Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0575200 Oryza sativa ssp. japonica HOM05D003229 ORTHO05D003835 7.2e-81 303.9 159 100.0
Zm00001eb114310 Zea mays HOM05D003229 ORTHO05D003835 1.6e-32 143.3 86 75.6
Zm00001eb200300 Zea mays HOM05D003229 ORTHO05D003835 2.1e-32 142.9 85 74.1
Phvul.006G006900 Phaseolus vulgaris HOM05D003229 ORTHO05D003835 1.3e-26 123.6 132 56.8
Cpa.g.sc103.35 Carica papaya HOM05D003229 ORTHO05D003835 3.3e-25 119.0 153 52.9
Gohir.A13G086615 Gossypium hirsutum HOM05D003229 ORTHO05D003835 2.8e-24 115.9 139 54.0
Gorai.010G139700 Gossypium raimondii HOM05D003229 ORTHO05D003835 3.6e-24 115.5 139 53.2
Gohir.D13G092701 Gossypium hirsutum HOM05D003229 ORTHO05D003835 1.1e-23 114.0 139 52.5
VMungo0540G0117 Vigna mungo HOM05D003229 ORTHO05D003835 1.8e-23 113.2 141 52.5
PSO384G4356 Papaver somniferum HOM05D003229 ORTHO05D003835 3.1e-23 112.5 139 51.1
Atru.chr3.3041 Acer truncatum HOM05D003229 ORTHO05D003835 4.0e-23 112.1 133 52.6
Glyma.13G028000 Glycine max HOM05D003229 ORTHO05D003835 4.0e-23 112.1 151 50.3
Peaxi162Scf01091g00018 Petunia axillaris HOM05D003229 ORTHO05D003835 5.2e-23 111.7 126 50.8
PSO339G4047 Papaver somniferum HOM05D003229 ORTHO05D003835 8.9e-23 110.9 138 50.7
QL01p018824 Quercus lobata HOM05D003229 ORTHO05D003835 1.5e-22 110.2 147 49.0
Dinv32144 Davidia involucrata HOM05D003229 ORTHO05D003835 2.6e-22 109.4 135 54.8
PGSC0003DMG400002995 Solanum tuberosum HOM05D003229 ORTHO05D003835 5.8e-22 108.2 128 45.3
Migut.N02427 Erythranthe guttata HOM05D003229 ORTHO05D003835 9.9e-22 107.5 161 46.6
Sc21g0006640 Simmondsia chinensis HOM05D003229 ORTHO05D003835 9.9e-22 107.5 150 48.0
Solyc11g071690.3 Solanum lycopersicum HOM05D003229 ORTHO05D003835 9.9e-22 107.5 128 52.3
Sopen11g029360 Solanum pennellii HOM05D003229 ORTHO05D003835 9.9e-22 107.5 128 52.3
Lj2C839T18 Lonicera japonica HOM05D003229 ORTHO05D003835 1.3e-21 107.1 152 47.4
SGA_v2.0_scaffold16G07545 Striga asiatica HOM05D003229 ORTHO05D003835 2.2e-21 106.3 149 48.3
GSVIVG01037516001 Vitis vinifera HOM05D003229 ORTHO05D003835 2.9e-21 105.9 125 55.2
Cc01_g08150 Coffea canephora HOM05D003229 ORTHO05D003835 3.8e-21 105.5 161 43.5
Ciclev10028298m.g Citrus clementina HOM05D003229 ORTHO05D003835 4.9e-21 105.1 153 37.9
Lalb_Chr17g0347381 Lupinus albus HOM05D003229 ORTHO05D003835 4.9e-21 105.1 146 49.3
ECA238G1805 Erigeron canadensis HOM05D000006 ORTHO05D000001 6.4e-21 104.8 125 54.4
Oeu048812.1 Olea europaea HOM05D003229 ORTHO05D003835 6.4e-21 104.8 127 52.0
Oeu048813.5 Olea europaea HOM05D003229 ORTHO05D003835 6.4e-21 104.8 127 52.0
MSTRG.12405 Avicennia marina HOM05D003229 ORTHO05D003835 1.1e-20 104.0 143 44.8
