Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0574725 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 9.5e-77 290.0 140 100.0
Os11g0582700 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 3.9e-46 188.3 123 69.1
Zm00001eb069560 Zea mays HOM05D000151 ORTHO05D000074 3.9e-46 188.3 129 69.0
Zm00001eb069750 Zea mays HOM05D000151 ORTHO05D000074 1.1e-45 186.8 128 68.8
Zm00001eb069880 Zea mays HOM05D000151 ORTHO05D000074 1.1e-45 186.8 128 68.8
Zm00001eb069960 Zea mays HOM05D000151 ORTHO05D000074 1.1e-45 186.8 128 68.8
Zm00001eb070040 Zea mays HOM05D000151 ORTHO05D000074 1.1e-45 186.8 128 68.8
Zm00001eb069540 Zea mays HOM05D000151 ORTHO05D000074 2.5e-45 185.7 128 68.0
Zm00001eb069820 Zea mays HOM05D000151 ORTHO05D000074 1.6e-44 183.0 128 68.0
Os11g0584100 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 3.6e-44 181.8 120 70.0
Zm00001eb070030 Zea mays HOM05D000151 ORTHO05D000074 4.7e-44 181.4 128 68.0
Zm00001eb049550 Zea mays HOM05D000151 ORTHO05D000074 4.0e-43 178.3 113 73.5
Os03g0720400 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 5.2e-43 177.9 123 65.0
Zm00001eb049440 Zea mays HOM05D000151 ORTHO05D000074 3.4e-42 175.3 113 72.6
Zm00001eb049520 Zea mays HOM05D000151 ORTHO05D000074 3.4e-42 175.3 113 72.6
Zm00001eb049400 Zea mays HOM05D000151 ORTHO05D000074 5.8e-42 174.5 113 72.6
Zm00001eb049420 Zea mays HOM05D000151 ORTHO05D000074 1.7e-41 172.9 113 71.7
Os03g0802100 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 1.1e-40 170.2 130 57.7
Os11g0576400 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 4.6e-39 164.9 106 66.0
Os11g0579600 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 2.8e-36 155.6 103 69.9
Os11g0598000 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 1.4e-35 153.3 103 68.9
Os12g0152200 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 5.4e-32 141.4 119 55.5
Os12g0153400 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 5.4e-32 141.4 119 55.5
Os01g0327900 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 1.1e-27 127.1 111 52.3
Os01g0328300 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 6.9e-27 124.4 111 51.4
Os08g0426100 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 2.9e-25 119.0 117 47.9
Os11g0593700 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 4.2e-24 115.2 111 42.3
Os11g0593100 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 2.1e-23 112.8 112 44.6
Os11g0593600 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 2.3e-22 109.4 121 43.0
Os11g0594400 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 9.0e-19 97.4 133 36.1
Zm00001eb049480 Zea mays HOM05D000151 ORTHO05D000074 7.6e-18 94.4 50 80.0
Os11g0593500 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 2.2e-17 92.8 114 37.7
Os08g0164100 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 8.4e-17 90.9 125 38.4
Os11g0578700 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 9.3e-16 87.4 67 61.2
Zm00001eb272730 Zea mays HOM05D000151 ORTHO05D000074 9.3e-16 87.4 120 40.8
Os06g0707300 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 1.6e-15 86.7 126 38.1
Aqoxy7G03306 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 8.2e-12 74.3 110 33.6
Rhsim03G0212000 Rhododendron simsii HOM05D000002 ORTHO05D001134 3.1e-11 72.4 117 35.9
