Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0549650 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 2.8e-181 638.6 366 100.0
Zm00001eb201720 Zea mays HOM05D005903 ORTHO05D007293 1.3e-114 417.2 238 84.5
Os11g0549690 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 1.3e-93 347.4 169 97.0
HPP92_021274 Vanilla planifolia HOM05D005903 ORTHO05D007293 1.9e-84 317.0 219 68.5
TAR624G0428 Trochodendron aralioides HOM05D005903 ORTHO05D007293 5.2e-82 308.9 233 65.7
Eucgr.A00192 Eucalyptus grandis HOM05D005903 ORTHO05D007293 8.2e-80 301.6 235 63.8
Dinv07001 Davidia involucrata HOM05D005903 ORTHO05D007293 1.4e-79 300.8 213 66.2
Gohir.A11G047300 Gossypium hirsutum HOM05D005903 ORTHO05D007293 1.4e-79 300.8 215 65.6
BcaB01g00896 Brassica carinata HOM05D005903 ORTHO05D007293 5.3e-79 298.9 210 66.2
BcaC01g01793 Brassica carinata HOM05D005903 ORTHO05D007293 7.0e-79 298.5 210 65.7
BcaC07g40489 Brassica carinata HOM05D005903 ORTHO05D007293 7.0e-79 298.5 210 65.2
C03p71840 Brassica napus HOM05D005903 ORTHO05D007293 7.0e-79 298.5 210 65.7
Thhalv10011094m.g Eutrema salsugineum HOM05D005903 ORTHO05D007293 7.0e-79 298.5 210 65.2
Thecc.02G003100 Theobroma cacao HOM05D005903 ORTHO05D007293 7.0e-79 298.5 211 64.5
Atru.chr10.296 Acer truncatum HOM05D005903 ORTHO05D007293 1.2e-78 297.7 209 65.1
BolC3t19474H Brassica oleracea HOM05D005903 ORTHO05D007293 1.2e-78 297.7 210 65.2
Nn7g38356 Nelumbo nucifera HOM05D005903 ORTHO05D007293 1.2e-78 297.7 246 59.8
C08p34580 Brassica napus HOM05D005903 ORTHO05D007293 2.0e-78 297.0 210 64.8
BolC8t51059H Brassica oleracea HOM05D005903 ORTHO05D007293 2.0e-78 297.0 210 64.8
Gohir.D11G050900 Gossypium hirsutum HOM05D005903 ORTHO05D007293 2.6e-78 296.6 215 64.7
Potri.001G076200 Populus trichocarpa HOM05D005903 ORTHO05D007293 2.6e-78 296.6 210 66.2
CSS0034787 Camellia sinensis var. sinensis HOM05D005903 ORTHO05D007293 5.9e-78 295.4 221 63.8
ECA247G0018 Erigeron canadensis HOM05D005903 ORTHO05D007293 5.9e-78 295.4 217 64.1
Hma1.2p1_0088F.1_g045276 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 5.9e-78 295.4 223 63.7
Dinv26323 Davidia involucrata HOM05D005903 ORTHO05D007293 7.7e-78 295.0 213 65.3
Lsat_1_v5_gn_1_24420 Lactuca sativa HOM05D005903 ORTHO05D007293 1.0e-77 294.7 220 63.2
A06p19990 Brassica napus HOM05D005903 ORTHO05D007293 1.3e-77 294.3 210 64.3
BraA06t25085Z Brassica rapa HOM05D005903 ORTHO05D007293 1.3e-77 294.3 210 64.3
Manes.03G070940 Manihot esculenta HOM05D005903 ORTHO05D007293 1.3e-77 294.3 217 63.1
Cpa.g.sc30.99 Carica papaya HOM05D005903 ORTHO05D007293 2.2e-77 293.5 216 63.4
Nitab4.5_0000844g0290 Nicotiana tabacum HOM05D005903 ORTHO05D007293 2.9e-77 293.1 220 61.4
Nitab4.5_0010610g0030 Nicotiana tabacum HOM05D005903 ORTHO05D007293 3.8e-77 292.7 228 61.0
