Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0568500 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 7.9e-74 280.4 148 100.0
Zm00001eb114150 Zea mays HOM05D000384 ORTHO05D006260 8.8e-65 250.4 148 89.2
Zm00001eb415970 Zea mays HOM05D000384 ORTHO05D006260 1.1e-64 250.0 148 89.2
Os12g0485800 Oryza sativa ssp. japonica HOM05D000384 ORTHO05D006260 1.0e-57 226.9 145 83.4
GSVIVG01017982001 Vitis vinifera HOM05D000384 ORTHO05D006260 1.8e-54 216.1 145 77.9
TAR636G3061 Trochodendron aralioides HOM05D000384 ORTHO05D006260 3.1e-54 215.3 145 77.2
MELO3C022017.2 Cucumis melo HOM05D000384 ORTHO05D006260 9.1e-54 213.8 147 74.1
Thecc.10G059100 Theobroma cacao HOM05D000384 ORTHO05D006260 3.5e-53 211.8 145 77.2
TPR.G25531 Trifolium pratense HOM05D000384 ORTHO05D006260 5.9e-53 211.1 146 76.7
ClCG05G005160 Citrullus lanatus HOM05D000384 ORTHO05D006260 7.7e-53 210.7 147 73.5
COL.COLO4_10907 Corchorus olitorius HOM05D000384 ORTHO05D006260 7.7e-53 210.7 145 75.9
Dinv44537 Davidia involucrata HOM05D000384 ORTHO05D000468 1.0e-52 210.3 146 74.7
CsaV3_5G038350 Cucumis sativus L. HOM05D000384 ORTHO05D006260 1.3e-52 209.9 147 72.8
Gohir.A10G210600 Gossypium hirsutum HOM05D000384 ORTHO05D006260 1.3e-52 209.9 145 75.9
MSTRG.24739 Avicennia marina HOM05D000384 ORTHO05D006260 2.2e-52 209.1 144 75.0
Ca_14031_v3 Cicer arietinum L. HOM05D000384 ORTHO05D006260 2.2e-52 209.1 146 76.0
Gohir.D10G218900 Gossypium hirsutum HOM05D000384 ORTHO05D006260 2.2e-52 209.1 145 75.2
Gorai.011G245600 Gossypium raimondii HOM05D000384 ORTHO05D006260 2.2e-52 209.1 145 75.2
MBI11_g07539_MAGBIO Magnolia biondii HOM05D000384 ORTHO05D006260 3.8e-52 208.4 142 76.8
Phvul.008G161600 Phaseolus vulgaris HOM05D000384 ORTHO05D006260 3.8e-52 208.4 144 76.4
VMungo0720G1921 Vigna mungo HOM05D000384 ORTHO05D006260 3.8e-52 208.4 144 76.4
Medtr3g007250 Medicago truncatula HOM05D000384 ORTHO05D006260 5.0e-52 208.0 146 75.3
Nn3g18529 Nelumbo nucifera HOM05D000384 ORTHO05D006260 5.0e-52 208.0 145 76.6
Lalb_Chr19g0132471 Lupinus albus HOM05D000384 ORTHO05D006260 8.5e-52 207.2 145 75.2
Manes.03G178300 Manihot esculenta HOM05D000384 ORTHO05D006260 8.5e-52 207.2 145 75.9
Peaxi162Scf00579g00001 Petunia axillaris HOM05D000384 ORTHO05D006260 1.5e-51 206.5 146 74.7
Psat0s3755g0120 Pisum sativum HOM05D000384 ORTHO05D006260 1.5e-51 206.5 146 74.7
Glyma.13G124100 Glycine max HOM05D000384 ORTHO05D006260 1.9e-51 206.1 144 76.4
Glyma.06G316000 Glycine max HOM05D000384 ORTHO05D006260 2.5e-51 205.7 144 75.7
