Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0550800 Oryza sativa ssp. japonica HOM05D006906 ORTHO05D008578 1.2e-62 243.0 128 100.0
CiPaw.15G153800 Carya illinoinensis HOM05D006906 ORTHO05D008578 3.1e-18 95.5 84 60.7
TAR628G1359 Trochodendron aralioides HOM05D006906 ORTHO05D008578 3.1e-18 95.5 85 62.4
Ciclev10002778m.g Citrus clementina HOM05D006906 ORTHO05D008578 9.1e-18 94.0 85 60.0
Manes.18G052450 Manihot esculenta HOM05D006906 ORTHO05D008578 9.1e-18 94.0 94 53.2
Duzib116G0588 Durio zibethinus HOM05D006906 ORTHO05D008578 1.6e-17 93.2 79 59.5
Ah.05g166860 Amaranthus hybridus HOM05D006906 ORTHO05D008578 2.6e-17 92.4 77 62.3
Cfa020715 Carpinus fangiana HOM05D006906 ORTHO05D008578 2.6e-17 92.4 67 64.2
Duzib116G0218 Durio zibethinus HOM05D006906 ORTHO05D008578 2.6e-17 92.4 78 60.3
PGR031G1810 Punica granatum HOM05D006906 ORTHO05D008578 3.5e-17 92.0 79 59.5
Dinv01221 Davidia involucrata HOM05D006906 ORTHO05D008578 4.5e-17 91.7 64 67.2
Duzib093G2206 Durio zibethinus HOM05D006906 ORTHO05D008578 4.5e-17 91.7 112 49.1
BcaB08g36735 Brassica carinata HOM05D006906 ORTHO05D008578 7.7e-17 90.9 69 65.2
BolC2t06848H Brassica oleracea HOM05D006906 ORTHO05D008578 7.7e-17 90.9 69 60.9
C09p59250 Brassica napus HOM05D006906 ORTHO05D008578 1.0e-16 90.5 69 65.2
BolC9t58765H Brassica oleracea HOM05D006906 ORTHO05D008578 1.0e-16 90.5 69 65.2
CDE01G0046 Ceratophyllum demersum HOM05D006906 ORTHO05D008578 1.3e-16 90.1 65 64.6
Gohir.A05G213900 Gossypium hirsutum HOM05D006906 ORTHO05D008578 1.3e-16 90.1 104 51.9
THA.LOC104806946 Tarenaya hassleriana HOM05D006906 ORTHO05D008578 1.3e-16 90.1 95 58.9
C03p09940 Brassica napus HOM05D006906 ORTHO05D008578 1.7e-16 89.7 93 53.8
Prupe.1G543500 Prunus persica HOM05D006906 ORTHO05D008578 1.7e-16 89.7 110 49.1
MELO3C003483.2 Cucumis melo HOM05D006906 ORTHO05D008578 2.2e-16 89.4 60 71.7
Sp6g26380 Schrenkiella parvula HOM05D006906 ORTHO05D008578 2.2e-16 89.4 101 51.5
BcaC03g13555 Brassica carinata HOM05D006906 ORTHO05D008578 2.9e-16 89.0 67 61.2
A02p04550 Brassica napus HOM05D006906 ORTHO05D008578 2.9e-16 89.0 69 59.4
BraA10t44222Z Brassica rapa HOM05D006906 ORTHO05D008578 2.9e-16 89.0 75 60.0
ClCG11G014950 Citrullus lanatus HOM05D006906 ORTHO05D008578 2.9e-16 89.0 78 60.3
Hma1.2p1_1068F.1_g254010 Hydrangea macrophylla HOM05D006906 ORTHO05D008578 2.9e-16 89.0 110 52.7
Sc26g0004280 Simmondsia chinensis HOM05D006906 ORTHO05D008578 2.9e-16 89.0 78 61.5
Sed0015154 Sechium edule HOM05D006906 ORTHO05D008578 3.8e-16 88.6 102 49.0
BcaB01g04920 Brassica carinata HOM05D006906 ORTHO05D008578 5.0e-16 88.2 72 58.3
CSS0004987 Camellia sinensis var. sinensis HOM05D006906 ORTHO05D008578 5.0e-16 88.2 57 71.9
QL12p040639 Quercus lobata HOM05D006906 ORTHO05D008578 5.0e-16 88.2 102 52.0
EL10Ac1g02326 Beta vulgaris HOM05D006906 ORTHO05D008578 6.5e-16 87.8 93 51.6
Thhalv10015071m.g Eutrema salsugineum HOM05D006906 ORTHO05D008578 6.5e-16 87.8 67 61.2
CANSAT01G2303 Cannabis sativa HOM05D006906 ORTHO05D008578 8.5e-16 87.4 74 62.2
