Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0551350 Oryza sativa ssp. japonica HOM05D005370 ORTHO05D006659 3.1e-28 127.9 69 100.0
Zm00001eb201750 Zea mays HOM05D005370 ORTHO05D006659 4.9e-18 94.0 61 78.7
Os11g0550900 Oryza sativa ssp. japonica HOM05D005370 ORTHO05D006659 6.9e-12 73.6 44 88.6
ClCG01G004480 Citrullus lanatus HOM05D005370 ORTHO05D006659 6.7e-07 57.0 61 45.9
MELO3C005475.2 Cucumis melo HOM05D005370 ORTHO05D006659 6.7e-07 57.0 61 45.9
Lsat_1_v5_gn_8_94841 Lactuca sativa HOM05D005370 ORTHO05D006659 8.7e-07 56.6 61 44.3
Cc01_g08030 Coffea canephora HOM05D005370 ORTHO05D006659 1.5e-06 55.8 61 44.3
HanXRQChr02g0032381 Helianthus annuus HOM05D005370 ORTHO05D006659 1.5e-06 55.8 61 42.6
ECA236G0510 Erigeron canadensis HOM05D005370 ORTHO05D006659 1.9e-06 55.5 61 42.6
PSO210G0029 Papaver somniferum HOM05D005370 ORTHO05D006659 1.9e-06 55.5 61 44.3
PSO238G0055 Papaver somniferum HOM05D005370 ORTHO05D006659 2.5e-06 55.1 61 42.6
Sed0023556 Sechium edule HOM05D005370 ORTHO05D006659 2.5e-06 55.1 61 45.9
TPR.G39035 Trifolium pratense HOM05D005370 ORTHO05D000069 2.5e-06 55.1 61 44.3
COL.COLO4_15774 Corchorus olitorius HOM05D005370 ORTHO05D006659 3.3e-06 54.7 61 42.6
FvH4_4g02310 Fragaria vesca HOM05D005370 ORTHO05D006659 3.3e-06 54.7 66 39.4
FAN12G2588 Fragaria x ananassa HOM05D005370 ORTHO05D006659 3.3e-06 54.7 66 39.4
FAN17G2982 Fragaria x ananassa HOM05D005370 ORTHO05D006659 3.3e-06 54.7 66 39.4
FAN22G1699 Fragaria x ananassa HOM05D005370 ORTHO05D006659 3.3e-06 54.7 66 39.4
Lj5g0014373 Lotus japonicus HOM05D005370 ORTHO05D006659 3.3e-06 54.7 61 42.6
Thecc.04G244800 Theobroma cacao HOM05D005370 ORTHO05D006659 3.3e-06 54.7 61 42.6
Gohir.A02G035301 Gossypium hirsutum HOM05D005370 ORTHO05D006659 4.3e-06 54.3 66 39.4
MSTRG.18281 Avicennia marina HOM05D005370 ORTHO05D006659 5.6e-06 53.9 61 45.9
Nn3g19501 Nelumbo nucifera HOM05D005370 ORTHO05D006659 5.6e-06 53.9 61 44.3
Potri.002G045500 Populus trichocarpa HOM05D005370 ORTHO05D006659 5.6e-06 53.9 61 42.6
Prupe.1G175900 Prunus persica HOM05D005370 ORTHO05D006659 5.6e-06 53.9 61 41.0
Ah.11g050020 Amaranthus hybridus HOM05D005370 ORTHO05D006659 7.4e-06 53.5 61 44.3
CSS0021022 Camellia sinensis var. sinensis HOM05D005370 ORTHO05D006659 7.4e-06 53.5 61 45.9
CsaV3_5G004690 Cucumis sativus L. HOM05D005370 ORTHO05D006659 7.4e-06 53.5 61 42.6
Gorai.005G046600 Gossypium raimondii HOM05D005370 ORTHO05D006659 7.4e-06 53.5 66 39.4
Nn1g02548 Nelumbo nucifera HOM05D005370 ORTHO05D000069 7.4e-06 53.5 61 44.3
Sabra02G0036500 Salix brachista HOM05D005370 ORTHO05D006659 7.4e-06 53.5 61 42.6
AUR62011949 Chenopodium quinoa HOM05D005370 ORTHO05D006659 9.6e-06 53.1 61 44.3
AUR62032263 Chenopodium quinoa HOM05D005370 ORTHO05D006659 9.6e-06 53.1 61 44.3
Ca_14753_v3 Cicer arietinum L. HOM05D005370 ORTHO05D006659 9.6e-06 53.1 61 41.0
Ca_24537_v3 Cicer arietinum L. HOM05D005370 ORTHO05D006659 9.6e-06 53.1 61 41.0
Lalb_Chr02g0142451 Lupinus albus HOM05D005370 ORTHO05D006659 9.6e-06 53.1 61 41.0
MBI15_g19756_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 9.6e-06 53.1 61 44.3
Nitab4.5_0001840g0120 Nicotiana tabacum HOM05D005370 ORTHO05D006659 9.6e-06 53.1 61 42.6
Nitab4.5_0002156g0030 Nicotiana tabacum HOM05D005370 ORTHO05D006659 9.6e-06 53.1 61 42.6
Phvul.007G177000 Phaseolus vulgaris HOM05D005370 ORTHO05D006659 9.6e-06 53.1 61 41.0


User provided reference genes

Program Settings