FvH4_4g05011 Fragaria vesca HOM05D000151 ORTHO05D000074 2.0e-10 69.7 127 32.3
TAR628G1200 Trochodendron aralioides HOM05D000151 ORTHO05D000074 3.4e-10 68.9 116 30.2
Aqoxy6G00558 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 4.5e-10 68.6 121 30.6
MD13G1223500 Malus domestica HOM05D000151 ORTHO05D000074 7.6e-10 67.8 115 30.4
FAN12G3589 Fragaria x ananassa HOM05D000151 ORTHO05D000074 1.0e-09 67.4 127 31.5
Os12g0607800 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 1.0e-09 67.4 119 37.0
QL05p064445 Quercus lobata HOM05D000151 ORTHO05D000074 1.3e-09 67.0 113 31.0
Hma1.2p1_0112F.1_g054880 Hydrangea macrophylla HOM05D000151 ORTHO05D000074 1.7e-09 66.6 128 33.6
MSTRG.25800 Avicennia marina HOM05D000151 ORTHO05D000074 2.9e-09 65.9 112 33.0
CSS0023563 Camellia sinensis var. sinensis HOM05D000151 ORTHO05D000074 2.9e-09 65.9 96 34.4
Dinv28403 Davidia involucrata HOM05D000151 ORTHO05D000074 2.9e-09 65.9 115 33.0
TWI12G0155 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 2.9e-09 65.9 110 31.8
MBI18_g40419_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 5.0e-09 65.1 123 36.6
MBI18_g45941_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 5.0e-09 65.1 111 36.0
Aqoxy2G01390 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 6.5e-09 64.7 100 36.0
Aqoxy6G00559 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 6.5e-09 64.7 119 31.9
Medtr3g114970 Medicago truncatula HOM05D000151 ORTHO05D000074 8.5e-09 64.3 112 33.9
TAR629G1191 Trochodendron aralioides HOM05D000151 ORTHO05D000074 8.5e-09 64.3 125 30.4
Lalb_Chr23g0265911 Lupinus albus HOM05D000151 ORTHO05D000074 1.1e-08 63.9 112 33.9
Eucgr.F03527 Eucalyptus grandis HOM05D000151 ORTHO05D000074 1.4e-08 63.5 122 33.6
FAN20G1383 Fragaria x ananassa HOM05D000151 ORTHO05D000074 1.4e-08 63.5 117 31.6
Os04g0162600 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 1.4e-08 63.5 120 35.8
RcHm_v2.0_Chr6g0303821 Rosa chinensis HOM05D000151 ORTHO05D000074 1.4e-08 63.5 117 31.6
Actinidia06437 Actinidia chinensis HOM05D000151 ORTHO05D000074 1.9e-08 63.2 112 31.2
TAR626G0819 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.9e-08 63.2 126 30.2
Dinv28402 Davidia involucrata HOM05D000151 ORTHO05D000074 2.5e-08 62.8 111 31.5
Thecc.08G054100 Theobroma cacao HOM05D000151 ORTHO05D000074 2.5e-08 62.8 112 31.2
AUR62021140 Chenopodium quinoa HOM05D000151 ORTHO05D000074 3.2e-08 62.4 115 34.8
PGSC0003DMG402009543 Solanum tuberosum HOM05D000151 ORTHO05D000074 3.2e-08 62.4 113 32.7
TWI31G0065 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 3.2e-08 62.4 123 35.0
Aqoxy2G03783 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 4.2e-08 62.0 120 30.0
Aqoxy7G01146 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 4.2e-08 62.0 107 36.4
Cc10_g00920 Coffea canephora HOM05D000151 ORTHO05D000074 4.2e-08 62.0 111 29.7
HanXRQChr14g0428481 Helianthus annuus HOM05D000151 ORTHO05D000074 4.2e-08 62.0 112 28.6
MBI18_g17004_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 4.2e-08 62.0 111 33.3
SalBow6G1188 Salvia bowleyana HOM05D000151 ORTHO05D000074 4.2e-08 62.0 112 32.1
Ciclev10001350m.g Citrus clementina HOM05D000151 ORTHO05D000074 7.2e-08 61.2 115 31.3
Lsat_1_v5_gn_2_5520 Lactuca sativa HOM05D000151 ORTHO05D000074 7.2e-08 61.2 116 31.9