Sed0019248 Sechium edule HOM05D003229 ORTHO05D003835 1.4e-20 103.6 142 50.0
MELO3C017380.2 Cucumis melo HOM05D003229 ORTHO05D003835 1.9e-20 103.2 142 40.1
PGR119G2320 Punica granatum HOM05D003229 ORTHO05D003835 1.9e-20 103.2 139 48.9
TWI31G0893 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 1.9e-20 103.2 151 49.7
SGA_v2.0_scaffold82G26251 Striga asiatica HOM05D003229 ORTHO05D003835 2.4e-20 102.8 128 50.8
CSS0043544 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 3.2e-20 102.4 147 47.6
Nn2g14458 Nelumbo nucifera HOM05D003229 ORTHO05D003835 5.4e-20 101.7 145 49.0
HanXRQChr05g0137001 Helianthus annuus HOM05D003229 ORTHO05D003835 7.1e-20 101.3 125 54.4
TWI79G1121 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 7.1e-20 101.3 151 49.0
Glyma.20G055200 Glycine max HOM05D003229 ORTHO05D003835 2.1e-19 99.8 152 45.4
Cfa010230 Carpinus fangiana HOM05D003229 ORTHO05D003835 2.7e-19 99.4 157 47.1
DCAR_012260 Daucus carota HOM05D003229 ORTHO05D003835 2.7e-19 99.4 130 50.8
Eucgr.J00598 Eucalyptus grandis HOM05D003229 ORTHO05D003835 3.5e-19 99.0 142 47.9
Hund20968 Selenicereus undatus HOM05D003229 ORTHO05D003835 3.5e-19 99.0 140 47.9
CiPaw.13G105300 Carya illinoinensis HOM05D003229 ORTHO05D003835 6.0e-19 98.2 128 50.0
Duzib177G0022 Durio zibethinus HOM05D003229 ORTHO05D003835 6.0e-19 98.2 143 49.0
Lsat_1_v5_gn_0_39260 Lactuca sativa HOM05D003229 ORTHO05D003835 6.0e-19 98.2 124 50.0
ECA240G3284 Erigeron canadensis HOM05D003229 ORTHO05D003835 7.8e-19 97.8 135 45.9
Thecc.05G214900 Theobroma cacao HOM05D003229 ORTHO05D003835 7.8e-19 97.8 133 49.6
arahy.Tifrunner.gnm1.ann1.B3GIUW Arachis hypogaea HOM05D003229 ORTHO05D003835 1.3e-18 97.1 133 49.6
Sopen06g030210 Solanum pennellii HOM05D003229 ORTHO05D003835 1.3e-18 97.1 158 44.3
A06p22470 Brassica napus HOM05D003229 ORTHO05D003835 3.9e-18 95.5 128 49.2
A06p22530 Brassica napus HOM05D003229 ORTHO05D003835 3.9e-18 95.5 128 49.2
Hma1.2p1_0218F.1_g092270 Hydrangea macrophylla HOM05D003229 ORTHO05D003835 3.9e-18 95.5 128 49.2
Peaxi162Scf00355g00005 Petunia axillaris HOM05D003229 ORTHO05D003835 3.9e-18 95.5 157 45.9
THA.LOC104810972 Tarenaya hassleriana HOM05D003229 ORTHO05D003835 6.6e-18 94.7 126 49.2
TWI74G0877 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 6.6e-18 94.7 126 35.7
Lj6g0007817 Lotus japonicus HOM05D003229 ORTHO05D003835 8.7e-18 94.4 154 46.1
C03p68590 Brassica napus HOM05D003229 ORTHO05D003835 1.1e-17 94.0 128 48.4
BolC3t19117H Brassica oleracea HOM05D003229 ORTHO05D003835 1.1e-17 94.0 128 48.4
BraA06t25329Z Brassica rapa HOM05D003229 ORTHO05D003835 1.1e-17 94.0 128 48.4
