Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0567800 Oryza sativa ssp. japonica HOM05D000071 ORTHO05D000029 4.6e-38 160.6 75 100.0
Zm00001eb114120 Zea mays HOM05D000071 ORTHO05D000029 4.4e-12 74.3 80 47.5
Os11g0558400 Oryza sativa ssp. japonica HOM05D000071 ORTHO05D000029 1.3e-11 72.8 51 62.7
Os11g0561100 Oryza sativa ssp. japonica HOM05D000071 ORTHO05D000029 1.8e-10 68.9 54 59.3
Os11g0564900 Oryza sativa ssp. japonica HOM05D000071 ORTHO05D000029 1.8e-10 68.9 65 43.1
Os11g0558900 Oryza sativa ssp. japonica HOM05D000071 ORTHO05D000029 5.3e-10 67.4 45 64.4
Zm00001eb261230 Zea mays HOM05D000071 ORTHO05D000029 1.2e-09 66.2 41 68.3
Os11g0565920 Oryza sativa ssp. japonica HOM05D000071 ORTHO05D000029 1.6e-09 65.9 67 52.2
Os11g0565000 Oryza sativa ssp. japonica HOM05D000071 ORTHO05D000029 5.9e-09 63.9 52 55.8
Os01g0603800 Oryza sativa ssp. japonica HOM05D000071 ORTHO05D000029 1.7e-08 62.4 81 44.4
Dinv28357 Davidia involucrata HOM05D000071 ORTHO05D000029 2.2e-08 62.0 45 55.6
Os10g0120300 Oryza sativa ssp. japonica HOM05D000071 ORTHO05D000029 2.2e-08 62.0 60 46.7
Duzib147G0888 Durio zibethinus HOM05D000071 ORTHO05D000029 3.8e-08 61.2 43 62.8
QL05p023777 Quercus lobata HOM05D000071 ORTHO05D000029 3.8e-08 61.2 42 61.9
Sabra10G0078100 Salix brachista HOM05D000071 ORTHO05D000029 3.8e-08 61.2 63 44.4
Sed0013550 Sechium edule HOM05D000071 ORTHO05D000029 5.0e-08 60.8 43 55.8
AUR62015386 Chenopodium quinoa HOM05D000071 ORTHO05D000029 8.5e-08 60.1 46 56.5
Dinv28437 Davidia involucrata HOM05D000071 ORTHO05D000029 8.5e-08 60.1 73 41.1
Os06g0140200 Oryza sativa ssp. japonica HOM05D000071 ORTHO05D000029 8.5e-08 60.1 58 48.3
Ah.13g070410 Amaranthus hybridus HOM05D000071 ORTHO05D000029 1.1e-07 59.7 49 51.0
QL05p023979 Quercus lobata HOM05D000071 ORTHO05D000029 1.1e-07 59.7 42 59.5
Dinv28358 Davidia involucrata HOM05D000071 ORTHO05D000029 1.5e-07 59.3 43 53.5
Nitab4.5_0000617g0250 Nicotiana tabacum HOM05D000071 ORTHO05D000029 1.5e-07 59.3 74 40.5
Zm00001eb163590 Zea mays HOM05D000071 ORTHO05D000029 1.5e-07 59.3 40 62.5
AUR62021086 Chenopodium quinoa HOM05D000071 ORTHO05D000029 1.9e-07 58.9 44 56.8
Dinv02378 Davidia involucrata HOM05D000071 ORTHO05D000029 1.9e-07 58.9 44 59.1
Lsat_1_v5_gn_6_48860 Lactuca sativa HOM05D000071 ORTHO05D000029 1.9e-07 58.9 84 39.3
Nitab4.5_0010556g0030 Nicotiana tabacum HOM05D000071 ORTHO05D000029 1.9e-07 58.9 74 40.5
QL05p024087 Quercus lobata HOM05D000071 ORTHO05D000029 1.9e-07 58.9 42 59.5
Dinv34738 Davidia involucrata HOM05D000071 ORTHO05D000029 2.5e-07 58.5 70 47.1
Glyma.16G163400 Glycine max HOM05D000071 ORTHO05D000029 2.5e-07 58.5 47 51.1
Glyma.16G171400 Glycine max HOM05D000071 ORTHO05D000029 2.5e-07 58.5 72 40.3
TPR.G28032 Trifolium pratense HOM05D000071 ORTHO05D000029 2.5e-07 58.5 70 41.4
Ah.08g218180 Amaranthus hybridus HOM05D000071 ORTHO05D000029 3.2e-07 58.2 49 49.0