Oeu031225.1 Olea europaea HOM05D000384 ORTHO05D006260 2.5e-51 205.7 143 74.8
Oeu031229.1 Olea europaea HOM05D000384 ORTHO05D006260 2.5e-51 205.7 143 74.8
PGSC0003DMG400016332 Solanum tuberosum HOM05D000384 ORTHO05D006260 2.5e-51 205.7 146 74.7
Cfa015651 Carpinus fangiana HOM05D000384 ORTHO05D006260 3.2e-51 205.3 145 71.7
CiPaw.02G097700 Carya illinoinensis HOM05D000384 ORTHO05D006260 3.2e-51 205.3 145 73.8
Duzib128G1753 Durio zibethinus HOM05D000384 ORTHO05D006260 3.2e-51 205.3 145 74.5
Sc19g0004110 Simmondsia chinensis HOM05D000384 ORTHO05D006260 3.2e-51 205.3 146 74.7
Cc03_g03830 Coffea canephora HOM05D000384 ORTHO05D006260 4.2e-51 204.9 142 76.8
Duzib114G0643 Durio zibethinus HOM05D000384 ORTHO05D006260 4.2e-51 204.9 145 74.5
Nitab4.5_0007474g0030 Nicotiana tabacum HOM05D000384 ORTHO05D006260 4.2e-51 204.9 146 74.7
Sed0018578 Sechium edule HOM05D000384 ORTHO05D006260 4.2e-51 204.9 147 71.4
Glyma.05G087300 Glycine max HOM05D000384 ORTHO05D006260 7.2e-51 204.1 144 75.7
Sopen06g018540 Solanum pennellii HOM05D000384 ORTHO05D006260 7.2e-51 204.1 146 74.7
arahy.Tifrunner.gnm1.ann1.JHWM2T Arachis hypogaea HOM05D000384 ORTHO05D006260 9.4e-51 203.8 147 73.5
arahy.Tifrunner.gnm1.ann1.U3DZXE Arachis hypogaea HOM05D000384 ORTHO05D006260 9.4e-51 203.8 147 73.5
Lj3g0015206 Lotus japonicus HOM05D000384 ORTHO05D006260 9.4e-51 203.8 137 75.9
PSO210G4801 Papaver somniferum HOM05D000384 ORTHO05D006260 9.4e-51 203.8 144 72.9
QL06p002227 Quercus lobata HOM05D000384 ORTHO05D006260 9.4e-51 203.8 146 72.6
TWI09G1519 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 9.4e-51 203.8 145 72.4
Atru.chr4.720 Acer truncatum HOM05D000384 ORTHO05D006260 1.2e-50 203.4 145 72.4
PSO832G3877 Papaver somniferum HOM05D000384 ORTHO05D006260 1.2e-50 203.4 144 72.9
CSS0025710 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 1.6e-50 203.0 146 72.6
CANSAT64G0565 Cannabis sativa HOM05D000384 ORTHO05D006260 1.6e-50 203.0 146 71.9
CAN.G1280.23 Capsicum annuum HOM05D000384 ORTHO05D006260 1.6e-50 203.0 145 76.6
Actinidia40142 Actinidia chinensis HOM05D000384 ORTHO05D006260 2.1e-50 202.6 146 72.6
CSS0048526 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 2.1e-50 202.6 146 72.6
Prupe.1G014300 Prunus persica HOM05D000384 ORTHO05D006260 2.1e-50 202.6 145 71.7
Nitab4.5_0007368g0020 Nicotiana tabacum HOM05D000384 ORTHO05D006260 2.7e-50 202.2 146 72.6
arahy.Tifrunner.gnm1.ann1.K8JXLT Arachis hypogaea HOM05D000384 ORTHO05D006260 3.6e-50 201.8 146 73.3
Haze_00893 Corylus avellana HOM05D000384 ORTHO05D006260 3.6e-50 201.8 146 71.9
