Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0568633 Oryza sativa ssp. japonica HOM05D005747 ORTHO05D007159 9.8e-17 89.0 43 100.0
Os12g0566400 Oryza sativa ssp. japonica HOM05D005747 ORTHO05D007159 6.4e-16 86.3 42 97.6
Zm00001eb028740 Zea mays HOM05D005747 ORTHO05D007159 5.4e-15 83.2 42 92.9
Zm00001eb136890 Zea mays HOM05D005747 ORTHO05D007159 1.0e-13 79.0 42 85.7
Haze_20552 Corylus avellana HOM05D005747 ORTHO05D007159 6.2e-11 69.7 42 71.4
Actinidia08777 Actinidia chinensis HOM05D005747 ORTHO05D007159 8.1e-11 69.3 42 69.0
CANSAT80G0760 Cannabis sativa HOM05D005747 ORTHO05D007159 1.4e-10 68.6 42 69.0
vmacro07288 Vaccinium macrocarpon HOM05D005747 ORTHO05D007159 1.8e-10 68.2 42 69.0
Actinidia28901 Actinidia chinensis HOM05D005747 ORTHO05D007159 2.3e-10 67.8 42 66.7
Cfa020071 Carpinus fangiana HOM05D005747 ORTHO05D007159 2.3e-10 67.8 42 69.0
Manes.08G009800 Manihot esculenta HOM05D005747 ORTHO05D007159 3.1e-10 67.4 42 69.0
Haze_20124 Corylus avellana HOM05D005747 ORTHO05D007159 5.2e-10 66.6 42 66.7
Prupe.6G232700 Prunus persica HOM05D005747 ORTHO05D007159 1.5e-09 65.1 42 66.7
GSVIVG01025728001 Vitis vinifera HOM05D005747 ORTHO05D007159 1.5e-09 65.1 42 69.0
Aqoxy1G01163 Aquilegia oxysepala HOM05D005747 ORTHO05D007159 2.6e-09 64.3 42 66.7
Glyma.13G143500 Glycine max HOM05D005747 ORTHO05D007159 2.6e-09 64.3 42 64.3
SGA_v2.0_scaffold75G24844 Striga asiatica HOM05D005747 ORTHO05D007159 2.6e-09 64.3 42 64.3
Ciclev10013173m.g Citrus clementina HOM05D005747 ORTHO05D007159 3.4e-09 63.9 42 66.7
Oeu053677.1 Olea europaea HOM05D005747 ORTHO05D007159 3.4e-09 63.9 42 61.9
THA.LOC104826911 Tarenaya hassleriana HOM05D005747 ORTHO05D007159 4.4e-09 63.5 42 64.3
TAR369G0407 Trochodendron aralioides HOM05D005747 ORTHO05D007159 4.4e-09 63.5 42 66.7
Migut.L01698 Erythranthe guttata HOM05D005747 ORTHO05D007159 7.6e-09 62.8 42 57.1
Glyma.10G057000 Glycine max HOM05D005747 ORTHO05D007159 7.6e-09 62.8 42 61.9
QL07p043606 Quercus lobata HOM05D005747 ORTHO05D007159 7.6e-09 62.8 42 64.3
Rhsim03G0092400 Rhododendron simsii HOM05D005747 ORTHO05D007159 7.6e-09 62.8 42 61.9
Cc06_g04180 Coffea canephora HOM05D005747 ORTHO05D007159 9.9e-09 62.4 42 61.9
Oeu045224.1 Olea europaea HOM05D005747 ORTHO05D007159 9.9e-09 62.4 43 62.8
Carub.0006s0216 Capsella rubella HOM05D005747 ORTHO05D007159 1.3e-08 62.0 42 61.9
Thhalv10015093m.g Eutrema salsugineum HOM05D005747 ORTHO05D007159 1.3e-08 62.0 42 61.9
Glyma.19G183500 Glycine max HOM05D005747 ORTHO05D007159 1.3e-08 62.0 42 61.9
Nn7g38309 Nelumbo nucifera HOM05D005747 ORTHO05D007159 1.3e-08 62.0 42 66.7
Hma1.2p1_0205F.1_g087080 Hydrangea macrophylla HOM05D005747 ORTHO05D007159 1.7e-08 61.6 42 61.9
Hma1.2p1_0205F.1_g087090 Hydrangea macrophylla HOM05D005747 ORTHO05D007159 1.7e-08 61.6 42 61.9
Lj2A1109T71 Lonicera japonica HOM05D005747 ORTHO05D007159 1.7e-08 61.6 41 63.4
MD12G1113800 Malus domestica HOM05D005747 ORTHO05D007159 1.7e-08 61.6 42 64.3
Medtr7g101880 Medicago truncatula HOM05D005747 ORTHO05D007159 1.7e-08 61.6 42 59.5
VMungo1383G0680 Vigna mungo HOM05D005747 ORTHO05D007159 1.7e-08 61.6 42 61.9