EL10Ac3g05383 Beta vulgaris HOM05D000071 ORTHO05D000029 3.2e-07 58.2 51 43.1
COL.COLO4_17178 Corchorus olitorius HOM05D000071 ORTHO05D000029 3.2e-07 58.2 72 44.4
Glyma.16G172300 Glycine max HOM05D000071 ORTHO05D000029 3.2e-07 58.2 72 37.5
Manes.16G058200 Manihot esculenta HOM05D000071 ORTHO05D000029 3.2e-07 58.2 68 47.1
Potri.010G107000 Populus trichocarpa HOM05D000071 ORTHO05D000029 3.2e-07 58.2 63 44.4
RcHm_v2.0_Chr5g0020901 Rosa chinensis HOM05D000071 ORTHO05D000029 3.2e-07 58.2 71 40.8
Cfa000853 Carpinus fangiana HOM05D000071 ORTHO05D000029 4.2e-07 57.8 43 46.5
Lj6C31T0 Lonicera japonica HOM05D000071 ORTHO05D000029 4.2e-07 57.8 67 38.8
Lj6C47T1 Lonicera japonica HOM05D000071 ORTHO05D000029 4.2e-07 57.8 67 38.8
QL05p024068 Quercus lobata HOM05D000071 ORTHO05D000029 4.2e-07 57.8 42 54.8
Cfa016336 Carpinus fangiana HOM05D000071 ORTHO05D000029 5.5e-07 57.4 43 51.2
EL10Ac3g05932 Beta vulgaris HOM05D000071 ORTHO05D000029 7.2e-07 57.0 46 56.5
CANSAT78G1516 Cannabis sativa HOM05D001705 ORTHO05D002725 7.2e-07 57.0 69 43.5
AUR62021084 Chenopodium quinoa HOM05D000071 ORTHO05D000029 7.2e-07 57.0 47 55.3
Lsat_1_v5_gn_6_51600 Lactuca sativa HOM05D000071 ORTHO05D000029 7.2e-07 57.0 81 39.5
QL05p008200 Quercus lobata HOM05D000071 ORTHO05D000029 7.2e-07 57.0 42 57.1
Ah.13g067930 Amaranthus hybridus HOM05D000071 ORTHO05D000029 9.4e-07 56.6 40 57.5
EL10Ac3g05934 Beta vulgaris HOM05D000071 ORTHO05D000029 9.4e-07 56.6 45 55.6
Dinv05862 Davidia involucrata HOM05D000071 ORTHO05D000029 9.4e-07 56.6 43 58.1
Glyma.16G170700 Glycine max HOM05D000071 ORTHO05D000029 9.4e-07 56.6 68 36.8
Lj6C43T1 Lonicera japonica HOM05D000071 ORTHO05D000029 9.4e-07 56.6 66 39.4
Lj6P50T20 Lonicera japonica HOM05D000071 ORTHO05D000029 9.4e-07 56.6 67 38.8
Oeu054811.1 Olea europaea HOM05D000071 ORTHO05D000029 9.4e-07 56.6 57 43.9
QL04p093573 Quercus lobata HOM05D000071 ORTHO05D000029 9.4e-07 56.6 44 59.1
Thecc.04G034200 Theobroma cacao HOM05D000071 ORTHO05D000029 9.4e-07 56.6 43 58.1
Zm00001eb121910 Zea mays HOM05D000071 ORTHO05D000029 9.4e-07 56.6 45 55.6
AUR62031447 Chenopodium quinoa HOM05D000071 ORTHO05D000029 1.2e-06 56.2 47 53.2
Lsat_1_v5_gn_1_52900 Lactuca sativa HOM05D001705 ORTHO05D002725 1.2e-06 56.2 61 45.9
Lsat_1_v5_gn_6_42181 Lactuca sativa HOM05D000071 ORTHO05D000029 1.2e-06 56.2 40 52.5
Lsat_1_v5_gn_6_51440 Lactuca sativa HOM05D000071 ORTHO05D000029 1.2e-06 56.2 82 37.8
Lj5P370T48 Lonicera japonica HOM05D000071 ORTHO05D000029 1.2e-06 56.2 43 60.5
Lj5P372T12 Lonicera japonica HOM05D000071 ORTHO05D000029 1.2e-06 56.2 43 60.5
Lj6A30T18 Lonicera japonica HOM05D000071 ORTHO05D000029 1.2e-06 56.2 66 39.4
Lj6C49T0 Lonicera japonica HOM05D000071 ORTHO05D000029 1.2e-06 56.2 67 37.3
Potri.010G106900 Populus trichocarpa HOM05D000071 ORTHO05D000029 1.2e-06 56.2 63 42.9
vmacro20009 Vaccinium macrocarpon HOM05D000071 ORTHO05D000029 1.2e-06 56.2 42 52.4