MD16G1194400 Malus domestica HOM05D000384 ORTHO05D006260 4.7e-50 201.4 144 71.5
arahy.Tifrunner.gnm1.ann1.T2NEZJ Arachis hypogaea HOM05D000384 ORTHO05D006260 6.1e-50 201.1 147 72.8
Atru.chr4.2459 Acer truncatum HOM05D000384 ORTHO05D006260 8.0e-50 200.7 145 73.1
CiPaw.01G166600 Carya illinoinensis HOM05D000384 ORTHO05D006260 1.0e-49 200.3 145 73.1
Lj3E734T1 Lonicera japonica HOM05D000384 ORTHO05D006260 1.0e-49 200.3 140 75.0
Hma1.2p1_0745F.1_g212050 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 1.4e-49 199.9 146 71.2
TWI53G0398 Tripterygium wilfordii HOM05D000384 ORTHO05D006260 1.4e-49 199.9 145 73.8
CSS0003915 Camellia sinensis var. sinensis HOM05D000384 ORTHO05D006260 1.8e-49 199.5 146 71.9
CAN.G136.5 Capsicum annuum HOM05D000384 ORTHO05D006260 1.8e-49 199.5 146 74.7
AUR62019660 Chenopodium quinoa HOM05D000384 ORTHO05D006260 1.8e-49 199.5 146 70.5
Migut.N00188 Erythranthe guttata HOM05D000384 ORTHO05D006260 1.8e-49 199.5 143 71.3
Aqoxy1G01533 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 4.0e-49 198.4 136 75.0
Aqoxy5G00465 Aquilegia oxysepala HOM05D000384 ORTHO05D006260 4.0e-49 198.4 136 75.0
DCAR_024164 Daucus carota HOM05D000384 ORTHO05D006260 4.0e-49 198.4 140 73.6
Sc13g0004430 Simmondsia chinensis HOM05D000384 ORTHO05D006260 4.0e-49 198.4 146 70.5
Ciclev10006154m.g Citrus clementina HOM05D000384 ORTHO05D006260 5.2e-49 198.0 146 70.5
ECA247G4089 Erigeron canadensis HOM05D000384 ORTHO05D006260 6.8e-49 197.6 145 71.7
SGA_v2.0_scaffold522G52709 Striga asiatica HOM05D000384 ORTHO05D006260 8.8e-49 197.2 144 71.5
Rhsim04G0201900 Rhododendron simsii HOM05D000384 ORTHO05D006260 1.2e-48 196.8 146 70.5
THA.LOC104803028 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 1.5e-48 196.4 145 69.7
THA.LOC104822267 Tarenaya hassleriana HOM05D000384 ORTHO05D006260 1.5e-48 196.4 145 69.7
EL10Ac4g08427 Beta vulgaris HOM05D000384 ORTHO05D006260 2.6e-48 195.7 146 68.5
DCAR_027219 Daucus carota HOM05D000384 ORTHO05D006260 2.6e-48 195.7 140 72.9
Potri.008G153900 Populus trichocarpa HOM05D000384 ORTHO05D006260 2.6e-48 195.7 142 71.8
Sabra08G0117400 Salix brachista HOM05D000384 ORTHO05D006260 2.6e-48 195.7 141 71.6
HanXRQChr08g0229211 Helianthus annuus HOM05D000384 ORTHO05D006260 3.4e-48 195.3 145 70.3
Potri.001G240200 Populus trichocarpa HOM05D000384 ORTHO05D006260 4.4e-48 194.9 142 71.8
SalBow3G1001 Salvia bowleyana HOM05D000384 ORTHO05D006260 5.7e-48 194.5 134 76.1
Cpa.g.sc58.101 Carica papaya HOM05D000384 ORTHO05D006260 7.5e-48 194.1 135 74.8
