Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0549605 Oryza sativa ssp. japonica HOM05D026319 ORTHO05D301608 0.0e+00 1617.1 792 100.0
Os07g0514400 Oryza sativa ssp. japonica HOM05D026319 ORTHO05D294234 1.4e-161 574.3 860 44.2
Os11g0549610 Oryza sativa ssp. japonica HOM05D026319 ORTHO05D295653 2.6e-147 526.9 598 53.2
Os11g0598800 Oryza sativa ssp. japonica HOM05D026319 ORTHO05D295792 2.8e-40 171.4 962 23.0
Os11g0599101 Oryza sativa ssp. japonica HOM05D016364 ORTHO05D018060 1.7e-21 109.0 231 30.7
Dinv33700 Davidia involucrata HOM05D001961 ORTHO05D002286 5.4e-20 104.0 255 31.0
SGA_v2.0_scaffold114G31883 Striga asiatica HOM05D001961 ORTHO05D002286 1.2e-19 102.8 274 28.8
FAN04G1134 Fragaria x ananassa HOM05D001961 ORTHO05D002286 1.6e-19 102.4 253 29.6
RcHm_v2.0_Chr7g0180371 Rosa chinensis HOM05D001961 ORTHO05D002286 1.0e-18 99.8 257 29.2
Hma1.2p1_0002F.1_g003400 Hydrangea macrophylla HOM05D001961 ORTHO05D002286 1.1e-17 96.3 259 29.3
TWI15G0443 Tripterygium wilfordii HOM05D001961 ORTHO05D002286 1.5e-17 95.9 282 27.3
TWI81G0197 Tripterygium wilfordii HOM05D001961 ORTHO05D002286 3.3e-17 94.7 276 27.9
Thecc.03G077100 Theobroma cacao HOM05D001961 ORTHO05D002286 5.6e-17 94.0 282 29.1
TWI60G1556 Tripterygium wilfordii HOM05D001961 ORTHO05D002286 9.6e-17 93.2 282 26.6
Carub.0005s1404 Capsella rubella HOM05D001961 ORTHO05D002286 4.8e-16 90.9 279 28.0
Dinv33701 Davidia involucrata HOM05D001961 ORTHO05D002286 3.8e-13 81.3 256 27.0
BcaC05g30233 Brassica carinata HOM05D003941 ORTHO05D009447 6.0e-11 73.9 151 29.8
BraA05t23053Z Brassica rapa HOM05D003941 ORTHO05D009447 1.0e-10 73.2 151 28.5
A05p43100 Brassica napus HOM05D003941 ORTHO05D009447 3.9e-10 71.2 151 28.5
CARHR056630 Cardamine hirsuta HOM05D003941 ORTHO05D009447 5.1e-10 70.9 152 29.6
CARHR038550 Cardamine hirsuta HOM05D003941 ORTHO05D009447 8.7e-10 70.1 151 29.1
BcaC03g14683 Brassica carinata HOM05D003941 ORTHO05D009447 1.9e-09 68.9 149 27.5
C05p62840 Brassica napus HOM05D003941 ORTHO05D009447 2.5e-09 68.6 155 27.7
Sp3g03240 Schrenkiella parvula HOM05D003941 ORTHO05D009447 2.5e-09 68.6 152 28.3
BcaC05g30201 Brassica carinata HOM05D003941 ORTHO05D009447 3.3e-09 68.2 155 27.7
Carub.0002s1061 Capsella rubella HOM05D003941 ORTHO05D009447 3.3e-09 68.2 156 27.6
Sabra17G0078800 Salix brachista HOM05D001961 ORTHO05D002286 3.3e-09 68.2 205 26.8
AL2G19870 Arabidopsis lyrata HOM05D003941 ORTHO05D009447 4.3e-09 67.8 126 30.2
C02p21230 Brassica napus HOM05D003941 ORTHO05D009447 4.3e-09 67.8 149 26.8
BcaC05g29948 Brassica carinata HOM05D003941 ORTHO05D009447 7.4e-09 67.0 155 27.1
BolC5t34939H Brassica oleracea HOM05D003941 ORTHO05D009447 7.4e-09 67.0 155 27.1
Carub.0002s1065 Capsella rubella HOM05D003941 ORTHO05D009447 2.8e-08 65.1 111 30.6
CARHR056750 Cardamine hirsuta HOM05D003941 ORTHO05D009447 2.8e-08 65.1 120 31.7
BcaC03g14680 Brassica carinata HOM05D003941 ORTHO05D020023 3.7e-08 64.7 129 34.1
BolC2t08259H Brassica oleracea HOM05D003941 ORTHO05D020023 3.7e-08 64.7 129 34.1
Glyma.17G095800 Glycine max HOM05D001961 ORTHO05D002286 3.7e-08 64.7 208 26.9
AL2G20180 Arabidopsis lyrata HOM05D003941 ORTHO05D009447 6.2e-08 63.9 128 28.9
BolC2t08263H Brassica oleracea HOM05D003941 ORTHO05D009447 6.2e-08 63.9 149 26.2
Carub.0001s4142 Capsella rubella HOM05D003941 ORTHO05D009447 8.2e-08 63.5 138 29.7
BcaB05g24093 Brassica carinata HOM05D003941 ORTHO05D009447 1.1e-07 63.2 149 27.5
A02p13090 Brassica napus HOM05D003941 ORTHO05D009447 1.4e-07 62.8 154 26.0
A05p43090 Brassica napus HOM05D003941 ORTHO05D009447 1.4e-07 62.8 153 27.5
BraA02t06365Z Brassica rapa HOM05D003941 ORTHO05D009447 1.4e-07 62.8 154 26.0
BcaB05g24095 Brassica carinata HOM05D003941 ORTHO05D009447 1.8e-07 62.4 153 25.5
Os11g0599000 Oryza sativa ssp. japonica HOM05D016364 ORTHO05D018060 1.8e-07 62.4 108 31.5
BraA02t06362Z Brassica rapa HOM05D003941 ORTHO05D020023 6.9e-07 60.5 129 32.6
C02p21210 Brassica napus HOM05D003941 ORTHO05D009447 9.0e-07 60.1 149 26.2
Carub.0008s2262 Capsella rubella HOM05D003941 ORTHO05D009447 1.5e-06 59.3 147 23.1
AT1G52430 Arabidopsis thaliana HOM05D003941 ORTHO05D009447 2.0e-06 58.9 98 33.7
BcaC03g14681 Brassica carinata HOM05D003941 ORTHO05D009447 2.0e-06 58.9 149 25.5
BolC2t08261H Brassica oleracea HOM05D003941 ORTHO05D009447 2.0e-06 58.9 149 25.5
CARHR120250 Cardamine hirsuta HOM05D003941 ORTHO05D009447 4.5e-06 57.8 133 29.3
Carub.0002s1069 Capsella rubella HOM05D003941 ORTHO05D009447 1.0e-05 56.6 71 35.2


User provided reference genes

Program Settings