COL.COLO4_17185 Corchorus olitorius HOM05D000071 ORTHO05D000029 1.6e-06 55.8 43 55.8
Dinv25664 Davidia involucrata HOM05D000071 ORTHO05D000029 1.6e-06 55.8 43 58.1
Hma1.2p1_0747F.1_g212480 Hydrangea macrophylla HOM05D000071 ORTHO05D000029 1.6e-06 55.8 48 54.2
Hma1.2p1_1011F.1_g247590 Hydrangea macrophylla HOM05D000071 ORTHO05D000029 1.6e-06 55.8 43 55.8
Hma1.2p1_1014F.1_g247910 Hydrangea macrophylla HOM05D000071 ORTHO05D000029 1.6e-06 55.8 42 50.0
Oeu054804.1 Olea europaea HOM05D000071 ORTHO05D000029 1.6e-06 55.8 54 44.4
EL10Ac3g05373 Beta vulgaris HOM05D000071 ORTHO05D000029 2.1e-06 55.5 45 53.3
EL10Ac3g05396 Beta vulgaris HOM05D000071 ORTHO05D000029 2.1e-06 55.5 67 38.8
Cfa012375 Carpinus fangiana HOM05D000071 ORTHO05D000029 2.1e-06 55.5 72 37.5
Glyma.16G125200 Glycine max HOM05D000071 ORTHO05D000029 2.1e-06 55.5 72 38.9
Glyma.16G171500 Glycine max HOM05D000071 ORTHO05D000029 2.1e-06 55.5 68 38.2
Glyma.16G172100 Glycine max HOM05D000071 ORTHO05D000029 2.1e-06 55.5 68 38.2
Lj6A31G15 Lonicera japonica HOM05D000071 ORTHO05D000029 2.1e-06 55.5 43 51.2
QL08p020060 Quercus lobata HOM05D000071 ORTHO05D000029 2.1e-06 55.5 42 54.8
AT1G33600 Arabidopsis thaliana HOM05D001705 ORTHO05D002725 2.7e-06 55.1 43 55.8
Carub.0001s3181 Capsella rubella HOM05D001705 ORTHO05D002725 2.7e-06 55.1 48 52.1
CAN.G1034.27 Capsicum annuum HOM05D000071 ORTHO05D000029 2.7e-06 55.1 75 46.7
Ciclev10006793m.g Citrus clementina HOM05D000071 ORTHO05D000029 2.7e-06 55.1 45 53.3
Ciclev10007373m.g Citrus clementina HOM05D000071 ORTHO05D000029 2.7e-06 55.1 66 43.9
Ciclev10010520m.g Citrus clementina HOM05D000071 ORTHO05D000029 2.7e-06 55.1 66 43.9
Ciclev10027376m.g Citrus clementina HOM05D000071 ORTHO05D000029 2.7e-06 55.1 42 54.8
Dinv25665 Davidia involucrata HOM05D000071 ORTHO05D000029 2.7e-06 55.1 42 59.5
Dinv34741 Davidia involucrata HOM05D000071 ORTHO05D000029 2.7e-06 55.1 42 54.8
Glyma.16G170800 Glycine max HOM05D000071 ORTHO05D000029 2.7e-06 55.1 72 37.5
Glyma.16G172200 Glycine max HOM05D000071 ORTHO05D000029 2.7e-06 55.1 67 38.8
MD00G1189100 Malus domestica HOM05D000071 ORTHO05D000029 2.7e-06 55.1 44 56.8
MD14G1186500 Malus domestica HOM05D000071 ORTHO05D000029 2.7e-06 55.1 44 56.8
Nitab4.5_0000617g0260 Nicotiana tabacum HOM05D000071 ORTHO05D000029 2.7e-06 55.1 70 45.7
Rhsim03G0183200 Rhododendron simsii HOM05D000071 ORTHO05D000029 2.7e-06 55.1 44 52.3
Actinidia33174 Actinidia chinensis HOM05D000071 ORTHO05D000029 3.6e-06 54.7 69 40.6
AT1G33670 Arabidopsis thaliana HOM05D001705 ORTHO05D002725 3.6e-06 54.7 43 53.5
AT2G26380 Arabidopsis thaliana HOM05D001705 ORTHO05D002725 3.6e-06 54.7 44 54.5
CANSAT11G1634 Cannabis sativa HOM05D000071 ORTHO05D000029 3.6e-06 54.7 73 39.7
CANSAT11G2659 Cannabis sativa HOM05D000071 ORTHO05D000029 3.6e-06 54.7 42 50.0
AUR62002304 Chenopodium quinoa HOM05D000071 ORTHO05D000029 3.6e-06 54.7 44 54.5