RcHm_v2.0_Chr1g0362551 Rosa chinensis HOM05D000384 ORTHO05D006260 7.5e-48 194.1 137 71.5
RcHm_v2.0_Chr4g0387021 Rosa chinensis HOM05D000384 ORTHO05D006260 7.5e-48 194.1 137 71.5
AUR62013951 Chenopodium quinoa HOM05D000384 ORTHO05D006260 9.8e-48 193.7 137 72.3
FAN07G0857 Fragaria x ananassa HOM05D000384 ORTHO05D006260 9.8e-48 193.7 137 71.5
RcHm_v2.0_Chr4g0416141 Rosa chinensis HOM05D000384 ORTHO05D006260 1.7e-47 193.0 137 70.8
Eucgr.H03463 Eucalyptus grandis HOM05D000384 ORTHO05D006260 2.8e-47 192.2 145 69.0
Lsat_1_v5_gn_9_18461 Lactuca sativa HOM05D000384 ORTHO05D006260 3.7e-47 191.8 135 74.1
CARHR098380 Cardamine hirsuta HOM05D000384 ORTHO05D006260 4.8e-47 191.4 147 68.7
PGR004G2612 Punica granatum HOM05D000384 ORTHO05D006260 6.3e-47 191.0 145 66.9
Oeu050282.1 Olea europaea HOM05D000384 ORTHO05D006260 1.1e-46 190.3 143 69.9
Sabra16G0144900 Salix brachista HOM05D000384 ORTHO05D006260 1.1e-46 190.3 139 70.5
FvH4_4g15650 Fragaria vesca HOM05D000384 ORTHO05D006260 1.4e-46 189.9 137 70.8
FAN12G1863 Fragaria x ananassa HOM05D000384 ORTHO05D006260 1.4e-46 189.9 137 70.8
FAN17G0123 Fragaria x ananassa HOM05D000384 ORTHO05D006260 1.4e-46 189.9 137 70.1
FAN22G1586 Fragaria x ananassa HOM05D000384 ORTHO05D006260 1.4e-46 189.9 137 70.1
Hund25029 Selenicereus undatus HOM05D000384 ORTHO05D006260 1.8e-46 189.5 146 68.5
Aa31LG8G9040 Aethionema arabicum HOM05D000384 ORTHO05D006260 2.4e-46 189.1 145 66.2
Thhalv10021707m.g Eutrema salsugineum HOM05D000384 ORTHO05D006260 7.0e-46 187.6 146 68.5
SEGI_35673 Sequoiadendron giganteum HOM05D000384 ORTHO05D006260 1.2e-45 186.8 145 67.6
Solyc06g053460.3 Solanum lycopersicum HOM05D000384 ORTHO05D006260 1.6e-45 186.4 122 80.3
BraA03t13424Z Brassica rapa HOM05D000384 ORTHO05D006260 3.5e-45 185.3 136 67.6
AT3G22480 Arabidopsis thaliana HOM05D000384 ORTHO05D006260 1.3e-44 183.3 146 65.8
C03p52530 Brassica napus HOM05D000384 ORTHO05D006260 1.3e-44 183.3 136 68.4
BcaC01g03444 Brassica carinata HOM05D000384 ORTHO05D006260 1.7e-44 183.0 136 68.4
unitig_699.g19994 Utricularia gibba HOM05D000384 ORTHO05D006260 1.7e-44 183.0 143 68.5
BcaC05g28063 Brassica carinata HOM05D000384 ORTHO05D006260 2.9e-44 182.2 136 67.6
C05p40760 Brassica napus HOM05D000384 ORTHO05D006260 2.9e-44 182.2 136 67.6
BolC3t17522H Brassica oleracea HOM05D000384 ORTHO05D006260 2.9e-44 182.2 134 68.7
BolC5t32821H Brassica oleracea HOM05D000384 ORTHO05D006260 2.9e-44 182.2 136 67.6
A03p42770 Brassica napus HOM05D000384 ORTHO05D006260 5.0e-44 181.4 137 67.2
