Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0568600 Oryza sativa ssp. japonica HOM05D006549 ORTHO05D008080 2.6e-198 695.3 375 100.0
Zm00001eb200070 Zea mays HOM05D006549 ORTHO05D008080 1.7e-144 516.5 391 74.2
Aqoxy1G00310 Aquilegia oxysepala HOM05D006549 ORTHO05D008080 2.8e-99 366.3 371 54.7
Gohir.A09G111700 Gossypium hirsutum HOM05D006549 ORTHO05D008080 2.8e-99 366.3 378 55.6
Nn7g36445 Nelumbo nucifera HOM05D006549 ORTHO05D008080 2.8e-99 366.3 398 51.8
Gohir.D09G108300 Gossypium hirsutum HOM05D006549 ORTHO05D008080 1.4e-98 364.0 389 54.2
Thecc.09G240800 Theobroma cacao HOM05D006549 ORTHO05D008080 1.4e-98 364.0 397 52.9
Potri.001G254600 Populus trichocarpa HOM05D006549 ORTHO05D008080 1.8e-98 363.6 374 52.7
CiPaw.13G153800 Carya illinoinensis HOM05D006549 ORTHO05D008080 6.9e-98 361.7 377 54.1
Eucgr.B03712 Eucalyptus grandis HOM05D006549 ORTHO05D008080 1.2e-97 360.9 391 54.5
Gorai.006G126000 Gossypium raimondii HOM05D006549 ORTHO05D008080 3.4e-97 359.4 397 53.7
PGR102G0709 Punica granatum HOM05D006549 ORTHO05D008080 1.7e-96 357.1 388 52.1
Medtr5g009010 Medicago truncatula HOM05D006549 ORTHO05D008080 2.2e-96 356.7 378 53.2
GSVIVG01031548001 Vitis vinifera HOM05D006549 ORTHO05D008080 3.8e-96 355.9 391 53.7
Dinv22152 Davidia involucrata HOM05D006549 ORTHO05D008080 8.4e-96 354.8 360 53.9
Cc01_g06100 Coffea canephora HOM05D006549 ORTHO05D008080 1.1e-95 354.4 378 52.4
Phvul.002G033900 Phaseolus vulgaris HOM05D006549 ORTHO05D008080 1.1e-95 354.4 375 52.0
Potri.009G049700 Populus trichocarpa HOM05D006549 ORTHO05D008080 1.1e-95 354.4 372 53.0
Duzib170G0947 Durio zibethinus HOM05D006549 ORTHO05D008080 1.9e-95 353.6 400 51.8
Manes.14G005500 Manihot esculenta HOM05D006549 ORTHO05D008080 4.2e-95 352.4 382 53.1
Actinidia16353 Actinidia chinensis HOM05D006549 ORTHO05D008080 9.3e-95 351.3 358 52.5
Glyma.11G015900 Glycine max HOM05D006549 ORTHO05D008080 1.6e-94 350.5 375 53.9
FAN21G3651 Fragaria x ananassa HOM05D006549 ORTHO05D008080 4.6e-94 349.0 385 50.4
arahy.Tifrunner.gnm1.ann1.2W4GIE Arachis hypogaea HOM05D006549 ORTHO05D008080 1.0e-93 347.8 372 53.2
CSS0047891 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 1.0e-93 347.8 374 51.3
BraA03t09898Z Brassica rapa HOM05D006549 ORTHO05D008080 1.3e-93 347.4 371 50.9
VMungo1215G3210 Vigna mungo HOM05D006549 ORTHO05D008080 1.7e-93 347.1 376 51.9
Actinidia06932 Actinidia chinensis HOM05D006549 ORTHO05D008080 2.3e-93 346.7 368 51.9
FvH4_3g28330 Fragaria vesca HOM05D006549 ORTHO05D008080 3.9e-93 345.9 381 52.2
Ciclev10015584m.g Citrus clementina HOM05D006549 ORTHO05D008080 5.1e-93 345.5 383 53.3
FAN11G3700 Fragaria x ananassa HOM05D006549 ORTHO05D008080 1.1e-92 344.4 380 51.1