Ciclev10007014m.g Citrus clementina HOM05D000071 ORTHO05D000029 3.6e-06 54.7 44 54.5
MELO3C005450.2 Cucumis melo HOM05D000071 ORTHO05D000029 3.6e-06 54.7 44 54.5
Glyma.16G126100 Glycine max HOM05D000071 ORTHO05D000029 3.6e-06 54.7 72 37.5
Glyma.16G171200 Glycine max HOM05D000071 ORTHO05D000029 3.6e-06 54.7 72 37.5
Gohir.D12G145400 Gossypium hirsutum HOM05D000071 ORTHO05D000029 3.6e-06 54.7 72 41.7
Gorai.008G156800 Gossypium raimondii HOM05D000071 ORTHO05D000029 3.6e-06 54.7 72 41.7
HanXRQChr07g0204681 Helianthus annuus HOM05D000071 ORTHO05D000029 3.6e-06 54.7 72 43.1
MD14G1186300 Malus domestica HOM05D000071 ORTHO05D000029 3.6e-06 54.7 44 56.8
Prupe.2G168800 Prunus persica HOM05D000071 ORTHO05D000029 3.6e-06 54.7 51 49.0
SalBow7G1435 Salvia bowleyana HOM05D004358 ORTHO05D004960 3.6e-06 54.7 44 56.8
SalBow7G3001 Salvia bowleyana HOM05D000071 ORTHO05D000029 3.6e-06 54.7 44 56.8
SalBow7G3938 Salvia bowleyana HOM05D000071 ORTHO05D000029 3.6e-06 54.7 44 56.8
SalBow7G4068 Salvia bowleyana HOM05D000071 ORTHO05D000029 3.6e-06 54.7 44 56.8
AT1G33610 Arabidopsis thaliana HOM05D001705 ORTHO05D002725 4.7e-06 54.3 68 41.2
AUR62002301 Chenopodium quinoa HOM05D000071 ORTHO05D000029 4.7e-06 54.3 44 50.0
AUR62002330 Chenopodium quinoa HOM05D000071 ORTHO05D000029 4.7e-06 54.3 44 50.0
Ciclev10014246m.g Citrus clementina HOM05D000071 ORTHO05D000029 4.7e-06 54.3 77 40.3
Ciclev10017769m.g Citrus clementina HOM05D000071 ORTHO05D000029 4.7e-06 54.3 68 41.2
Ciclev10030176m.g Citrus clementina HOM05D000071 ORTHO05D000029 4.7e-06 54.3 42 57.1
Cc10_g16350 Coffea canephora HOM05D001705 ORTHO05D002725 4.7e-06 54.3 43 53.5
CsaV3_5G005050 Cucumis sativus L. HOM05D000071 ORTHO05D000029 4.7e-06 54.3 40 57.5
Hma1.2p1_1220F.1_g268020 Hydrangea macrophylla HOM05D000071 ORTHO05D000029 4.7e-06 54.3 43 51.2
Lsat_1_v5_gn_6_51420 Lactuca sativa HOM05D000071 ORTHO05D000029 4.7e-06 54.3 40 50.0
Lj1P482T11 Lonicera japonica HOM05D000071 ORTHO05D000029 4.7e-06 54.3 64 43.8
Lj3A915T46 Lonicera japonica HOM05D000071 ORTHO05D000029 4.7e-06 54.3 46 50.0
PGR083G2557 Punica granatum HOM05D000071 ORTHO05D000029 4.7e-06 54.3 70 44.3
PGR142G3042 Punica granatum HOM05D000071 ORTHO05D000029 4.7e-06 54.3 72 41.7
QL09p011863 Quercus lobata HOM05D000071 ORTHO05D000029 4.7e-06 54.3 68 41.2
QL09p011872 Quercus lobata HOM05D000071 ORTHO05D000029 4.7e-06 54.3 68 41.2
QL93p0310_0045 Quercus lobata HOM05D000071 ORTHO05D000029 4.7e-06 54.3 44 56.8
VMungo0464G1206 Vigna mungo HOM05D000071 ORTHO05D000029 4.7e-06 54.3 64 42.2
GSVIVG01028783001 Vitis vinifera HOM05D000071 ORTHO05D000029 4.7e-06 54.3 46 56.5
GSVIVG01028786001 Vitis vinifera HOM05D000071 ORTHO05D000029 4.7e-06 54.3 71 43.7
arahy.Tifrunner.gnm1.ann1.AJNB5J Arachis hypogaea HOM05D000071 ORTHO05D000029 6.1e-06 53.9 68 44.1