ATR0605G282 Amborella trichopoda HOM05D005903 ORTHO05D007293 5.0e-77 292.4 223 62.8
QL11p012010 Quercus lobata HOM05D005903 ORTHO05D007293 6.5e-77 292.0 216 63.9
BraA09t40620Z Brassica rapa HOM05D005903 ORTHO05D007293 8.5e-77 291.6 209 63.6
CiPaw.09G138500 Carya illinoinensis HOM05D005903 ORTHO05D007293 8.5e-77 291.6 213 64.3
Gorai.007G055300 Gossypium raimondii HOM05D005903 ORTHO05D007293 8.5e-77 291.6 215 63.7
FAN11G1857 Fragaria x ananassa HOM05D005903 ORTHO05D007293 1.1e-76 291.2 215 64.7
PGR044G2521 Punica granatum HOM05D005903 ORTHO05D007293 1.1e-76 291.2 222 62.6
CARHR156310 Cardamine hirsuta HOM05D005903 ORTHO05D007293 1.5e-76 290.8 210 62.9
AL5G26920 Arabidopsis lyrata HOM05D005903 ORTHO05D007293 1.9e-76 290.4 224 62.1
AT3G47630 Arabidopsis thaliana HOM05D005903 ORTHO05D007293 1.9e-76 290.4 210 63.8
FvH4_3g13050 Fragaria vesca HOM05D005903 ORTHO05D007293 2.5e-76 290.0 215 64.7
FAN21G0687 Fragaria x ananassa HOM05D005903 ORTHO05D007293 2.5e-76 290.0 212 66.0
A09p51850 Brassica napus HOM05D005903 ORTHO05D007293 3.2e-76 289.7 209 63.6
Carub.0005s1376 Capsella rubella HOM05D005903 ORTHO05D007293 3.2e-76 289.7 210 63.3
CAN.G809.52 Capsicum annuum HOM05D005903 ORTHO05D007293 3.2e-76 289.7 224 62.5
FAN16G3015 Fragaria x ananassa HOM05D005903 ORTHO05D007293 4.2e-76 289.3 212 65.1
PSO675G2427 Papaver somniferum HOM05D005903 ORTHO05D007293 4.2e-76 289.3 220 60.9
Sp1g31680 Schrenkiella parvula HOM05D005903 ORTHO05D007293 4.2e-76 289.3 210 64.3
HanXRQChr12g0369311 Helianthus annuus HOM05D005903 ORTHO05D007293 7.2e-76 288.5 220 62.3
Medtr4g094760 Medicago truncatula HOM05D005903 ORTHO05D007293 7.2e-76 288.5 211 65.4
FAN25G2454 Fragaria x ananassa HOM05D005903 ORTHO05D007293 1.2e-75 287.7 212 65.1
Migut.M02015 Erythranthe guttata HOM05D005903 ORTHO05D007293 1.6e-75 287.3 216 61.6
Migut.G01043 Erythranthe guttata HOM05D005903 ORTHO05D007293 6.1e-75 285.4 216 60.6
PGSC0003DMG400007316 Solanum tuberosum HOM05D005903 ORTHO05D007293 6.1e-75 285.4 220 61.4
MD05G1245400 Malus domestica HOM05D005903 ORTHO05D007293 8.0e-75 285.0 213 64.8
Solyc02g081840.4 Solanum lycopersicum HOM05D005903 ORTHO05D007293 1.8e-74 283.9 220 61.4
Aa31LG9G16250 Aethionema arabicum HOM05D005903 ORTHO05D007293 2.3e-74 283.5 209 62.7
EL10Ac5g11217 Beta vulgaris HOM05D005903 ORTHO05D007293 3.0e-74 283.1 219 60.7
Prupe.7G025500 Prunus persica HOM05D005903 ORTHO05D007293 3.0e-74 283.1 216 63.0
Lj4g0014401 Lotus japonicus HOM05D005903 ORTHO05D007293 8.8e-74 281.6 211 62.6
VMungo0251G1440 Vigna mungo HOM05D005903 ORTHO05D007293 8.8e-74 281.6 211 61.6
GSVIVG01012154001 Vitis vinifera HOM05D005903 ORTHO05D007293 8.8e-74 281.6 234 62.4
RcHm_v2.0_Chr5g0021241 Rosa chinensis HOM05D005903 ORTHO05D007293 1.2e-73 281.2 212 63.2
Ca_18231_v3 Cicer arietinum L. HOM05D005903 ORTHO05D007293 1.5e-73 280.8 211 63.0