MBI16_g41120_MAGBIO Magnolia biondii HOM05D006906 ORTHO05D008578 8.5e-16 87.4 78 60.3
Potri.002G112500 Populus trichocarpa HOM05D006906 ORTHO05D008578 8.5e-16 87.4 87 54.0
Sabra02G0088700 Salix brachista HOM05D006906 ORTHO05D008578 8.5e-16 87.4 118 44.9
BraA02t05416Z Brassica rapa HOM05D006906 ORTHO05D008578 1.1e-15 87.0 68 60.3
Gorai.009G224100 Gossypium raimondii HOM05D006906 ORTHO05D008578 1.1e-15 87.0 102 52.0
TWI56G0746 Tripterygium wilfordii HOM05D006906 ORTHO05D008578 1.1e-15 87.0 98 52.0
A10p21600 Brassica napus HOM05D006906 ORTHO05D008578 1.5e-15 86.7 74 59.5
MD08G1211600 Malus domestica HOM05D006906 ORTHO05D008578 1.5e-15 86.7 72 61.1
Aqoxy6G01513 Aquilegia oxysepala HOM05D006906 ORTHO05D008578 2.5e-15 85.9 78 59.0
Thecc.08G080900 Theobroma cacao HOM05D006906 ORTHO05D008578 2.5e-15 85.9 94 51.1
Haze_19024 Corylus avellana HOM05D006906 ORTHO05D008578 3.2e-15 85.5 66 62.1
Eucgr.F00111 Eucalyptus grandis HOM05D006906 ORTHO05D008578 3.2e-15 85.5 57 68.4
BcaC04g18752 Brassica carinata HOM05D006906 ORTHO05D008578 4.2e-15 85.1 91 50.5
BraA03t10177Z Brassica rapa HOM05D006906 ORTHO05D008578 4.2e-15 85.1 94 53.2
Gohir.D05G217300 Gossypium hirsutum HOM05D006906 ORTHO05D008578 4.2e-15 85.1 102 51.0
Prupe.3G080900 Prunus persica HOM05D006906 ORTHO05D008578 4.2e-15 85.1 80 55.0
COL.COLO4_35364 Corchorus olitorius HOM05D006906 ORTHO05D008578 7.2e-15 84.3 50 74.0
BcaB01g05160 Brassica carinata HOM05D006906 ORTHO05D008578 1.2e-14 83.6 96 50.0
BolC3t13482H Brassica oleracea HOM05D006906 ORTHO05D008578 1.2e-14 83.6 96 50.0
Carub.0006s1610 Capsella rubella HOM05D006906 ORTHO05D008578 1.2e-14 83.6 53 69.8
TWI12G0785 Tripterygium wilfordii HOM05D006906 ORTHO05D008578 1.2e-14 83.6 72 58.3
Cpa.g.sc160.12 Carica papaya HOM05D006906 ORTHO05D008578 1.6e-14 83.2 90 48.9
SGA_v2.0_scaffold152G36871 Striga asiatica HOM05D006906 ORTHO05D008578 1.6e-14 83.2 100 52.0
Atru.chr13.910 Acer truncatum HOM05D006906 ORTHO05D008578 2.1e-14 82.8 69 58.0
Aa31LG11G11710 Aethionema arabicum HOM05D006906 ORTHO05D008578 2.7e-14 82.4 104 46.2
AT5G17870 Arabidopsis thaliana HOM05D006906 ORTHO05D008578 2.7e-14 82.4 53 67.9
ECA246G4410 Erigeron canadensis HOM05D006906 ORTHO05D008578 2.7e-14 82.4 50 74.0
vmacro04612 Vaccinium macrocarpon HOM05D006906 ORTHO05D008578 2.7e-14 82.4 113 46.0
Actinidia19594 Actinidia chinensis HOM05D006906 ORTHO05D008578 3.6e-14 82.0 79 51.9
Glyma.06G089700 Glycine max HOM05D006906 ORTHO05D008578 3.6e-14 82.0 74 58.1
Phvul.009G113500 Phaseolus vulgaris HOM05D006906 ORTHO05D008578 3.6e-14 82.0 80 57.5
AL6G28970 Arabidopsis lyrata HOM05D006906 ORTHO05D008578 4.7e-14 81.6 72 56.9
DCAR_012832 Daucus carota HOM05D006906 ORTHO05D008578 4.7e-14 81.6 94 54.3
MD15G1394500 Malus domestica HOM05D006906 ORTHO05D008578 4.7e-14 81.6 70 58.6
Rhsim07G0215600 Rhododendron simsii HOM05D006906 ORTHO05D008578 8.0e-14 80.9 128 46.1
CARHR195300 Cardamine hirsuta HOM05D006906 ORTHO05D008578 1.0e-13 80.5 97 49.5
ATR0767G231 Amborella trichopoda HOM05D006906 ORTHO05D008578 2.3e-13 79.3 47 78.7