Nitab4.5_0010116g0010 Nicotiana tabacum HOM05D003229 ORTHO05D003835 1.1e-17 94.0 150 35.3
PGSC0003DMG400005910 Solanum tuberosum HOM05D003229 ORTHO05D003835 1.1e-17 94.0 127 47.2
Manes.04G063962 Manihot esculenta HOM05D003229 ORTHO05D003835 1.5e-17 93.6 145 38.6
Ah.08g222380 Amaranthus hybridus HOM05D003229 ORTHO05D003835 1.9e-17 93.2 147 42.2
RcHm_v2.0_Chr6g0255381 Rosa chinensis HOM05D003229 ORTHO05D003835 1.9e-17 93.2 63 61.9
Solyc06g073810.4 Solanum lycopersicum HOM05D003229 ORTHO05D003835 1.9e-17 93.2 162 43.2
Haze_23616 Corylus avellana HOM05D003229 ORTHO05D003835 3.3e-17 92.4 154 46.1
CDE05G3619 Ceratophyllum demersum HOM05D003229 ORTHO05D003835 4.3e-17 92.0 127 48.8
FvH4_2g05241 Fragaria vesca HOM05D003229 ORTHO05D003835 5.6e-17 91.7 64 59.4
FAN15G3758 Fragaria x ananassa HOM05D003229 ORTHO05D003835 5.6e-17 91.7 64 59.4
FAN20G2341 Fragaria x ananassa HOM05D003229 ORTHO05D003835 5.6e-17 91.7 64 59.4
Oeu058180.2 Olea europaea HOM05D003229 ORTHO05D003835 5.6e-17 91.7 143 43.4
Actinidia12901 Actinidia chinensis HOM05D003229 ORTHO05D003835 7.3e-17 91.3 63 60.3
MD03G1161300 Malus domestica HOM05D003229 ORTHO05D003835 7.3e-17 91.3 66 57.6
Sed0028007 Sechium edule HOM05D003229 ORTHO05D003835 7.3e-17 91.3 143 40.6
FAN24G0320 Fragaria x ananassa HOM05D003229 ORTHO05D003835 1.3e-16 90.5 64 57.8
FAN27G0679 Fragaria x ananassa HOM05D003229 ORTHO05D003835 1.6e-16 90.1 64 57.8
Sp5g17570 Schrenkiella parvula HOM05D003229 ORTHO05D003835 2.1e-16 89.7 149 40.3
CsaV3_1G004530 Cucumis sativus L. HOM05D003229 ORTHO05D003835 3.6e-16 89.0 154 44.8
EL10Ac7g16254 Beta vulgaris HOM05D003229 ORTHO05D003835 4.8e-16 88.6 135 47.4
CANSAT54G2724 Cannabis sativa HOM05D003229 ORTHO05D003835 6.2e-16 88.2 125 48.8
Ciclev10011928m.g Citrus clementina HOM05D003229 ORTHO05D003835 6.2e-16 88.2 124 35.5
Gohir.A13G089500 Gossypium hirsutum HOM05D003229 ORTHO05D003835 6.2e-16 88.2 112 36.6
GSVIVG01022494001 Vitis vinifera HOM05D003229 ORTHO05D003835 6.2e-16 88.2 157 35.7
AL5G21420 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 8.1e-16 87.8 126 46.8
Manes.11G104500 Manihot esculenta HOM05D003229 ORTHO05D003835 8.1e-16 87.8 146 41.1
TPR.G15596 Trifolium pratense HOM05D003229 ORTHO05D003835 8.1e-16 87.8 147 45.6
CANSAT35G0213 Cannabis sativa HOM05D003229 ORTHO05D003835 1.1e-15 87.4 68 55.9
CARHR287360 Cardamine hirsuta HOM05D003229 ORTHO05D003835 1.1e-15 87.4 152 40.1
Ca_16267_v3 Cicer arietinum L. HOM05D003229 ORTHO05D009053 1.1e-15 87.4 153 41.8
Duzib128G0535 Durio zibethinus HOM05D003229 ORTHO05D003835 1.1e-15 87.4 75 53.3
Sabra09G0121900 Salix brachista HOM05D003229 ORTHO05D003835 1.1e-15 87.4 137 46.7