MBI13_g04769_MAGBIO Magnolia biondii HOM05D006549 ORTHO05D008080 1.1e-92 344.4 402 49.5
ECA238G1745 Erigeron canadensis HOM05D006549 ORTHO05D008080 2.5e-92 343.2 365 52.1
Glyma.01G226800 Glycine max HOM05D006549 ORTHO05D008080 3.3e-92 342.8 392 51.0
vmacro04120 Vaccinium macrocarpon HOM05D006549 ORTHO05D008080 5.6e-92 342.0 341 55.4
THA.LOC104811185 Tarenaya hassleriana HOM05D006549 ORTHO05D008080 7.3e-92 341.7 381 51.2
TPR.G38023 Trifolium pratense HOM05D006549 ORTHO05D008080 9.6e-92 341.3 378 50.8
Sc09g0000890 Simmondsia chinensis HOM05D006549 ORTHO05D008080 1.3e-91 340.9 370 51.4
Lsat_1_v5_gn_2_29261 Lactuca sativa HOM05D006549 ORTHO05D008080 2.1e-91 340.1 375 51.2
Migut.N02355 Erythranthe guttata HOM05D006549 ORTHO05D008080 2.8e-91 339.7 377 49.3
MD11G1187800 Malus domestica HOM05D006549 ORTHO05D008080 2.8e-91 339.7 389 50.9
ATR0721G160 Amborella trichopoda HOM05D006549 ORTHO05D008080 6.2e-91 338.6 360 52.2
CARHR200690 Cardamine hirsuta HOM05D006549 ORTHO05D008080 8.1e-91 338.2 376 51.1
C09p64480 Brassica napus HOM05D006549 ORTHO05D008080 1.1e-90 337.8 358 50.8
BolC9t59282H Brassica oleracea HOM05D006549 ORTHO05D008080 1.1e-90 337.8 358 50.8
Rhsim13G0217400 Rhododendron simsii HOM05D002345 ORTHO05D002391 1.1e-90 337.8 357 52.7
ClCG03G013060 Citrullus lanatus HOM05D006549 ORTHO05D008080 1.8e-90 337.0 385 51.2
HanXRQChr14g0433001 Helianthus annuus HOM05D006549 ORTHO05D008080 2.4e-90 336.7 355 52.7
Dinv36213 Davidia involucrata HOM05D006549 ORTHO05D008080 3.1e-90 336.3 355 52.1
Sed0027042 Sechium edule HOM05D006549 ORTHO05D008080 5.3e-90 335.5 395 49.4
AUR62000165 Chenopodium quinoa HOM05D006549 ORTHO05D008080 6.9e-90 335.1 363 49.9
CDE08G0181 Ceratophyllum demersum HOM05D006549 ORTHO05D008080 9.0e-90 334.7 370 51.4
DCAR_000660 Daucus carota HOM05D006549 ORTHO05D008080 1.2e-89 334.3 419 46.5
TWI39G1226 Tripterygium wilfordii HOM05D006549 ORTHO05D008080 1.2e-89 334.3 369 52.6
arahy.Tifrunner.gnm1.ann1.9560XR Arachis hypogaea HOM05D006549 ORTHO05D008080 1.5e-89 334.0 366 52.2
Solyc11g065180.2 Solanum lycopersicum HOM05D006549 ORTHO05D008080 2.0e-89 333.6 366 51.1
PSO384G3463 Papaver somniferum HOM05D006549 ORTHO05D008080 2.6e-89 333.2 370 55.9
PGSC0003DMG400031244 Solanum tuberosum HOM05D006549 ORTHO05D008080 2.6e-89 333.2 363 51.0
Aa31LG3G14820 Aethionema arabicum HOM05D006549 ORTHO05D008080 5.8e-89 332.0 385 49.4
A03p05610 Brassica napus HOM05D006549 ORTHO05D008080 7.6e-89 331.6 352 50.9
AUR62039846 Chenopodium quinoa HOM05D006549 ORTHO05D008080 7.6e-89 331.6 366 50.0
Nitab4.5_0006878g0020 Nicotiana tabacum HOM05D006549 ORTHO05D008080 7.6e-89 331.6 368 49.7