Atru.chr8.1820 Acer truncatum HOM05D005747 ORTHO05D007159 2.2e-08 61.2 42 61.9
Aa31LG3G2310 Aethionema arabicum HOM05D005747 ORTHO05D007159 2.2e-08 61.2 42 59.5
Potri.006G125300 Populus trichocarpa HOM05D005747 ORTHO05D007159 2.2e-08 61.2 42 59.5
CSS0033757 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 2.9e-08 60.8 42 57.1
Manes.09G066900 Manihot esculenta HOM05D005747 ORTHO05D007159 2.9e-08 60.8 42 64.3
Thecc.05G065200 Theobroma cacao HOM05D005747 ORTHO05D007159 2.9e-08 60.8 42 61.9
AL6G12680 Arabidopsis lyrata HOM05D005747 ORTHO05D007159 3.7e-08 60.5 42 59.5
AT5G03345 Arabidopsis thaliana HOM05D005747 ORTHO05D007159 3.7e-08 60.5 42 59.5
CSS0033637 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 3.7e-08 60.5 42 64.3
DCAR_020822 Daucus carota HOM05D005747 ORTHO05D007159 3.7e-08 60.5 42 61.9
RcHm_v2.0_Chr3g0470141 Rosa chinensis HOM05D005747 ORTHO05D007159 3.7e-08 60.5 42 64.3
arahy.Tifrunner.gnm1.ann1.47U1LD Arachis hypogaea HOM05D005747 ORTHO05D007159 4.9e-08 60.1 42 64.3
arahy.Tifrunner.gnm1.ann1.548B55 Arachis hypogaea HOM05D005747 ORTHO05D007159 4.9e-08 60.1 42 64.3
arahy.Tifrunner.gnm1.ann1.GC88CS Arachis hypogaea HOM05D005747 ORTHO05D007159 4.9e-08 60.1 42 64.3
arahy.Tifrunner.gnm1.ann1.W5J3RK Arachis hypogaea HOM05D005747 ORTHO05D007159 4.9e-08 60.1 42 64.3
MSTRG.19175 Avicennia marina HOM05D005747 ORTHO05D007159 4.9e-08 60.1 42 57.1
CSS0022084 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 4.9e-08 60.1 42 64.3
MD04G1094200 Malus domestica HOM05D005747 ORTHO05D007159 4.9e-08 60.1 42 61.9
PSO063G6473 Papaver somniferum HOM05D005747 ORTHO05D007159 4.9e-08 60.1 42 61.9
PSO339G2391 Papaver somniferum HOM05D005747 ORTHO05D007159 4.9e-08 60.1 42 61.9
Sp6g39390 Schrenkiella parvula HOM05D005747 ORTHO05D007159 4.9e-08 60.1 42 59.5
Sc02g0001670 Simmondsia chinensis HOM05D005747 ORTHO05D007159 4.9e-08 60.1 42 61.9
TPR.G25697 Trifolium pratense HOM05D005747 ORTHO05D007159 4.9e-08 60.1 42 61.9
Eucgr.A01688 Eucalyptus grandis HOM05D005747 ORTHO05D007159 6.4e-08 59.7 42 61.9
Lj5g0010104 Lotus japonicus HOM05D005747 ORTHO05D007159 6.4e-08 59.7 42 59.5
FAN05G2010 Fragaria x ananassa HOM05D005747 ORTHO05D007159 8.4e-08 59.3 42 61.9
Phvul.001G178800 Phaseolus vulgaris HOM05D005747 ORTHO05D007159 8.4e-08 59.3 42 59.5
PGR004G0006 Punica granatum HOM05D005747 ORTHO05D007159 8.4e-08 59.3 42 61.9
FvH4_6g16280 Fragaria vesca HOM05D005747 ORTHO05D007159 1.1e-07 58.9 42 61.9
FAN14G5754 Fragaria x ananassa HOM05D005747 ORTHO05D007159 1.1e-07 58.9 42 61.9
Lalb_Chr20g0112621 Lupinus albus HOM05D005747 ORTHO05D007159 1.1e-07 58.9 42 57.1
SalBow5G0179 Salvia bowleyana HOM05D005747 ORTHO05D007159 1.1e-07 58.9 42 57.1
SalBow5G1412 Salvia bowleyana HOM05D005747 ORTHO05D007159 1.1e-07 58.9 42 57.1
Duzib093G2107 Durio zibethinus HOM05D005747 ORTHO05D007159 1.4e-07 58.5 42 59.5
FAN02G1695 Fragaria x ananassa HOM05D005747 ORTHO05D007159 1.4e-07 58.5 42 59.5
Psat0s2933g0080 Pisum sativum HOM05D005747 ORTHO05D007159 1.9e-07 58.2 42 57.1
TWI74G1168 Tripterygium wilfordii HOM05D005747 ORTHO05D007159 1.9e-07 58.2 42 61.9
