Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0549900 Oryza sativa ssp. japonica HOM05D005311 ORTHO05D006160 1.4e-73 280.0 205 100.0
Zm00001eb201730 Zea mays HOM05D005311 ORTHO05D006160 2.5e-54 216.1 148 87.2
Manes.07G056400 Manihot esculenta HOM05D005311 ORTHO05D006160 4.5e-35 152.1 153 58.2
CSS0009611 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 3.8e-34 149.1 152 57.2
Gorai.005G229500 Gossypium raimondii HOM05D005311 ORTHO05D006160 3.8e-34 149.1 153 57.5
GSVIVG01037044001 Vitis vinifera HOM05D005311 ORTHO05D006160 8.5e-34 147.9 152 59.9
Actinidia00352 Actinidia chinensis HOM05D005311 ORTHO05D006160 1.1e-33 147.5 154 55.8
Gohir.A03G180600 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.1e-33 147.5 153 56.9
Gohir.D02G203104 Gossypium hirsutum HOM05D005311 ORTHO05D006160 1.1e-33 147.5 153 56.9
TAR625G0307 Trochodendron aralioides HOM05D005311 ORTHO05D006160 1.1e-33 147.5 152 55.3
arahy.Tifrunner.gnm1.ann1.KVB0K0 Arachis hypogaea HOM05D005311 ORTHO05D006160 5.5e-33 145.2 153 56.9
arahy.Tifrunner.gnm1.ann1.QK2693 Arachis hypogaea HOM05D005311 ORTHO05D006160 5.5e-33 145.2 153 56.9
ATR0767G087 Amborella trichopoda HOM05D005311 ORTHO05D006160 1.2e-32 144.1 148 58.1
Rhsim11G0150000 Rhododendron simsii HOM05D005311 ORTHO05D006160 1.2e-32 144.1 149 55.7
Duzib052G0370 Durio zibethinus HOM05D005311 ORTHO05D006160 2.1e-32 143.3 148 56.1
Actinidia02445 Actinidia chinensis HOM05D005311 ORTHO05D006160 2.7e-32 142.9 154 54.5
Nn6g32054 Nelumbo nucifera HOM05D005311 ORTHO05D006160 2.7e-32 142.9 153 53.6
THA.LOC104815219 Tarenaya hassleriana HOM05D005311 ORTHO05D006160 2.7e-32 142.9 146 57.5
COL.COLO4_32478 Corchorus olitorius HOM05D005311 ORTHO05D006160 3.6e-32 142.5 154 56.5
Lj5g0014269 Lotus japonicus HOM05D005311 ORTHO05D006160 3.6e-32 142.5 151 59.6
Ca_11020_v3 Cicer arietinum L. HOM05D005311 ORTHO05D006160 1.4e-31 140.6 148 56.1
Medtr1g105970 Medicago truncatula HOM05D005311 ORTHO05D006160 1.8e-31 140.2 151 53.6
TWI14G0308 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 1.8e-31 140.2 153 53.6
MD05G1106900 Malus domestica HOM05D005311 ORTHO05D006160 2.3e-31 139.8 151 55.0
ClCG10G010010 Citrullus lanatus HOM05D005311 ORTHO05D006160 3.0e-31 139.4 146 56.8
Lalb_Chr21g0307981 Lupinus albus HOM05D005311 ORTHO05D006160 5.2e-31 138.7 151 53.0
Glyma.10G255200 Glycine max HOM05D005311 ORTHO05D006160 6.7e-31 138.3 150 55.3
TAR376G1236 Trochodendron aralioides HOM05D000442 ORTHO05D006160 8.8e-31 137.9 147 51.7
Ciclev10029272m.g Citrus clementina HOM05D005311 ORTHO05D006160 1.5e-30 137.1 153 56.2
Lalb_Chr02g0144871 Lupinus albus HOM05D005311 ORTHO05D006160 2.0e-30 136.7 150 56.7
SalBow6G1857 Salvia bowleyana HOM05D005311 ORTHO05D006160 2.0e-30 136.7 152 55.3
Sc18g0007330 Simmondsia chinensis HOM05D005311 ORTHO05D006160 2.0e-30 136.7 150 56.7
Thecc.02G120600 Theobroma cacao HOM05D005311 ORTHO05D006160 2.0e-30 136.7 153 52.9