CSS0045009 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 1.4e-15 87.0 135 47.4
LjContig00564g0024504 Lotus japonicus HOM05D003229 ORTHO05D003835 1.8e-15 86.7 128 46.1
Lsat_1_v5_gn_3_111681 Lactuca sativa HOM05D003229 ORTHO05D003835 2.4e-15 86.3 60 58.3
Potri.016G063800 Populus trichocarpa HOM05D003229 ORTHO05D003835 2.4e-15 86.3 148 45.3
Rhsim01G0198100 Rhododendron simsii HOM05D003229 ORTHO05D003835 2.4e-15 86.3 140 45.0
Rhsim13G0199400 Rhododendron simsii HOM05D003229 ORTHO05D003835 2.4e-15 86.3 64 54.7
ATR0697G070 Amborella trichopoda HOM05D003229 ORTHO05D003835 3.1e-15 85.9 124 50.0
Ca_06127_v3 Cicer arietinum L. HOM05D003229 ORTHO05D003835 3.1e-15 85.9 147 35.4
Atru.chr8.1245 Acer truncatum HOM05D003229 ORTHO05D003835 4.0e-15 85.5 124 35.5
Lalb_Chr13g0294131 Lupinus albus HOM05D003229 ORTHO05D003835 5.3e-15 85.1 143 47.6
Thhalv10019590m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 9.0e-15 84.3 125 44.8
CSS0010675 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 1.2e-14 84.0 83 49.4
Psat2g023800 Pisum sativum HOM05D003229 ORTHO05D003835 1.2e-14 84.0 130 42.3
Carub.0005s0931 Capsella rubella HOM05D003229 ORTHO05D003835 1.5e-14 83.6 132 41.7
Carub.0005s0918 Capsella rubella HOM05D003229 ORTHO05D003835 2.0e-14 83.2 152 35.5
AUR62020197 Chenopodium quinoa HOM05D003229 ORTHO05D003835 2.0e-14 83.2 67 52.2
Thhalv10020505m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 2.0e-14 83.2 127 44.9
vmacro14302 Vaccinium macrocarpon HOM05D003229 ORTHO05D003835 2.6e-14 82.8 122 50.0
TPR.G13300 Trifolium pratense HOM05D003229 ORTHO05D003835 3.4e-14 82.4 132 43.2
AL5G21520 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 4.4e-14 82.0 126 43.7
DCAR_022907 Daucus carota HOM05D003633 ORTHO05D004245 4.4e-14 82.0 74 48.6
AUR62001585 Chenopodium quinoa HOM05D003229 ORTHO05D003835 5.8e-14 81.6 82 43.9
CDE01G0204 Ceratophyllum demersum HOM05D003229 ORTHO05D003835 9.9e-14 80.9 145 42.8
Gohir.D13G092751 Gossypium hirsutum HOM05D003229 ORTHO05D003835 9.9e-14 80.9 143 42.7
AT3G43590 Arabidopsis thaliana HOM05D003229 ORTHO05D003835 1.3e-13 80.5 143 39.2
Potri.004G193500 Populus trichocarpa HOM05D003229 ORTHO05D003835 1.3e-13 80.5 61 55.7
Potri.009G155500 Populus trichocarpa HOM05D003229 ORTHO05D003835 1.3e-13 80.5 138 46.4
Aa31LG4G13390 Aethionema arabicum HOM05D003229 ORTHO05D003835 1.7e-13 80.1 127 44.9
arahy.Tifrunner.gnm1.ann1.M286MP Arachis hypogaea HOM05D003229 ORTHO05D003835 1.7e-13 80.1 133 42.1
Sabra04G0131600 Salix brachista HOM05D003229 ORTHO05D003835 1.7e-13 80.1 126 46.8
Gorai.010G139800 Gossypium raimondii HOM05D003229 ORTHO05D003835 2.2e-13 79.7 137 43.8
