Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0565400 Oryza sativa ssp. japonica HOM05D006946 ORTHO05D008634 3.7e-73 278.1 138 100.0
Zm00001eb200010 Zea mays HOM05D006946 ORTHO05D008634 2.1e-12 76.3 50 76.0
Hma1.2p1_0072F.1_g038330 Hydrangea macrophylla HOM05D006946 ORTHO05D008634 8.1e-12 74.3 64 59.4
Aqoxy1G01627 Aquilegia oxysepala HOM05D006946 ORTHO05D008634 6.8e-11 71.2 48 64.6
Aqoxy5G04137 Aquilegia oxysepala HOM05D006946 ORTHO05D008634 6.8e-11 71.2 48 64.6
Sabra02G0106500 Salix brachista HOM05D006946 ORTHO05D008634 1.2e-10 70.5 88 47.7
Hma1.2p1_0072F.1_g038310 Hydrangea macrophylla HOM05D006946 ORTHO05D008634 4.4e-10 68.6 45 71.1
Nn1g00836 Nelumbo nucifera HOM05D006946 ORTHO05D008634 5.8e-10 68.2 51 64.7
HPP92_022101 Vanilla planifolia HOM05D006946 ORTHO05D008634 5.8e-10 68.2 47 61.7
HPP92_022132 Vanilla planifolia HOM05D006946 ORTHO05D008634 7.5e-10 67.8 45 64.4
PGR042G0965 Punica granatum HOM05D006946 ORTHO05D008634 9.8e-10 67.4 44 75.0
Thecc.01G395400 Theobroma cacao HOM05D006946 ORTHO05D008634 1.3e-09 67.0 44 70.5
Atru.chr5.122 Acer truncatum HOM05D006946 ORTHO05D008634 1.7e-09 66.6 44 65.9
Gohir.A12G097300 Gossypium hirsutum HOM05D006946 ORTHO05D008634 1.7e-09 66.6 44 65.9
HPP92_022105 Vanilla planifolia HOM05D006946 ORTHO05D008634 1.7e-09 66.6 49 61.2
Potri.002G138000 Populus trichocarpa HOM05D006946 ORTHO05D008634 2.2e-09 66.2 84 45.2
Cpa.g.sc22.64 Carica papaya HOM05D006946 ORTHO05D008634 2.9e-09 65.9 46 60.9
Migut.B01532 Erythranthe guttata HOM05D006946 ORTHO05D008634 2.9e-09 65.9 45 66.7
GSVIVG01018284001 Vitis vinifera HOM05D006946 ORTHO05D008634 2.9e-09 65.9 45 71.1
Duzib133G0968 Durio zibethinus HOM05D006946 ORTHO05D008634 3.7e-09 65.5 44 65.9
TAR629G0179 Trochodendron aralioides HOM05D006946 ORTHO05D008634 3.7e-09 65.5 44 68.2
THA.LOC104817188 Tarenaya hassleriana HOM05D006946 ORTHO05D008634 4.9e-09 65.1 44 65.9
EL10Ac1g00757 Beta vulgaris HOM05D006946 ORTHO05D008634 6.4e-09 64.7 44 68.2
SalBow5G3575 Salvia bowleyana HOM05D006946 ORTHO05D008634 8.3e-09 64.3 45 64.4
vmacro13524 Vaccinium macrocarpon HOM05D006946 ORTHO05D008634 8.3e-09 64.3 67 50.7
Actinidia32506 Actinidia chinensis HOM05D006946 ORTHO05D008634 1.1e-08 63.9 45 66.7
CSS0010598 Camellia sinensis var. sinensis HOM05D006946 ORTHO05D008634 1.1e-08 63.9 45 66.7
vmacro13499 Vaccinium macrocarpon HOM05D006946 ORTHO05D008634 1.1e-08 63.9 45 62.2
Rhsim07G0036200 Rhododendron simsii HOM05D006946 ORTHO05D008634 1.4e-08 63.5 45 62.2
MSTRG.20688 Avicennia marina HOM05D006946 ORTHO05D008634 1.9e-08 63.2 45 68.9
Cfa011066 Carpinus fangiana HOM05D006946 ORTHO05D008634 1.9e-08 63.2 51 62.7
COL.COLO4_12403 Corchorus olitorius HOM05D006946 ORTHO05D008634 1.9e-08 63.2 44 63.6
Haze_02851 Corylus avellana HOM05D006946 ORTHO05D008634 1.9e-08 63.2 51 62.7
PSO675G1257 Papaver somniferum HOM05D006946 ORTHO05D008634 1.9e-08 63.2 44 65.9
SGA_v2.0_scaffold340G49324 Striga asiatica HOM05D006946 ORTHO05D008634 1.9e-08 63.2 45 60.0
Ah.05g177890 Amaranthus hybridus HOM05D006946 ORTHO05D008634 2.4e-08 62.8 74 47.3
Nitab4.5_0007027g0020 Nicotiana tabacum HOM05D006946 ORTHO05D008634 2.4e-08 62.8 43 67.4
AL5G42520 Arabidopsis lyrata HOM05D006946 ORTHO05D008634 3.2e-08 62.4 44 61.4
Gohir.D12G100200 Gossypium hirsutum HOM05D006946 ORTHO05D008634 3.2e-08 62.4 44 61.4
Sc02g0003120 Simmondsia chinensis HOM05D006946 ORTHO05D008634 3.2e-08 62.4 47 61.7
CAN.G1473.5 Capsicum annuum HOM05D006946 ORTHO05D008634 4.1e-08 62.0 44 63.6
Sp5g02920 Schrenkiella parvula HOM05D006946 ORTHO05D008634 4.1e-08 62.0 45 60.0
