Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0579700 Oryza sativa ssp. japonica HOM05D002310 ORTHO05D002326 9.4e-114 414.1 302 100.0
Zm00001eb200440 Zea mays HOM05D002310 ORTHO05D002326 1.6e-36 157.5 181 56.4
PGR004G1373 Punica granatum HOM05D002310 ORTHO05D002326 1.4e-13 81.3 192 32.8
Oeu011619.2 Olea europaea HOM05D002310 ORTHO05D002326 2.3e-11 73.9 170 34.7
MSTRG.4031 Avicennia marina HOM05D002310 ORTHO05D002326 8.7e-11 72.0 203 34.0
Actinidia40145 Actinidia chinensis HOM05D002310 ORTHO05D002326 1.9e-10 70.9 183 33.9
Actinidia23510 Actinidia chinensis HOM05D002310 ORTHO05D002326 2.5e-10 70.5 232 29.7
Solyc09g076040.3 Solanum lycopersicum HOM05D002310 ORTHO05D002326 5.7e-10 69.3 198 30.8
Sopen09g030870 Solanum pennellii HOM05D002310 ORTHO05D002326 5.7e-10 69.3 198 30.8
BcaB06g26348 Brassica carinata HOM05D002310 ORTHO05D002326 2.8e-09 67.0 199 30.2
Potri.010G087400 Populus trichocarpa HOM05D002310 ORTHO05D002326 3.7e-09 66.6 196 30.1
arahy.Tifrunner.gnm1.ann1.5P4QKH Arachis hypogaea HOM05D002310 ORTHO05D002326 4.8e-09 66.2 190 30.0
Peaxi162Scf00092g01019 Petunia axillaris HOM05D002310 ORTHO05D002326 4.8e-09 66.2 200 31.0
BraA05t21506Z Brassica rapa HOM05D002310 ORTHO05D002326 6.3e-09 65.9 190 30.0
Manes.03G178600 Manihot esculenta HOM05D002310 ORTHO05D002326 6.3e-09 65.9 223 28.7
TWI09G0856 Tripterygium wilfordii HOM05D002310 ORTHO05D002326 8.2e-09 65.5 205 28.8
Atru.ctg752_3.77 Acer truncatum HOM05D002310 ORTHO05D002326 1.1e-08 65.1 250 29.2
AT3G22430 Arabidopsis thaliana HOM05D002310 ORTHO05D002326 1.1e-08 65.1 215 31.6
ECA240G3014 Erigeron canadensis HOM05D002310 ORTHO05D002326 1.1e-08 65.1 187 27.8
COL.COLO4_21477 Corchorus olitorius HOM05D002310 ORTHO05D002326 1.4e-08 64.7 192 31.8
PGSC0003DMG400030084 Solanum tuberosum HOM05D002310 ORTHO05D002326 1.4e-08 64.7 198 31.3
CiPaw.02G097300 Carya illinoinensis HOM05D002310 ORTHO05D002326 2.4e-08 63.9 207 30.4
BcaC05g28069 Brassica carinata HOM05D002310 ORTHO05D002326 3.1e-08 63.5 199 29.6
C05p40910 Brassica napus HOM05D002310 ORTHO05D002326 3.1e-08 63.5 199 29.6
BolC5t32833H Brassica oleracea HOM05D002310 ORTHO05D002326 3.1e-08 63.5 199 29.6
CiPaw.01G166000 Carya illinoinensis HOM05D002310 ORTHO05D002326 3.1e-08 63.5 208 29.3
Potri.008G152900 Populus trichocarpa HOM05D002310 ORTHO05D002326 3.1e-08 63.5 201 27.4
SGA_v2.0_scaffold257G45713 Striga asiatica HOM05D002310 ORTHO05D002326 4.1e-08 63.2 199 30.2
A05p26290 Brassica napus HOM05D002310 ORTHO05D002326 5.3e-08 62.8 190 29.5
Haze_00900 Corylus avellana HOM05D002310 ORTHO05D002326 5.3e-08 62.8 237 27.8
Duzib151G0125 Durio zibethinus HOM05D002310 ORTHO05D002326 6.9e-08 62.4 204 29.9