Cc02_g20120 Coffea canephora HOM05D005311 ORTHO05D006160 2.6e-30 136.3 147 54.4
Glyma.20G136100 Glycine max HOM05D005311 ORTHO05D006160 2.6e-30 136.3 148 54.7
Gohir.D12G019000 Gossypium hirsutum HOM05D005311 ORTHO05D006160 2.6e-30 136.3 151 54.3
Gorai.008G019300 Gossypium raimondii HOM05D005311 ORTHO05D006160 2.6e-30 136.3 151 54.3
Phvul.007G047500 Phaseolus vulgaris HOM05D005311 ORTHO05D006160 2.6e-30 136.3 151 53.6
Potri.009G084800 Populus trichocarpa HOM05D005311 ORTHO05D006160 2.6e-30 136.3 153 53.6
Thhalv10011774m.g Eutrema salsugineum HOM05D005311 ORTHO05D006160 3.3e-30 136.0 149 54.4
TWI59G0049 Tripterygium wilfordii HOM05D005311 ORTHO05D006160 3.3e-30 136.0 148 54.1
Carub.0001s3920 Capsella rubella HOM05D005311 ORTHO05D006160 4.4e-30 135.6 145 53.8
Lj9A337G44 Lonicera japonica HOM05D005311 ORTHO05D006160 4.4e-30 135.6 150 52.7
SGA_v2.0_scaffold32G12981 Striga asiatica HOM05D005311 ORTHO05D006160 4.4e-30 135.6 153 53.6
VMungo0720G0066 Vigna mungo HOM05D005311 ORTHO05D006160 7.5e-30 134.8 151 53.6
AT1G50020 Arabidopsis thaliana HOM05D005311 ORTHO05D006160 1.3e-29 134.0 147 53.1
CANSAT25G3378 Cannabis sativa HOM05D005311 ORTHO05D006160 2.2e-29 133.3 152 52.0
Gohir.A12G018400 Gossypium hirsutum HOM05D005311 ORTHO05D006160 2.2e-29 133.3 151 53.0
FvH4_2g03130 Fragaria vesca HOM05D005311 ORTHO05D006160 3.7e-29 132.5 152 52.6
FAN20G1889 Fragaria x ananassa HOM05D005311 ORTHO05D006160 3.7e-29 132.5 152 52.6
FAN24G0492 Fragaria x ananassa HOM05D005311 ORTHO05D006160 3.7e-29 132.5 152 52.6
MD10G1111900 Malus domestica HOM05D005311 ORTHO05D006160 3.7e-29 132.5 151 53.0
Sp1g36880 Schrenkiella parvula HOM05D005311 ORTHO05D006160 3.7e-29 132.5 149 53.7
GSVIVG01009264001 Vitis vinifera HOM05D005311 ORTHO05D006160 3.7e-29 132.5 137 54.0
AL1G57590 Arabidopsis lyrata HOM05D005311 ORTHO05D006160 4.8e-29 132.1 147 52.4
MELO3C018026.2 Cucumis melo HOM05D005311 ORTHO05D006160 4.8e-29 132.1 150 52.7
FAN27G0024 Fragaria x ananassa HOM05D005311 ORTHO05D006160 4.8e-29 132.1 152 52.6
QL11p029204 Quercus lobata HOM05D005311 ORTHO05D006160 4.8e-29 132.1 153 51.6
Hund00418 Selenicereus undatus HOM05D005311 ORTHO05D006160 4.8e-29 132.1 145 52.4
Aa31LG10G4090 Aethionema arabicum HOM05D002370 ORTHO05D003878 6.3e-29 131.7 150 51.3
BolC3t21257H Brassica oleracea HOM05D005311 ORTHO05D006160 8.2e-29 131.3 149 53.0
BraA08t32371Z Brassica rapa HOM05D005311 ORTHO05D006160 8.2e-29 131.3 148 52.7
Sed0009957 Sechium edule HOM05D005311 ORTHO05D006160 8.2e-29 131.3 147 54.4
vmacro01940 Vaccinium macrocarpon HOM05D000211 ORTHO05D002517 8.2e-29 131.3 176 48.3
Aqoxy5G01939 Aquilegia oxysepala HOM05D005311 ORTHO05D006160 1.1e-28 131.0 152 51.3
MSTRG.16668 Avicennia marina HOM05D005311 ORTHO05D006160 1.1e-28 131.0 153 54.9
CARHR040130 Cardamine hirsuta HOM05D005311 ORTHO05D006160 1.1e-28 131.0 147 53.7
C03p89430 Brassica napus HOM05D005311 ORTHO05D006160 1.4e-28 130.6 145 53.8