PSO675G4379 Papaver somniferum HOM05D006906 ORTHO05D008578 2.3e-13 79.3 79 59.5
PSO541G5790 Papaver somniferum HOM05D006906 ORTHO05D008578 3.0e-13 79.0 70 62.9
unitig_21.g20623 Utricularia gibba HOM05D006906 ORTHO05D008578 3.0e-13 79.0 64 62.5
CAN.G416.50 Capsicum annuum HOM05D006906 ORTHO05D008578 5.2e-13 78.2 69 53.6
FAN08G0950 Fragaria x ananassa HOM05D006906 ORTHO05D008578 5.2e-13 78.2 116 45.7
MSTRG.17420 Avicennia marina HOM05D006906 ORTHO05D008578 6.8e-13 77.8 84 56.0
RcHm_v2.0_Chr7g0232161 Rosa chinensis HOM05D006906 ORTHO05D008578 6.8e-13 77.8 124 41.9
Lsat_1_v5_gn_6_108161 Lactuca sativa HOM05D006906 ORTHO05D008578 8.8e-13 77.4 93 48.4
SalBow2G0068 Salvia bowleyana HOM05D006906 ORTHO05D008578 8.8e-13 77.4 72 55.6
TPR.G12407 Trifolium pratense HOM05D006906 ORTHO05D008578 8.8e-13 77.4 72 55.6
FvH4_5g33440 Fragaria vesca HOM05D006906 ORTHO05D008578 1.2e-12 77.0 112 44.6
FAN18G0347 Fragaria x ananassa HOM05D006906 ORTHO05D008578 1.2e-12 77.0 112 44.6
HanXRQChr16g0510751 Helianthus annuus HOM05D006906 ORTHO05D008578 1.2e-12 77.0 57 61.4
HanXRQChr16g0510761 Helianthus annuus HOM05D006906 ORTHO05D008578 1.2e-12 77.0 57 61.4
Nitab4.5_0001614g0100 Nicotiana tabacum HOM05D006906 ORTHO05D008578 2.6e-12 75.9 71 54.9
AUR62034964 Chenopodium quinoa HOM05D006906 ORTHO05D008578 3.4e-12 75.5 83 51.8
Medtr3g110640 Medicago truncatula HOM05D006906 ORTHO05D008578 3.4e-12 75.5 62 62.9
Nitab4.5_0002415g0040 Nicotiana tabacum HOM05D006906 ORTHO05D008578 3.4e-12 75.5 88 48.9
AUR62035774 Chenopodium quinoa HOM05D006906 ORTHO05D008578 4.4e-12 75.1 68 57.4
Peaxi162Scf00628g00053 Petunia axillaris HOM05D006906 ORTHO05D008578 7.5e-12 74.3 90 50.0
Sopen04g030750 Solanum pennellii HOM05D006906 ORTHO05D008578 7.5e-12 74.3 74 51.4
Psat1g221800 Pisum sativum HOM05D006906 ORTHO05D008578 9.8e-12 73.9 97 47.4
PGSC0003DMG400004936 Solanum tuberosum HOM05D006906 ORTHO05D008578 1.3e-11 73.6 72 52.8
BcaC04g18751 Brassica carinata HOM05D006906 ORTHO05D008578 3.7e-11 72.0 56 62.5
C09p59230 Brassica napus HOM05D006906 ORTHO05D008578 3.7e-11 72.0 56 62.5
Solyc04g077130.1 Solanum lycopersicum HOM05D006906 ORTHO05D008578 4.8e-11 71.6 98 43.9
Prupe.8G111300 Prunus persica HOM05D006906 ORTHO05D008578 1.1e-10 70.5 43 74.4
Thhalv10009816m.g Eutrema salsugineum HOM05D006906 ORTHO05D008578 7.0e-10 67.8 51 64.7
BolC9t58763H Brassica oleracea HOM05D006906 ORTHO05D008578 1.2e-09 67.0 68 52.9
Migut.N02816 Erythranthe guttata HOM05D006906 ORTHO05D008578 7.7e-09 64.3 69 53.6
HPP92_027715 Vanilla planifolia HOM05D006906 ORTHO05D008578 2.2e-08 62.8 79 46.8
HPP92_027718 Vanilla planifolia HOM05D006906 ORTHO05D008578 1.9e-07 59.7 109 41.3
CBR_g48804 Chara braunii HOM05D006906 ORTHO05D008578 4.2e-07 58.5 53 52.8
Nn5g30714 Nelumbo nucifera HOM05D006906 ORTHO05D008578 5.5e-07 58.2 53 54.7
Mapoly0090s0093 Marchantia polymorpha HOM05D006906 ORTHO05D008578 1.6e-06 56.6 46 58.7
Pp3c3_11690 Physcomitrium patens HOM05D006906 ORTHO05D008578 2.7e-06 55.8 101 42.6


User provided reference genes

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