MSTRG.17620 Avicennia marina HOM05D006549 ORTHO05D008080 1.7e-88 330.5 392 50.0
Sabra09G0036200 Salix brachista HOM05D006549 ORTHO05D008080 1.7e-88 330.5 431 45.7
unitig_27.g25003 Utricularia gibba HOM05D006549 ORTHO05D008080 2.2e-88 330.1 365 51.2
Oeu025891.1 Olea europaea HOM05D006549 ORTHO05D008080 2.9e-88 329.7 365 48.8
BolC3t13156H Brassica oleracea HOM05D006549 ORTHO05D008080 4.9e-88 328.9 370 50.0
CAN.G633.4 Capsicum annuum HOM05D006549 ORTHO05D008080 6.4e-88 328.6 389 48.1
Sopen11g024900 Solanum pennellii HOM05D006549 ORTHO05D008080 6.4e-88 328.6 365 50.4
CANSAT54G0570 Cannabis sativa HOM05D006549 ORTHO05D008080 1.4e-87 327.4 381 49.1
RcHm_v2.0_Chr5g0051211 Rosa chinensis HOM05D006549 ORTHO05D008080 2.4e-87 326.6 374 50.8
EL10Ac4g10185 Beta vulgaris HOM05D006549 ORTHO05D008080 4.2e-87 325.9 374 48.7
Haze_23190 Corylus avellana HOM05D006549 ORTHO05D008080 4.2e-87 325.9 433 45.3
COL.COLO4_36476 Corchorus olitorius HOM05D006549 ORTHO05D008080 5.4e-87 325.5 379 50.9
MD03G1170300 Malus domestica HOM05D006549 ORTHO05D008080 5.4e-87 325.5 400 47.8
PSO339G6663 Papaver somniferum HOM05D006549 ORTHO05D008080 5.4e-87 325.5 382 55.0
BraA10t44605Z Brassica rapa HOM05D006549 ORTHO05D008080 9.3e-87 324.7 365 49.0
Hund07453 Selenicereus undatus HOM05D006549 ORTHO05D008080 1.6e-86 323.9 360 50.8
Nitab4.5_0002726g0080 Nicotiana tabacum HOM05D006549 ORTHO05D008080 2.1e-86 323.6 361 50.7
Sabra16G0155200 Salix brachista HOM05D006549 ORTHO05D008080 2.7e-86 323.2 449 44.8
CsaV3_1G043000 Cucumis sativus L. HOM05D006549 ORTHO05D008080 3.5e-86 322.8 390 48.7
A10p25410 Brassica napus HOM05D006549 ORTHO05D008080 4.6e-86 322.4 360 49.2
Psat2g186960 Pisum sativum HOM05D000745 ORTHO05D000641 6.7e-85 318.5 369 50.1
Carub.0006s1091 Capsella rubella HOM05D006549 ORTHO05D008080 1.9e-84 317.0 366 50.0
Lalb_Chr09g0320561 Lupinus albus HOM05D006549 ORTHO05D008080 2.5e-84 316.6 388 47.7
AL6G23210 Arabidopsis lyrata HOM05D006549 ORTHO05D008080 5.6e-84 315.5 376 47.9
Sp6g31230 Schrenkiella parvula HOM05D006549 ORTHO05D008080 8.1e-83 311.6 395 47.6
Prupe.4G256800 Prunus persica HOM05D006549 ORTHO05D008080 1.4e-82 310.8 461 42.7
AT5G12410 Arabidopsis thaliana HOM05D006549 ORTHO05D008080 1.8e-82 310.5 389 47.0
C03p06560 Brassica napus HOM05D006549 ORTHO05D008080 1.8e-82 310.5 338 50.3
Thhalv10013724m.g Eutrema salsugineum HOM05D006549 ORTHO05D008080 4.0e-82 309.3 400 46.0
Ca_24492_v3 Cicer arietinum L. HOM05D000745 ORTHO05D000641 2.6e-81 306.6 357 48.7
LjContig00222g0000121 Lotus japonicus HOM05D006549 ORTHO05D008080 4.5e-81 305.8 461 41.4
Atru.chr3.2633 Acer truncatum HOM05D006549 ORTHO05D008080 3.8e-80 302.8 355 50.7