Eucgr.I02500 Eucalyptus grandis HOM05D005311 ORTHO05D006160 1.4e-28 130.6 147 55.1
PSO210G6612 Papaver somniferum HOM05D005311 ORTHO05D006160 1.4e-28 130.6 153 54.2
BcaB07g33454 Brassica carinata HOM05D005311 ORTHO05D006160 1.8e-28 130.2 142 54.9
CiPaw.05G021200 Carya illinoinensis HOM05D005311 ORTHO05D006160 1.8e-28 130.2 150 51.3
Peaxi162Scf00016g03127 Petunia axillaris HOM05D005311 ORTHO05D006160 1.8e-28 130.2 147 53.1
CsaV3_4G000050 Cucumis sativus L. HOM05D005311 ORTHO05D006160 2.4e-28 129.8 152 52.6
FAN15G1540 Fragaria x ananassa HOM05D005311 ORTHO05D006160 2.4e-28 129.8 146 53.4
Potri.001G289400 Populus trichocarpa HOM05D005311 ORTHO05D006160 2.4e-28 129.8 153 51.6
Atru.chr5.2262 Acer truncatum HOM05D005311 ORTHO05D006160 3.1e-28 129.4 150 50.7
A08p03390 Brassica napus HOM05D005311 ORTHO05D006160 3.1e-28 129.4 150 52.0
BcaC08g43180 Brassica carinata HOM05D005311 ORTHO05D006160 5.3e-28 128.6 142 54.2
BolC6t35609H Brassica oleracea HOM05D005311 ORTHO05D006160 5.3e-28 128.6 142 54.2
Lalb_Chr16g0376301 Lupinus albus HOM05D005311 ORTHO05D006160 5.3e-28 128.6 148 54.7
A06p03410 Brassica napus HOM05D005311 ORTHO05D006160 7.0e-28 128.3 142 54.2
BraA06t23549Z Brassica rapa HOM05D005311 ORTHO05D006160 7.0e-28 128.3 142 54.2
PGSC0003DMG400025735 Solanum tuberosum HOM05D005311 ORTHO05D006160 7.0e-28 128.3 147 53.1
CAN.G606.76 Capsicum annuum HOM05D005311 ORTHO05D006160 9.1e-28 127.9 147 52.4
TAR628G1269 Trochodendron aralioides HOM05D005311 ORTHO05D006160 9.1e-28 127.9 153 48.4
Solyc01g106790.3 Solanum lycopersicum HOM05D005311 ORTHO05D006160 1.2e-27 127.5 150 52.7
Sopen01g049100 Solanum pennellii HOM05D005311 ORTHO05D006160 1.2e-27 127.5 147 52.4
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 2.0e-27 126.7 152 50.7
Ah.01g024570 Amaranthus hybridus HOM05D005311 ORTHO05D006160 2.0e-27 126.7 140 55.0
HanXRQChr03g0073011 Helianthus annuus HOM05D005311 ORTHO05D006160 2.7e-27 126.3 141 54.6
Nitab4.5_0009103g0020 Nicotiana tabacum HOM05D005311 ORTHO05D006160 2.7e-27 126.3 147 53.1
C06p04800 Brassica napus HOM05D005311 ORTHO05D006160 3.5e-27 125.9 142 53.5
RcHm_v2.0_Chr6g0248001 Rosa chinensis HOM05D005311 ORTHO05D006160 3.5e-27 125.9 151 51.0
Nitab4.5_0000772g0050 Nicotiana tabacum HOM05D005311 ORTHO05D006160 5.9e-27 125.2 147 53.1
PSO447G0012 Papaver somniferum HOM05D005311 ORTHO05D006160 5.9e-27 125.2 151 53.0
Lsat_1_v5_gn_9_113920 Lactuca sativa HOM05D005311 ORTHO05D006160 1.3e-26 124.0 149 51.0
Sabra16G0181000 Salix brachista HOM05D002370 ORTHO05D003878 1.3e-26 124.0 153 48.4
Dinv09534 Davidia involucrata HOM05D000211 ORTHO05D002517 2.2e-26 123.2 118 59.3
AUR62027028 Chenopodium quinoa HOM05D005311 ORTHO05D006160 6.5e-26 121.7 144 52.8
AUR62030871 Chenopodium quinoa HOM05D005311 ORTHO05D006160 6.5e-26 121.7 144 52.8
Lsat_1_v5_gn_7_84560 Lactuca sativa HOM05D005311 ORTHO05D006160 6.5e-26 121.7 149 49.7