ATR0083G069 Amborella trichopoda HOM05D000384 ORTHO05D006260 6.5e-44 181.0 146 69.2
A05p26280 Brassica napus HOM05D000384 ORTHO05D006260 6.5e-44 181.0 136 67.6
BraA05t21503Z Brassica rapa HOM05D000384 ORTHO05D006260 1.1e-43 180.3 134 67.9
TAR365G0396 Trochodendron aralioides HOM05D000384 ORTHO05D006260 1.1e-43 180.3 120 78.3
BcaB06g26358 Brassica carinata HOM05D000384 ORTHO05D006260 1.5e-43 179.9 132 68.9
BcaB04g19201 Brassica carinata HOM05D000384 ORTHO05D006260 4.2e-43 178.3 136 66.2
Carub.0003s2264 Capsella rubella HOM05D000384 ORTHO05D006260 2.1e-42 176.0 146 65.1
AL3G36790 Arabidopsis lyrata HOM05D000384 ORTHO05D006260 4.0e-41 171.8 146 63.7
C05p40680 Brassica napus HOM05D000384 ORTHO05D006260 4.0e-41 171.8 143 62.9
BolC5t32807H Brassica oleracea HOM05D000384 ORTHO05D006260 4.0e-41 171.8 143 62.9
Mapoly0049s0105 Marchantia polymorpha HOM05D000384 ORTHO05D006260 2.6e-40 169.1 145 60.0
HanXRQChr04g0103741 Helianthus annuus HOM05D000384 ORTHO05D006260 3.7e-39 165.2 117 73.5
SMO169G0080 Selaginella moellendorffii HOM05D000384 ORTHO05D006260 8.3e-39 164.1 147 59.2
AagrBONN_evm.TU.Sc2ySwM_344.1360 Anthoceros agrestis HOM05D000384 ORTHO05D006260 1.1e-38 163.7 137 58.4
Sp3g20250 Schrenkiella parvula HOM05D000384 ORTHO05D006260 3.1e-38 162.2 146 61.6
CBR_g42063 Chara braunii HOM05D000384 ORTHO05D006260 5.0e-36 154.8 133 58.6
Ah.04g163960 Amaranthus hybridus HOM05D000384 ORTHO05D006260 1.9e-35 152.9 145 57.2
HPP92_018608 Vanilla planifolia HOM05D000384 ORTHO05D006260 4.4e-32 141.7 133 58.6
Pp3c23_10300 Physcomitrium patens HOM05D000384 ORTHO05D006260 6.4e-31 137.9 139 54.0
AagrBONN_evm.TU.Sc2ySwM_228.3583 Anthoceros agrestis HOM05D000384 ORTHO05D006260 7.8e-29 131.0 107 57.0
Pp3c24_3120 Physcomitrium patens HOM05D000384 ORTHO05D006260 1.2e-26 123.6 140 50.0
HPP92_018610 Vanilla planifolia HOM05D000384 ORTHO05D006260 3.4e-24 115.5 90 67.8
MCO05G108 Micromonas commoda HOM05D000384 ORTHO05D006260 2.1e-21 106.3 131 42.7
Hma1.2p1_0602F.1_g187390 Hydrangea macrophylla HOM05D000384 ORTHO05D006260 6.6e-20 101.3 106 56.6
Cre07.g342250 Chlamydomonas reinhardtii HOM05D000384 ORTHO05D006260 1.1e-19 100.5 136 41.9
BcaC05g28047 Brassica carinata HOM05D000384 ORTHO05D006260 4.3e-19 98.6 103 52.4
PRCOL_00004688 Prasinoderma coloniale HOM05D000384 ORTHO05D006260 2.3e-12 76.3 88 45.5
CDE09G0159 Ceratophyllum demersum HOM05D000384 ORTHO05D006260 3.6e-10 68.9 56 66.1


User provided reference genes

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