TPR.G38190 Trifolium pratense HOM05D000151 ORTHO05D000074 7.2e-08 61.2 112 33.0
FAN12G2073 Fragaria x ananassa HOM05D004442 ORTHO05D002066 9.3e-08 60.8 131 29.0
FAN17G1775 Fragaria x ananassa HOM05D000151 ORTHO05D000074 9.3e-08 60.8 111 31.5
Aqoxy7G02698 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 1.2e-07 60.5 115 29.6
Cpa.g.sc130.16 Carica papaya HOM05D008753 ORTHO05D010999 1.2e-07 60.5 112 29.5
MD08G1006100 Malus domestica HOM05D000151 ORTHO05D000074 1.2e-07 60.5 112 32.1
MD15G1005500 Malus domestica HOM05D000151 ORTHO05D000074 1.2e-07 60.5 112 32.1
MD16G1228400 Malus domestica HOM05D000151 ORTHO05D000074 1.2e-07 60.5 120 30.8
RcHm_v2.0_Chr1g0339581 Rosa chinensis HOM05D000151 ORTHO05D000074 1.2e-07 60.5 117 32.5
Aqoxy2G03785 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 1.6e-07 60.1 119 33.6
Cfa000098 Carpinus fangiana HOM05D000151 ORTHO05D022277 1.6e-07 60.1 110 35.5
FAN12G0486 Fragaria x ananassa HOM05D000151 ORTHO05D000074 1.6e-07 60.1 137 27.0
FAN22G0114 Fragaria x ananassa HOM05D000151 ORTHO05D000074 1.6e-07 60.1 95 31.6
Os03g0708200 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 1.6e-07 60.1 113 29.2
Peaxi162Scf00119g01111 Petunia axillaris HOM05D000151 ORTHO05D000074 1.6e-07 60.1 111 32.4
Prupe.1G050400 Prunus persica HOM05D000151 ORTHO05D000074 1.6e-07 60.1 129 28.7
Aqoxy5G02614 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 2.1e-07 59.7 119 33.6
MSTRG.1137 Avicennia marina HOM05D000151 ORTHO05D000074 2.1e-07 59.7 115 33.0
QL02p013380 Quercus lobata HOM05D000151 ORTHO05D000074 2.1e-07 59.7 114 29.8
Aqoxy5G02613 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 2.7e-07 59.3 120 30.0
Aqoxy7G03842 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 2.7e-07 59.3 120 31.7
Cfa012527 Carpinus fangiana HOM05D007346 ORTHO05D009044 2.7e-07 59.3 131 30.5
FvH4_4g04480 Fragaria vesca HOM05D000151 ORTHO05D000074 2.7e-07 59.3 116 29.3
Manes.07G051600 Manihot esculenta HOM05D000151 ORTHO05D000074 2.7e-07 59.3 116 28.4
Oeu030066.1 Olea europaea HOM05D000151 ORTHO05D000074 2.7e-07 59.3 112 33.9
Sopen02g036610 Solanum pennellii HOM05D000644 ORTHO05D000504 2.7e-07 59.3 112 31.2
Ca_15450_v3 Cicer arietinum L. HOM05D000151 ORTHO05D000074 3.6e-07 58.9 116 31.9
DCAR_031132 Daucus carota HOM05D000007 ORTHO05D000039 3.6e-07 58.9 115 33.0
MBI11_g05443_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 3.6e-07 58.9 110 31.8
RcHm_v2.0_Chr4g0395201 Rosa chinensis HOM05D000151 ORTHO05D000074 3.6e-07 58.9 115 31.3
Solyc08g006180.4 Solanum lycopersicum HOM05D000151 ORTHO05D000074 3.6e-07 58.9 114 32.5
Glyma.04G019900 Glycine max HOM05D000151 ORTHO05D000074 4.6e-07 58.5 112 33.9
Peaxi162Scf00119g00123 Petunia axillaris HOM05D000151 ORTHO05D000074 4.6e-07 58.5 112 32.1
Peaxi162Scf00119g00124 Petunia axillaris HOM05D000151 ORTHO05D000074 4.6e-07 58.5 112 32.1
Aqoxy7G01778 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 6.1e-07 58.2 116 33.6
Lj2P400T20 Lonicera japonica HOM05D000151 ORTHO05D000074 6.1e-07 58.2 114 31.6
Oeu005193.1 Olea europaea HOM05D000151 ORTHO05D000074 6.1e-07 58.2 113 31.0
Prupe.6G285500 Prunus persica HOM05D000151 ORTHO05D000074 6.1e-07 58.2 80 33.8
Manes.07G048800 Manihot esculenta HOM05D000151 ORTHO05D000074 7.9e-07 57.8 116 30.2