ECA240G0703 Erigeron canadensis HOM05D005311 ORTHO05D006160 1.9e-25 120.2 149 50.3
HanXRQChr15g0495651 Helianthus annuus HOM05D005311 ORTHO05D006160 1.9e-25 120.2 149 50.3
ECA236G2995 Erigeron canadensis HOM05D000211 ORTHO05D002517 5.5e-25 118.6 148 50.7
Cpa.g.sc106.28 Carica papaya HOM05D005311 ORTHO05D006160 7.2e-25 118.2 201 42.3
CDE02G2678 Ceratophyllum demersum HOM05D005427 ORTHO05D006160 7.2e-25 118.2 148 52.0
Migut.B00474 Erythranthe guttata HOM05D005311 ORTHO05D006160 9.4e-25 117.9 149 50.3
CDE04G0288 Ceratophyllum demersum HOM05D005311 ORTHO05D006160 2.7e-24 116.3 80 72.5
Lj5A221T62 Lonicera japonica HOM05D005311 ORTHO05D006160 2.3e-23 113.2 145 48.3
BcaB04g17278 Brassica carinata HOM05D005311 ORTHO05D006160 4.0e-23 112.5 135 50.4
DCAR_021939 Daucus carota HOM05D005311 ORTHO05D006160 2.6e-22 109.8 149 49.0
Oeu037294.1 Olea europaea HOM05D005311 ORTHO05D006160 3.4e-22 109.4 142 50.7
unitig_61.g26039 Utricularia gibba HOM05D005311 ORTHO05D006160 4.8e-21 105.5 142 47.2
SMO118G0105 Selaginella moellendorffii HOM05D005311 ORTHO05D006160 7.0e-20 101.7 164 43.3
AagrBONN_evm.TU.Sc2ySwM_340.346 Anthoceros agrestis HOM05D005311 ORTHO05D006160 2.0e-19 100.1 158 43.7
unitig_60.g25463 Utricularia gibba HOM05D005311 ORTHO05D006160 7.7e-19 98.2 136 44.1
Mapoly0159s0003 Marchantia polymorpha HOM05D005311 ORTHO05D006160 2.3e-18 96.7 150 43.3
Pp3c9_20640 Physcomitrium patens HOM05D005311 ORTHO05D006160 1.1e-17 94.4 139 45.3
arahy.Tifrunner.gnm1.ann1.YXS8EF Arachis hypogaea HOM05D005311 ORTHO05D006160 9.5e-17 91.3 145 44.1
Psat6g210680 Pisum sativum HOM05D005311 ORTHO05D006160 6.8e-15 85.1 113 50.4
Prupe.8G151000 Prunus persica HOM05D005311 ORTHO05D006160 2.0e-14 83.6 113 51.3
TPR.G21150 Trifolium pratense HOM05D005311 ORTHO05D006160 3.4e-14 82.8 113 48.7
Sabra09G0065400 Salix brachista HOM05D000308 ORTHO05D002517 3.7e-13 79.3 119 50.4
EL10Ac9g22172 Beta vulgaris HOM05D005311 ORTHO05D006160 6.3e-13 78.6 112 52.7
Duzib132G0391 Durio zibethinus HOM05D005311 ORTHO05D006160 1.1e-12 77.8 153 38.6
PGR142G3492 Punica granatum HOM05D005311 ORTHO05D006160 4.1e-12 75.9 147 38.8
Oeu025305.1 Olea europaea HOM05D005311 ORTHO05D006160 2.7e-11 73.2 105 50.5
Oeu037691.1 Olea europaea HOM05D005311 ORTHO05D006160 4.5e-11 72.4 50 76.0
CBR_g12748 Chara braunii HOM05D000019 ORTHO05D000048 5.0e-10 68.9 77 46.8
Cre14.g614000 Chlamydomonas reinhardtii HOM05D005311 ORTHO05D006160 8.6e-10 68.2 79 50.6
HPP92_006035 Vanilla planifolia HOM05D005311 ORTHO05D006160 2.5e-09 66.6 95 52.6
arahy.Tifrunner.gnm1.ann1.YSC4AN Arachis hypogaea HOM05D005311 ORTHO05D006160 4.0e-07 59.3 140 35.7
CSS0010436 Camellia sinensis var. sinensis HOM05D005311 ORTHO05D006160 2.6e-06 56.6 38 65.8
CARHR113150 Cardamine hirsuta HOM05D005311 ORTHO05D006160 2.6e-06 56.6 50 56.0


User provided reference genes

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