arahy.Tifrunner.gnm1.ann1.MX2LUH Arachis hypogaea HOM05D000071 ORTHO05D000029 6.1e-06 53.9 68 44.1
CSS0019293 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 6.1e-06 53.9 72 41.7
CSS0047299 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 6.1e-06 53.9 72 41.7
Ciclev10007379m.g Citrus clementina HOM05D000071 ORTHO05D000029 6.1e-06 53.9 72 40.3
Ciclev10010776m.g Citrus clementina HOM05D000071 ORTHO05D000029 6.1e-06 53.9 72 40.3
Ciclev10029857m.g Citrus clementina HOM05D000071 ORTHO05D000029 6.1e-06 53.9 65 46.2
Thhalv10007627m.g Eutrema salsugineum HOM05D001705 ORTHO05D002725 6.1e-06 53.9 43 55.8
Glyma.16G171050 Glycine max HOM05D000071 ORTHO05D000029 6.1e-06 53.9 72 37.5
Glyma.16G171632 Glycine max HOM05D000071 ORTHO05D000029 6.1e-06 53.9 72 37.5
Lj5P372T7 Lonicera japonica HOM05D000071 ORTHO05D000029 6.1e-06 53.9 69 40.6
Medtr5g047390 Medicago truncatula HOM05D000071 ORTHO05D000029 6.1e-06 53.9 69 37.7
Nitab4.5_0020675g0010 Nicotiana tabacum HOM05D000071 ORTHO05D000029 6.1e-06 53.9 63 46.0
Potri.015G025800 Populus trichocarpa HOM05D000071 ORTHO05D000029 6.1e-06 53.9 44 54.5
Prupe.2G169000 Prunus persica HOM05D000071 ORTHO05D000029 6.1e-06 53.9 68 42.6
QL04p093579 Quercus lobata HOM05D000071 ORTHO05D000029 6.1e-06 53.9 44 54.5
QL93p0310_0029 Quercus lobata HOM05D000071 ORTHO05D000029 6.1e-06 53.9 44 54.5
AL1G48080 Arabidopsis lyrata HOM05D001705 ORTHO05D002725 8.0e-06 53.5 43 55.8
arahy.Tifrunner.gnm1.ann1.5S13YY Arachis hypogaea HOM05D000071 ORTHO05D000029 8.0e-06 53.5 43 53.5
BcaB03g13692 Brassica carinata HOM05D001705 ORTHO05D002725 8.0e-06 53.5 43 53.5
CAN.G1034.17 Capsicum annuum HOM05D000071 ORTHO05D000029 8.0e-06 53.5 42 59.5
CAN.G625.35 Capsicum annuum HOM05D001705 ORTHO05D002725 8.0e-06 53.5 57 45.6
AUR62021099 Chenopodium quinoa HOM05D000071 ORTHO05D000029 8.0e-06 53.5 44 52.3
ClCG03G004110 Citrullus lanatus HOM05D000071 ORTHO05D000029 8.0e-06 53.5 65 41.5
Ciclev10006453m.g Citrus clementina HOM05D000071 ORTHO05D000029 8.0e-06 53.5 45 53.3
Haze_00087 Corylus avellana HOM05D000071 ORTHO05D000029 8.0e-06 53.5 67 37.3
Haze_21507 Corylus avellana HOM05D000071 ORTHO05D000029 8.0e-06 53.5 70 35.7
MELO3C005428.2 Cucumis melo HOM05D000071 ORTHO05D000029 8.0e-06 53.5 43 53.5
Dinv07783 Davidia involucrata HOM05D000071 ORTHO05D000029 8.0e-06 53.5 42 54.8
Dinv34740 Davidia involucrata HOM05D000071 ORTHO05D000029 8.0e-06 53.5 52 53.8
Hma1.2p1_0142F.1_g064280 Hydrangea macrophylla HOM05D000071 ORTHO05D000029 8.0e-06 53.5 44 54.5
Lj6C37T1 Lonicera japonica HOM05D000071 ORTHO05D000029 8.0e-06 53.5 66 34.8
MD05G1236100 Malus domestica HOM05D000071 ORTHO05D000029 8.0e-06 53.5 72 41.7
Manes.15G134600 Manihot esculenta HOM05D000071 ORTHO05D000029 8.0e-06 53.5 46 52.2
Medtr5g047490 Medicago truncatula HOM05D000071 ORTHO05D000029 8.0e-06 53.5 69 36.2


User provided reference genes

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