CARHR210000 Cardamine hirsuta HOM05D005747 ORTHO05D007159 2.4e-07 57.8 42 57.1
FAN09G1333 Fragaria x ananassa HOM05D005747 ORTHO05D007159 2.4e-07 57.8 42 61.9
SEGI_15519 Sequoiadendron giganteum HOM05D005747 ORTHO05D007159 2.4e-07 57.8 42 52.4
TPR.G9369 Trifolium pratense HOM05D005747 ORTHO05D007159 2.4e-07 57.8 42 59.5
BcaC03g13014 Brassica carinata HOM05D005747 ORTHO05D007159 3.2e-07 57.4 42 57.1
C02p00970 Brassica napus HOM05D001005 ORTHO05D000836 3.2e-07 57.4 42 57.1
CAN.G900.40 Capsicum annuum HOM05D005747 ORTHO05D007159 4.1e-07 57.0 42 52.4
Potri.016G091900 Populus trichocarpa HOM05D005747 ORTHO05D007159 4.1e-07 57.0 42 52.4
Sed0019850 Sechium edule HOM05D005747 ORTHO05D007159 4.1e-07 57.0 42 59.5
PGSC0003DMG400003860 Solanum tuberosum HOM05D005747 ORTHO05D007159 4.1e-07 57.0 42 54.8
TWI77G0618 Tripterygium wilfordii HOM05D005747 ORTHO05D007159 4.1e-07 57.0 42 59.5
ATR0104G002 Amborella trichopoda HOM05D005747 ORTHO05D007159 5.4e-07 56.6 41 56.1
EL10Ac1g00026 Beta vulgaris HOM05D005747 ORTHO05D007159 5.4e-07 56.6 42 59.5
Phvul.007G149300 Phaseolus vulgaris HOM05D005747 ORTHO05D007159 5.4e-07 56.6 42 59.5
unitig_578.g16384 Utricularia gibba HOM05D005747 ORTHO05D007159 5.4e-07 56.6 42 54.8
HPP92_009808 Vanilla planifolia HOM05D005747 ORTHO05D007159 5.4e-07 56.6 42 61.9
Duzib128G1360 Durio zibethinus HOM05D005747 ORTHO05D007159 7.1e-07 56.2 42 57.1
Glyma.03G182900 Glycine max HOM05D005747 ORTHO05D007159 7.1e-07 56.2 42 57.1
Peaxi162Scf00701g00029 Petunia axillaris HOM05D005747 ORTHO05D007159 7.1e-07 56.2 42 54.8
Ca_11494_v3 Cicer arietinum L. HOM05D005747 ORTHO05D007159 1.2e-06 55.5 42 59.5
Sabra16G0097500 Salix brachista HOM05D005747 ORTHO05D007159 1.2e-06 55.5 43 51.2
Hund20347 Selenicereus undatus HOM05D005747 ORTHO05D007159 1.2e-06 55.5 42 57.1
Solyc09g008140.3 Solanum lycopersicum HOM05D005747 ORTHO05D007159 1.2e-06 55.5 42 52.4
Sopen09g002940 Solanum pennellii HOM05D005747 ORTHO05D007159 1.2e-06 55.5 42 52.4
Dinv37311 Davidia involucrata HOM05D005747 ORTHO05D007159 1.6e-06 55.1 42 59.5
Lalb_Chr02g0155891 Lupinus albus HOM05D005747 ORTHO05D007159 3.5e-06 53.9 42 50.0
TAR633G0139 Trochodendron aralioides HOM05D005747 ORTHO05D007159 3.5e-06 53.9 42 57.1
COL.COLO4_26972 Corchorus olitorius HOM05D005747 ORTHO05D007159 4.6e-06 53.5 42 54.8
MELO3C009353.2 Cucumis melo HOM05D005747 ORTHO05D007159 4.6e-06 53.5 42 57.1
CsaV3_3G035950 Cucumis sativus L. HOM05D005747 ORTHO05D007159 4.6e-06 53.5 42 57.1
Gohir.A09G147500 Gossypium hirsutum HOM05D005747 ORTHO05D007159 4.6e-06 53.5 42 57.1
Gohir.D09G143100 Gossypium hirsutum HOM05D005747 ORTHO05D007159 4.6e-06 53.5 42 57.1
Gorai.006G164600 Gossypium raimondii HOM05D005747 ORTHO05D007159 4.6e-06 53.5 42 57.1
Medtr1g063370 Medicago truncatula HOM05D005747 ORTHO05D007159 4.6e-06 53.5 42 57.1
Psat6g073040 Pisum sativum HOM05D005747 ORTHO05D007159 6.0e-06 53.1 42 57.1
CDE06G0870 Ceratophyllum demersum HOM05D005747 ORTHO05D007159 7.8e-06 52.8 42 57.1
Mapoly0011s0153 Marchantia polymorpha HOM05D005747 ORTHO05D007159 7.8e-06 52.8 42 50.0


User provided reference genes

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