Peaxi162Scf00004g03918 Petunia axillaris HOM05D006549 ORTHO05D008080 3.8e-80 302.8 350 47.7
SGA_v2.0_scaffold42G16082 Striga asiatica HOM05D006549 ORTHO05D008080 8.4e-80 301.6 351 47.9
BcaB01g05403 Brassica carinata HOM05D006549 ORTHO05D008080 3.0e-77 293.1 411 42.6
Lju41A40T23 Lonicera japonica HOM05D006549 ORTHO05D008080 3.3e-76 289.7 331 51.4
QL01p018141 Quercus lobata HOM05D006549 ORTHO05D008080 3.1e-74 283.1 394 43.9
SEGI_14205 Sequoiadendron giganteum HOM05D006549 ORTHO05D008080 9.0e-74 281.6 358 47.5
Ah.06g193800 Amaranthus hybridus HOM05D006549 ORTHO05D008080 4.2e-71 272.7 316 50.0
QL01p018092 Quercus lobata HOM05D006549 ORTHO05D008080 8.7e-69 265.0 332 47.6
Oeu061298.1 Olea europaea HOM05D006549 ORTHO05D008080 2.2e-67 260.4 326 47.2
FAN16G0297 Fragaria x ananassa HOM05D006549 ORTHO05D008080 1.6e-62 244.2 162 72.8
BcaB08g37001 Brassica carinata HOM05D006549 ORTHO05D008080 3.9e-61 239.6 357 41.7
TAR633G0410 Trochodendron aralioides HOM05D006549 ORTHO05D008080 4.1e-58 229.6 142 76.8
SMO013G0006 Selaginella moellendorffii HOM05D006549 ORTHO05D008080 7.4e-52 208.8 361 35.5
Mapoly0091s0083 Marchantia polymorpha HOM05D006549 ORTHO05D008080 7.0e-50 202.2 379 36.4
Hma1.2p1_1043F.1_g251200 Hydrangea macrophylla HOM05D006549 ORTHO05D008080 2.6e-49 200.3 135 68.1
AagrBONN_evm.TU.Sc2ySwM_228.1610 Anthoceros agrestis HOM05D006549 ORTHO05D008080 1.3e-48 198.0 354 34.2
SHI46597 Sapria himalayana HOM05D006549 ORTHO05D008080 1.5e-44 184.5 335 37.9
Pp3c3_2270 Physcomitrium patens HOM05D006549 ORTHO05D008080 1.3e-43 181.4 372 33.3
Cc01_g06170 Coffea canephora HOM05D006549 ORTHO05D008080 8.0e-38 162.2 110 70.9
Duzib168G0228 Durio zibethinus HOM05D006549 ORTHO05D008080 1.3e-35 154.8 296 37.8
HPP92_011577 Vanilla planifolia HOM05D006549 ORTHO05D008080 2.0e-28 131.0 217 44.7
CBR_g300 Chara braunii HOM05D006549 ORTHO05D008080 4.4e-28 129.8 228 31.1
PRCOL_00001563 Prasinoderma coloniale HOM05D006549 ORTHO05D008080 9.1e-26 122.1 181 38.1
MELO3C015170.2 Cucumis melo HOM05D006549 ORTHO05D008080 1.5e-23 114.8 101 56.4
Cre14.g629550 Chlamydomonas reinhardtii HOM05D006549 ORTHO05D008080 2.0e-20 104.4 181 34.3
MELO3C029487.2 Cucumis melo HOM05D006549 ORTHO05D008080 2.6e-20 104.0 64 73.4
MCO09G159 Micromonas commoda HOM05D006549 ORTHO05D008080 7.5e-20 102.4 181 30.4
Cpa.g.sc84.3 Carica papaya HOM05D006549 ORTHO05D008080 1.3e-19 101.7 57 80.7
BolC3t13160H Brassica oleracea HOM05D006549 ORTHO05D008080 5.0e-16 89.7 81 49.4
CSS0036252 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 4.3e-15 86.7 64 65.6
Cpa.g.c41750 Carica papaya HOM05D006549 ORTHO05D008080 1.2e-12 78.6 51 68.6


User provided reference genes

Program Settings