.6e-07 60.1 231 31.2
Os07g0109400 Oryza sativa ssp. japonica HOM05D001693 ORTHO05D001588 9.6e-07 60.1 284 28.5
PGR083G1685 Punica granatum HOM05D001693 ORTHO05D001588 9.6e-07 60.1 204 32.8
Rhsim12G0149000 Rhododendron simsii HOM05D001693 ORTHO05D001588 1.2e-06 59.7 214 29.9
arahy.Tifrunner.gnm1.ann1.ZRKH1E Arachis hypogaea HOM05D001693 ORTHO05D001588 1.6e-06 59.3 225 29.8
SEGI_41162 Sequoiadendron giganteum HOM05D001693 ORTHO05D001588 1.6e-06 59.3 273 29.7
Nn5g28224 Nelumbo nucifera HOM05D003827 ORTHO05D004518 2.8e-06 58.5 190 36.8
Phvul.009G202300 Phaseolus vulgaris HOM05D001693 ORTHO05D001588 3.6e-06 58.2 227 30.0
MELO3C017231.2 Cucumis melo HOM05D001693 ORTHO05D001588 4.7e-06 57.8 214 30.4
Lalb_Chr12g0197281 Lupinus albus HOM05D001693 ORTHO05D001588 4.7e-06 57.8 225 29.8
Nitab4.5_0001485g0020 Nicotiana tabacum HOM05D001693 ORTHO05D001588 6.2e-06 57.4 236 26.7
PGSC0003DMG400024535 Solanum tuberosum HOM05D001693 ORTHO05D001588 6.2e-06 57.4 221 32.6
Potri.015G058900 Populus trichocarpa HOM05D001693 ORTHO05D001588 8.1e-06 57.0 230 27.8


User provided reference genes

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