TAR636G2352 Trochodendron aralioides HOM05D003229 ORTHO05D003835 3.8e-13 79.0 188 37.2
Sabra04G0131800 Salix brachista HOM05D003229 ORTHO05D003835 1.9e-12 76.6 57 56.1
THA.LOC104799740 Tarenaya hassleriana HOM05D003229 ORTHO05D003835 2.4e-12 76.3 164 30.5
QL08p055973 Quercus lobata HOM05D006567 ORTHO05D015939 3.2e-12 75.9 86 44.2
CARHR267130 Cardamine hirsuta HOM05D003229 ORTHO05D003835 4.2e-12 75.5 127 43.3
CBR_g8477 Chara braunii HOM05D003229 ORTHO05D000407 4.2e-12 75.5 159 36.5
HanXRQChr03g0089231 Helianthus annuus HOM05D003229 ORTHO05D003835 4.2e-12 75.5 130 31.5
COL.COLO4_29455 Corchorus olitorius HOM05D003229 ORTHO05D003835 9.3e-12 74.3 122 33.6
SEGI_34455 Sequoiadendron giganteum HOM05D003229 ORTHO05D003835 1.0e-10 70.9 126 40.5
HPP92_026334 Vanilla planifolia HOM05D003229 ORTHO05D003835 1.3e-10 70.5 146 41.1
Sopen01g025320 Solanum pennellii HOM05D000006 ORTHO05D000001 1.7e-10 70.1 123 43.1
Hma1.2p1_0127F.1_g059620 Hydrangea macrophylla HOM05D003229 ORTHO05D003835 2.3e-10 69.7 118 44.1
MBI11_g25050_MAGBIO Magnolia biondii HOM05D003229 ORTHO05D003835 5.1e-10 68.6 46 58.7
Thecc.05G181700 Theobroma cacao HOM05D003229 ORTHO05D003835 5.1e-10 68.6 138 30.4
PGSC0003DMG401021491 Solanum tuberosum HOM05D024157 ORTHO05D025896 8.7e-10 67.8 58 50.0
AagrBONN_evm.TU.Sc2ySwM_368.3251 Anthoceros agrestis HOM05D003229 ORTHO05D003835 1.1e-09 67.4 71 42.3
Duzib128G1455 Durio zibethinus HOM05D003229 ORTHO05D003835 1.1e-09 67.4 151 28.5
QL02p079790 Quercus lobata HOM05D003229 ORTHO05D003835 1.1e-09 67.4 82 41.5
Aqoxy1G00567 Aquilegia oxysepala HOM05D003229 ORTHO05D003835 3.3e-09 65.9 108 37.0
Gohir.D04G093700 Gossypium hirsutum HOM05D003229 ORTHO05D003835 9.6e-09 64.3 115 29.6
Pp3c1_33300 Physcomitrium patens HOM05D003229 ORTHO05D003835 2.1e-08 63.2 81 35.8
MSTRG.26568 Avicennia marina HOM05D003229 ORTHO05D003835 2.8e-08 62.8 146 34.2
Gorai.009G396300 Gossypium raimondii HOM05D003229 ORTHO05D003835 8.1e-08 61.2 115 28.7
ClCG06G014150 Citrullus lanatus HOM05D003229 ORTHO05D003835 3.1e-07 59.3 50 54.0
Solyc01g056750.1 Solanum lycopersicum HOM05D003229 ORTHO05D003835 3.1e-07 59.3 58 44.8
AT3G43490 Arabidopsis thaliana HOM05D003229 ORTHO05D003835 4.0e-07 58.9 82 29.3
Pp3c2_2680 Physcomitrium patens HOM05D003229 ORTHO05D003835 1.2e-06 57.4 46 47.8
Os11g0549680 Oryza sativa ssp. japonica HOM05D003229 ORTHO05D003835 2.0e-06 56.6 42 59.5
Mapoly0019s0115 Marchantia polymorpha HOM05D003229 ORTHO05D003835 2.6e-06 56.2 46 47.8
Dinv25091 Davidia involucrata HOM05D003229 ORTHO05D003835 9.9e-06 54.3 48 47.9


User provided reference genes

Program Settings