Cfa015645 Carpinus fangiana HOM05D002310 ORTHO05D002326 9.0e-08 62.0 218 28.4
Glyma.20G146000 Glycine max HOM05D002310 ORTHO05D002326 1.2e-07 61.6 211 30.3
Gorai.006G068300 Gossypium raimondii HOM05D002310 ORTHO05D002326 1.2e-07 61.6 193 31.1
HPP92_024362 Vanilla planifolia HOM05D002310 ORTHO05D002326 1.5e-07 61.2 239 28.9
Rhsim04G0202200 Rhododendron simsii HOM05D002310 ORTHO05D002326 2.0e-07 60.8 227 28.6
Cc03_g03780 Coffea canephora HOM05D002310 ORTHO05D002326 2.6e-07 60.5 195 29.2
Gohir.A09G056100 Gossypium hirsutum HOM05D002310 ORTHO05D002326 2.6e-07 60.5 194 30.4
Lj5g0003431 Lotus japonicus HOM05D002310 ORTHO05D002326 2.6e-07 60.5 195 30.3
Sp3g20200 Schrenkiella parvula HOM05D002310 ORTHO05D002326 2.6e-07 60.5 210 29.0
Lsat_1_v5_gn_7_67261 Lactuca sativa HOM05D002310 ORTHO05D002326 3.4e-07 60.1 204 27.9
THA.LOC104808546 Tarenaya hassleriana HOM05D002310 ORTHO05D002326 3.4e-07 60.1 206 29.6
arahy.Tifrunner.gnm1.ann1.Q8TT5G Arachis hypogaea HOM05D002310 ORTHO05D002326 4.5e-07 59.7 184 29.3
Migut.G00339 Erythranthe guttata HOM05D002310 ORTHO05D002326 4.5e-07 59.7 202 29.2
GSVIVG01017976001 Vitis vinifera HOM05D002310 ORTHO05D002326 4.5e-07 59.7 210 27.6
SGA_v2.0_scaffold39G15233 Striga asiatica HOM05D002310 ORTHO05D002326 5.9e-07 59.3 205 28.8
Eucgr.H03481 Eucalyptus grandis HOM05D002310 ORTHO05D002326 7.7e-07 58.9 228 29.8
Oeu020078.1 Olea europaea HOM05D002310 ORTHO05D002326 7.7e-07 58.9 220 30.9
Psat6g207480 Pisum sativum HOM05D002310 ORTHO05D002326 7.7e-07 58.9 201 28.9
Sc15g0003290 Simmondsia chinensis HOM05D002310 ORTHO05D002326 7.7e-07 58.9 210 29.5
FAN22G1532 Fragaria x ananassa HOM05D002310 ORTHO05D002326 1.0e-06 58.5 217 28.6
SalBow2G1797 Salvia bowleyana HOM05D002310 ORTHO05D002326 1.0e-06 58.5 200 30.5
CARHR098340 Cardamine hirsuta HOM05D002310 ORTHO05D002326 1.7e-06 57.8 216 30.6
Thhalv10020450m.g Eutrema salsugineum HOM05D002310 ORTHO05D002326 1.7e-06 57.8 221 29.0
Lj6A608G62 Lonicera japonica HOM05D002310 ORTHO05D002326 1.7e-06 57.8 194 29.4
Sabra10G0055300 Salix brachista HOM05D002310 ORTHO05D002326 2.2e-06 57.4 193 28.5
CSS0035785 Camellia sinensis var. sinensis HOM05D002310 ORTHO05D002326 2.9e-06 57.0 259 25.5
Carub.0003s2261 Capsella rubella HOM05D002310 ORTHO05D002326 2.9e-06 57.0 185 29.7
Sabra08G0116500 Salix brachista HOM05D002310 ORTHO05D002326 2.9e-06 57.0 196 27.0
AL3G36740 Arabidopsis lyrata HOM05D002310 ORTHO05D002326 3.8e-06 56.6 176 31.8
TWI73G1015 Tripterygium wilfordii HOM05D002310 ORTHO05D002326 5.0e-06 56.2 194 29.4
HanXRQChr05g0145901 Helianthus annuus HOM05D002310 ORTHO05D002326 8.5e-06 55.5 201 28.4


User provided reference genes

Program Settings