Sopen08g002150 Solanum pennellii HOM05D000151 ORTHO05D000074 7.9e-07 57.8 113 31.9
AUR62012295 Chenopodium quinoa HOM05D000151 ORTHO05D000074 1.0e-06 57.4 115 33.0
Haze_02114 Corylus avellana HOM05D007346 ORTHO05D009044 1.0e-06 57.4 136 27.2
Psat0s4081g0040 Pisum sativum HOM05D000151 ORTHO05D000074 1.0e-06 57.4 114 30.7
TWI56G0047 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 1.0e-06 57.4 111 27.9
Cfa005279 Carpinus fangiana HOM05D007346 ORTHO05D009044 1.3e-06 57.0 136 27.9
CiPaw.08G069900 Carya illinoinensis HOM05D000151 ORTHO05D000074 1.3e-06 57.0 112 26.8
Manes.07G048900 Manihot esculenta HOM05D000151 ORTHO05D000074 1.3e-06 57.0 116 29.3
Dinv28380 Davidia involucrata HOM05D006127 ORTHO05D007465 1.8e-06 56.6 112 32.1
MSTRG.6367 Avicennia marina HOM05D000151 ORTHO05D000074 2.3e-06 56.2 121 27.3
Haze_02115 Corylus avellana HOM05D007346 ORTHO05D009044 2.3e-06 56.2 119 28.6
FAN16G2275 Fragaria x ananassa HOM05D019358 ORTHO05D000074 2.3e-06 56.2 121 36.4
Mapoly0170s0023 Marchantia polymorpha HOM05D002809 ORTHO05D004563 2.3e-06 56.2 119 29.4
Prupe.6G183700 Prunus persica HOM05D000151 ORTHO05D000074 2.3e-06 56.2 115 32.2
CANSAT25G2327 Cannabis sativa HOM05D000151 ORTHO05D000074 3.0e-06 55.8 113 31.0
Cfa005278 Carpinus fangiana HOM05D007346 ORTHO05D009044 3.0e-06 55.8 137 27.7
Cfa005319 Carpinus fangiana HOM05D007346 ORTHO05D009044 3.0e-06 55.8 119 27.7
Ciclev10021245m.g Citrus clementina HOM05D000151 ORTHO05D000074 3.0e-06 55.8 96 37.5
Duzib052G1217 Durio zibethinus HOM05D000151 ORTHO05D000074 3.0e-06 55.8 120 32.5
Manes.05G027500 Manihot esculenta HOM05D003005 ORTHO05D004170 3.0e-06 55.8 114 34.2
Manes.07G048850 Manihot esculenta HOM05D000151 ORTHO05D000074 3.0e-06 55.8 116 29.3
TAR636G0219 Trochodendron aralioides HOM05D000151 ORTHO05D000074 3.0e-06 55.8 119 31.9
TAR636G2580 Trochodendron aralioides HOM05D000151 ORTHO05D000074 3.0e-06 55.8 119 31.9
Haze_02452 Corylus avellana HOM05D000151 ORTHO05D000074 3.9e-06 55.5 57 36.8
Dinv15578 Davidia involucrata HOM05D000151 ORTHO05D000074 3.9e-06 55.5 115 33.9
FAN17G1827 Fragaria x ananassa HOM05D000151 ORTHO05D000074 3.9e-06 55.5 113 28.3
Nn6g31858 Nelumbo nucifera HOM05D000151 ORTHO05D000074 3.9e-06 55.5 112 27.7
Nitab4.5_0003280g0060 Nicotiana tabacum HOM05D000151 ORTHO05D000074 3.9e-06 55.5 112 31.2
PGSC0003DMG400009960 Solanum tuberosum HOM05D000151 ORTHO05D000074 3.9e-06 55.5 112 30.4
COL.COLO4_26063 Corchorus olitorius HOM05D000151 ORTHO05D000074 5.1e-06 55.1 115 29.6
Gorai.010G001100 Gossypium raimondii HOM05D000151 ORTHO05D000074 5.1e-06 55.1 112 26.8
FAN11G0983 Fragaria x ananassa HOM05D019358 ORTHO05D000074 6.7e-06 54.7 121 36.4
Oeu030231.1 Olea europaea HOM05D000151 ORTHO05D000074 6.7e-06 54.7 113 30.1
PGR031G2418 Punica granatum HOM05D000151 ORTHO05D000074 6.7e-06 54.7 115 34.8
Aqoxy4G01250 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 8.7e-06 54.3 106 30.2
Cfa001991 Carpinus fangiana HOM05D000151 ORTHO05D000074 8.7e-06 54.3 49 42.9
Dinv27133 Davidia involucrata HOM05D000151 ORTHO05D000074 8.7e-06 54.3 77 32.5
Potri.002G015700 Populus trichocarpa HOM05D000151 ORTHO05D000074 8.7e-06 54.3 93 31.2
TWI23G1166 Tripterygium wilfordii HOM05D003005 ORTHO05D004170 8.7e-06 54.3 114 34.2


User provided reference genes

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