Sed0025041 Sechium edule HOM05D005903 ORTHO05D007293 1.5e-73 280.8 217 60.4
DCAR_003756 Daucus carota HOM05D005903 ORTHO05D007293 2.0e-73 280.4 214 62.1
Hund09980 Selenicereus undatus HOM05D005903 ORTHO05D007293 2.6e-73 280.0 210 59.5
MELO3C007010.2 Cucumis melo HOM05D005903 ORTHO05D007293 4.4e-73 279.3 217 59.0
CsaV3_6G052990 Cucumis sativus L. HOM05D005903 ORTHO05D007293 4.4e-73 279.3 215 60.0
Glyma.05G134300 Glycine max HOM05D005903 ORTHO05D007293 7.5e-73 278.5 211 60.7
TPR.G23817 Trifolium pratense HOM05D005903 ORTHO05D007293 7.5e-73 278.5 214 61.7
AUR62036920 Chenopodium quinoa HOM05D005903 ORTHO05D007293 9.7e-73 278.1 212 59.4
Psat7g087640 Pisum sativum HOM05D005903 ORTHO05D007293 1.7e-72 277.3 211 62.1
CANSAT35G1866 Cannabis sativa HOM05D005903 ORTHO05D007293 3.7e-72 276.2 217 58.1
vmacro03560 Vaccinium macrocarpon HOM05D005903 ORTHO05D007293 8.2e-72 275.0 247 57.9
Aqoxy7G00859 Aquilegia oxysepala HOM05D005903 ORTHO05D007293 1.1e-71 274.6 206 63.1
Cc09_g05110 Coffea canephora HOM05D005903 ORTHO05D007293 1.1e-71 274.6 233 57.9
Glyma.08G089000 Glycine max HOM05D005903 ORTHO05D007293 1.1e-71 274.6 211 60.7
Cc00_g27340 Coffea canephora HOM05D005903 ORTHO05D007293 1.4e-71 274.2 213 62.0
ClCG01G025750 Citrullus lanatus HOM05D005903 ORTHO05D007293 1.2e-70 271.2 208 60.1
THA.LOC104812245 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 2.7e-70 270.0 263 52.1
THA.LOC104824626 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 2.7e-70 270.0 258 53.1
COL.COLO4_05791 Corchorus olitorius HOM05D005903 ORTHO05D007293 4.5e-70 269.2 180 68.9
Ciclev10016117m.g Citrus clementina HOM05D005903 ORTHO05D007293 1.3e-69 267.7 192 65.6
Rhsim05G0003000 Rhododendron simsii HOM05D005903 ORTHO05D007293 3.8e-69 266.2 264 53.0
Rhsim13G0219000 Rhododendron simsii HOM05D005903 ORTHO05D007293 6.5e-69 265.4 215 60.9
Dinv01020 Davidia involucrata HOM05D005903 ORTHO05D007293 8.5e-69 265.0 178 69.1
Duzib052G0373 Durio zibethinus HOM05D005903 ORTHO05D007293 1.2e-67 261.2 238 55.0
SEGI_28167 Sequoiadendron giganteum HOM05D005903 ORTHO05D007293 1.2e-67 261.2 220 57.7
Sabra01G0053000 Salix brachista HOM05D005903 ORTHO05D007293 1.8e-66 257.3 211 61.1
Hma1.2p1_0088F.1_g045273 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 3.4e-65 253.1 236 56.4
Hma1.2p1_1011F.1_g247520 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 1.3e-64 251.1 236 55.9
SMO367G0859 Selaginella moellendorffii HOM05D005903 ORTHO05D007293 1.3e-64 251.1 236 54.7
arahy.Tifrunner.gnm1.ann1.7A7AL1 Arachis hypogaea HOM05D005903 ORTHO05D007293 8.3e-64 248.4 210 58.1
SGA_v2.0_scaffold31G12765 Striga asiatica HOM05D005903 ORTHO05D007293 4.1e-63 246.1 191 60.7
Lalb_Chr07g0188231 Lupinus albus HOM05D005903 ORTHO05D007293 5.4e-63 245.7 194 61.9
AagrBONN_evm.TU.Sc2ySwM_344.2832 Anthoceros agrestis HOM05D005903 ORTHO05D007293 3.5e-62 243.0 219 52.5
