Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0549665 Oryza sativa ssp. japonica HOM05D012024 ORTHO05D012692 2.2e-268 928.3 447 100.0
Os08g0363000 Oryza sativa ssp. japonica HOM05D012024 ORTHO05D012692 4.2e-102 375.9 447 47.0
Os03g0113200 Oryza sativa ssp. japonica HOM05D012024 ORTHO05D012692 1.6e-101 374.0 459 47.3
Os07g0177000 Oryza sativa ssp. japonica HOM05D012024 ORTHO05D012692 4.3e-91 339.3 431 44.5
Os04g0486300 Oryza sativa ssp. japonica HOM05D012024 ORTHO05D012692 4.5e-88 329.3 417 44.1
Os01g0939200 Oryza sativa ssp. japonica HOM05D012024 ORTHO05D298849 3.1e-73 280.0 380 43.4
Os11g0231400 Oryza sativa ssp. japonica HOM05D012024 ORTHO05D012692 4.5e-64 249.6 422 40.3
Os03g0792300 Oryza sativa ssp. japonica HOM05D012024 ORTHO05D012692 7.1e-25 119.4 237 34.6
Os07g0591300 Oryza sativa ssp. japonica HOM05D012024 ORTHO05D012692 3.5e-24 117.1 162 40.1
Os07g0578125 Oryza sativa ssp. japonica HOM05D012024 ORTHO05D012692 1.0e-23 115.5 322 31.1
Os10g0568000 Oryza sativa ssp. japonica HOM05D012024 ORTHO05D012692 2.4e-20 104.4 220 35.9
Os07g0530400 Oryza sativa ssp. japonica HOM05D012024 ORTHO05D012692 1.3e-18 98.6 268 32.5
Os08g0285100 Oryza sativa ssp. japonica HOM05D012024 ORTHO05D012692 7.8e-16 89.4 136 39.7
Os04g0279700 Oryza sativa ssp. japonica HOM05D012024 ORTHO05D012692 1.0e-15 89.0 205 34.6
Zm00001eb318130 Zea mays HOM05D026349 ORTHO05D012692 8.7e-15 85.9 140 39.3
Zm00001eb318110 Zea mays HOM05D026349 ORTHO05D012692 1.9e-14 84.7 140 38.6
Os05g0123400 Oryza sativa ssp. japonica HOM05D012024 ORTHO05D012692 9.0e-12 75.9 217 30.9
Zm00001eb330670 Zea mays HOM05D039943 ORTHO05D012692 9.0e-12 75.9 206 29.6
Cfa014025 Carpinus fangiana HOM05D000151 ORTHO05D000074 5.8e-11 73.2 221 30.3
PGSC0003DMG400012271 Solanum tuberosum HOM05D000151 ORTHO05D000074 1.7e-10 71.6 288 26.0
Sopen08g030770 Solanum pennellii HOM05D000151 ORTHO05D000074 6.4e-10 69.7 324 25.3
TWI56G0047 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 8.4e-10 69.3 232 24.6
Dinv38967 Davidia involucrata HOM05D000151 ORTHO05D000074 7.1e-09 66.2 331 23.3
Dinv38970 Davidia involucrata HOM05D000151 ORTHO05D000074 1.6e-08 65.1 331 23.3
TAR636G2429 Trochodendron aralioides HOM05D000151 ORTHO05D000074 3.5e-08 63.9 221 24.9
Zm00001eb302450 Zea mays HOM05D026349 ORTHO05D012692 3.5e-08 63.9 156 26.9
TAR371G0808 Trochodendron aralioides HOM05D000151 ORTHO05D000074 4.6e-08 63.5 327 23.9
FAN12G0105 Fragaria x ananassa HOM05D007346 ORTHO05D009044 6.0e-08 63.2 237 24.9
FvH4_4g01970 Fragaria vesca HOM05D007346 ORTHO05D009044 7.9e-08 62.8 229 25.8
Rhsim11G0176200 Rhododendron simsii HOM05D000151 ORTHO05D000074 1.0e-07 62.4 227 23.3
Eucgr.F03527 Eucalyptus grandis HOM05D000151 ORTHO05D000074 1.3e-07 62.0 218 28.9
TAR362G0800 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.3e-07 62.0 210 27.6
Sopen04g025070 Solanum pennellii HOM05D000151 ORTHO05D000074 2.3e-07 61.2 223 25.1
TAR626G1713 Trochodendron aralioides HOM05D000151 ORTHO05D000074 2.3e-07 61.2 249 25.7
TAR636G2284 Trochodendron aralioides HOM05D000151 ORTHO05D000074 2.3e-07 61.2 229 24.9
TAR636G2694 Trochodendron aralioides HOM05D000151 ORTHO05D000074 2.3e-07 61.2 229 24.9
MD15G1005500 Malus domestica HOM05D000151 ORTHO05D000074 3.0e-07 60.8 348 24.7
PGSC0003DMG400001765 Solanum tuberosum HOM05D000151 ORTHO05D000074 3.9e-07 60.5 331 25.4
TAR626G0819 Trochodendron aralioides HOM05D000151 ORTHO05D000074 3.9e-07 60.5 236 27.5
Peaxi162Scf00074g00077 Petunia axillaris HOM05D000151 ORTHO05D000074 8.7e-07 59.3 343 22.2
FAN20G1383 Fragaria x ananassa HOM05D000151 ORTHO05D000074 1.1e-06 58.9 349 24.1
TAR636G2826 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.5e-06 58.5 200 28.0
RcHm_v2.0_Chr6g0303821 Rosa chinensis HOM05D000151 ORTHO05D000074 1.9e-06 58.2 356 24.7
TAR636G1620 Trochodendron aralioides HOM05D000151 ORTHO05D000074 3.3e-06 57.4 229 24.5
Solyc08g082510.1 Solanum lycopersicum HOM05D000151 ORTHO05D000074 4.3e-06 57.0 327 23.9
PGSC0003DMG400040058 Solanum tuberosum HOM05D000151 ORTHO05D000074 4.3e-06 57.0 335 23.9
MSTRG.1137 Avicennia marina HOM05D000151 ORTHO05D000074 5.6e-06 56.6 140 35.0
PGSC0003DMG400018188 Solanum tuberosum HOM05D000151 ORTHO05D000074 5.6e-06 56.6 136 28.7
Zm00001eb272730 Zea mays HOM05D000151 ORTHO05D000074 5.6e-06 56.6 144 30.6
Dinv28403 Davidia involucrata HOM05D000151 ORTHO05D000074 9.6e-06 55.8 350 21.7
Os10g0161700 Oryza sativa ssp. japonica HOM05D000151 ORTHO05D000074 9.6e-06 55.8 137 33.6
Sopen08g030590 Solanum pennellii HOM05D000151 ORTHO05D000074 9.6e-06 55.8 231 25.1


User provided reference genes

Program Settings