Hund27407 Selenicereus undatus HOM05D006946 ORTHO05D008634 4.1e-08 62.0 48 62.5
Gorai.008G109100 Gossypium raimondii HOM05D006946 ORTHO05D008634 7.1e-08 61.2 44 61.4
Nitab4.5_0000920g0010 Nicotiana tabacum HOM05D006946 ORTHO05D008634 7.1e-08 61.2 45 64.4
CARHR170620 Cardamine hirsuta HOM05D006946 ORTHO05D008634 9.2e-08 60.8 44 59.1
Ciclev10020918m.g Citrus clementina HOM05D006946 ORTHO05D008634 9.2e-08 60.8 45 62.2
HanXRQChr13g0423251 Helianthus annuus HOM05D006946 ORTHO05D008634 9.2e-08 60.8 45 66.7
Carub.0005s2704 Capsella rubella HOM05D006946 ORTHO05D008634 1.2e-07 60.5 45 57.8
Solyc01g090220.4 Solanum lycopersicum HOM05D006946 ORTHO05D008634 1.2e-07 60.5 44 59.1
PGSC0003DMG400025996 Solanum tuberosum HOM05D006946 ORTHO05D008634 1.2e-07 60.5 44 59.1
Aa31LG10G14420 Aethionema arabicum HOM05D006946 ORTHO05D008634 1.6e-07 60.1 44 61.4
BolC4t24784H Brassica oleracea HOM05D006946 ORTHO05D008634 1.6e-07 60.1 45 60.0
BraA04t15895Z Brassica rapa HOM05D006946 ORTHO05D008634 1.6e-07 60.1 45 60.0
Glyma.03G110700 Glycine max HOM05D006946 ORTHO05D008634 1.6e-07 60.1 46 63.0
PSO717G0092 Papaver somniferum HOM05D006946 ORTHO05D008634 1.6e-07 60.1 44 63.6
QL04p030124 Quercus lobata HOM05D006946 ORTHO05D008634 1.6e-07 60.1 44 63.6
Mapoly0040s0025 Marchantia polymorpha HOM05D006946 ORTHO05D008634 2.1e-07 59.7 39 66.7
RcHm_v2.0_Chr1g0347961 Rosa chinensis HOM05D006946 ORTHO05D008634 2.1e-07 59.7 47 57.4
Thhalv10006060m.g Eutrema salsugineum HOM05D006946 ORTHO05D008634 2.7e-07 59.3 44 56.8
Lsat_1_v5_gn_3_126900 Lactuca sativa HOM05D006946 ORTHO05D008634 2.7e-07 59.3 44 65.9
CANSAT25G1232 Cannabis sativa HOM05D006946 ORTHO05D008634 3.5e-07 58.9 47 57.4
AUR62023403 Chenopodium quinoa HOM05D006946 ORTHO05D008634 3.5e-07 58.9 50 56.0
FAN10G0617 Fragaria x ananassa HOM05D006946 ORTHO05D008634 3.5e-07 58.9 47 57.4
Sopen01g036020 Solanum pennellii HOM05D006946 ORTHO05D008634 3.5e-07 58.9 44 59.1
AT3G60300 Arabidopsis thaliana HOM05D006946 ORTHO05D008634 4.6e-07 58.5 44 56.8
A04p01710 Brassica napus HOM05D006946 ORTHO05D008634 4.6e-07 58.5 44 59.1
C04p32350 Brassica napus HOM05D006946 ORTHO05D008634 4.6e-07 58.5 44 59.1
FAN10G1802 Fragaria x ananassa HOM05D006946 ORTHO05D008634 4.6e-07 58.5 47 57.4
ATR0057G021 Amborella trichopoda HOM05D006946 ORTHO05D008634 7.8e-07 57.8 44 61.4
FAN06G0591 Fragaria x ananassa HOM05D006946 ORTHO05D008634 7.8e-07 57.8 47 55.3
FAN06G0853 Fragaria x ananassa HOM05D006946 ORTHO05D008634 7.8e-07 57.8 47 55.3
TWI14G0580 Tripterygium wilfordii HOM05D006946 ORTHO05D008634 7.8e-07 57.8 57 54.4
VMungo0331G1797 Vigna mungo HOM05D006946 ORTHO05D008634 7.8e-07 57.8 46 60.9
FvH4_7g10220 Fragaria vesca HOM05D006946 ORTHO05D008634 1.0e-06 57.4 47 55.3
Lj3g0014310 Lotus japonicus HOM05D006946 ORTHO05D008634 1.3e-06 57.0 79 43.0
Cc02_g25140 Coffea canephora HOM05D006946 ORTHO05D008634 1.7e-06 56.6 47 57.4
arahy.Tifrunner.gnm1.ann1.GB8G30 Arachis hypogaea HOM05D006946 ORTHO05D008634 2.3e-06 56.2 47 57.4
Potri.014G048000 Populus trichocarpa HOM05D006946 ORTHO05D008634 2.3e-06 56.2 38 63.2
Peaxi162Scf00475g00422 Petunia axillaris HOM05D000253 ORTHO05D000149 3.0e-06 55.8 44 56.8
Phvul.010G049700 Phaseolus vulgaris HOM05D006946 ORTHO05D008634 3.0e-06 55.8 46 58.7
arahy.Tifrunner.gnm1.ann1.4A1F8H Arachis hypogaea HOM05D006946 ORTHO05D008634 5.1e-06 55.1 47 57.4
ECA240G0199 Erigeron canadensis HOM05D006946 ORTHO05D008634 5.1e-06 55.1 44 56.8
TPR.G33124 Trifolium pratense HOM05D006946 ORTHO05D008634 6.6e-06 54.7 79 41.8


User provided reference genes

Program Settings