Mapoly0019s0171 Marchantia polymorpha HOM05D005903 ORTHO05D007293 1.2e-59 234.6 217 52.1
Pp3c7_4190 Physcomitrium patens HOM05D005903 ORTHO05D007293 1.6e-59 234.2 226 50.9
CDE06G1059 Ceratophyllum demersum HOM05D005903 ORTHO05D007293 2.8e-59 233.4 232 51.7
TWI63G1157 Tripterygium wilfordii HOM05D005903 ORTHO05D007293 3.6e-59 233.0 213 53.5
PSO675G2002 Papaver somniferum HOM05D005903 ORTHO05D007293 1.0e-58 231.5 220 50.9
Lj1C1150G3 Lonicera japonica HOM05D005903 ORTHO05D007293 6.8e-58 228.8 187 57.8
Haze_05254 Corylus avellana HOM05D005903 ORTHO05D007293 4.4e-57 226.1 215 53.5
AUR62032162 Chenopodium quinoa HOM05D005903 ORTHO05D007293 3.1e-55 219.9 170 60.0
Rhsim07G0106900 Rhododendron simsii HOM05D005903 ORTHO05D007293 7.0e-55 218.8 215 53.0
Phvul.002G188100 Phaseolus vulgaris HOM05D005903 ORTHO05D007293 2.5e-52 210.3 152 65.1
Sopen02g026460 Solanum pennellii HOM05D005903 ORTHO05D007293 1.2e-51 208.0 153 63.4
Oeu056062.1 Olea europaea HOM05D005903 ORTHO05D007293 3.0e-50 203.4 159 60.4
Prupe.4G118500 Prunus persica HOM05D005903 ORTHO05D007293 4.0e-50 203.0 140 67.1
Peaxi162Scf00036g02217 Petunia axillaris HOM05D005903 ORTHO05D007293 5.2e-50 202.6 193 52.8
Gohir.D11G050975 Gossypium hirsutum HOM05D005903 ORTHO05D007293 7.8e-46 188.7 169 56.8
arahy.Tifrunner.gnm1.ann1.STP4KF Arachis hypogaea HOM05D005903 ORTHO05D007293 3.0e-45 186.8 210 47.1
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 1.7e-40 171.0 188 46.8
Cfa024540 Carpinus fangiana HOM05D005903 ORTHO05D007293 2.4e-39 167.2 230 40.4
Sc04g0004120 Simmondsia chinensis HOM05D005903 ORTHO05D007293 2.1e-35 154.1 109 62.4
MCO11G061 Micromonas commoda HOM05D005903 ORTHO05D007293 8.9e-34 148.7 225 36.4
Os05g0295700 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 3.7e-32 143.3 86 77.9
Cre10.g436900 Chlamydomonas reinhardtii HOM05D005903 ORTHO05D007293 1.4e-31 141.4 191 40.3
PRCOL_00001260 Prasinoderma coloniale HOM05D005903 ORTHO05D007293 1.2e-30 138.3 245 36.3
unitig_46.g18341 Utricularia gibba HOM05D005903 ORTHO05D007293 1.1e-28 131.7 210 38.1
Migut.O00470 Erythranthe guttata HOM05D005903 ORTHO05D007293 7.6e-25 119.0 144 46.5
Haze_05249 Corylus avellana HOM05D005903 ORTHO05D007293 7.8e-22 109.0 92 64.1
Glyma.08G193350 Glycine max HOM05D005903 ORTHO05D007293 1.4e-15 88.2 60 65.0
Sc04g0004130 Simmondsia chinensis HOM05D005903 ORTHO05D007293 2.7e-14 84.0 68 58.8
CARHR106840 Cardamine hirsuta HOM05D005903 ORTHO05D007293 6.9e-10 69.3 52 61.5
CBR_g8146 Chara braunii HOM05D005903 ORTHO05D000048 1.5e-09 68.2 180 30.0
CAN.G508.15 Capsicum annuum HOM05D005903 ORTHO05D007293 4.9e-08 63.2 48 54.2
SHI32711 Sapria himalayana HOM05D005903 ORTHO05D007293 3.5e-06 57.0 42 52.4


User provided reference genes

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