Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0546300 Oryza sativa ssp. japonica HOM05D004930 ORTHO05D006531 3.1e-204 714.9 368 100.0
Zm00001eb113740 Zea mays HOM05D004930 ORTHO05D006531 4.0e-159 565.1 373 78.0
GSVIVG01022999001 Vitis vinifera HOM05D004930 ORTHO05D006531 2.7e-131 472.6 316 72.5
Potri.001G209500 Populus trichocarpa HOM05D004930 ORTHO05D006531 1.5e-129 466.8 328 68.9
Glyma.08G184900 Glycine max HOM05D004930 ORTHO05D006531 2.5e-129 466.1 356 66.9
arahy.Tifrunner.gnm1.ann1.PLNC5S Arachis hypogaea HOM05D004930 ORTHO05D006531 3.3e-129 465.7 322 70.8
Glyma.15G047800 Glycine max HOM05D004930 ORTHO05D006531 4.3e-129 465.3 335 69.0
VMungo0540G0757 Vigna mungo HOM05D004930 ORTHO05D006531 4.3e-129 465.3 344 68.0
MELO3C019485.2 Cucumis melo HOM05D004930 ORTHO05D006531 5.6e-129 464.9 331 69.5
CiPaw.06G148500 Carya illinoinensis HOM05D004930 ORTHO05D006531 1.6e-128 463.4 362 64.9
CsaV3_3G018910 Cucumis sativus L. HOM05D004930 ORTHO05D006531 1.6e-128 463.4 331 68.9
Phvul.006G213000 Phaseolus vulgaris HOM05D004930 ORTHO05D006531 1.6e-128 463.4 345 67.8
arahy.Tifrunner.gnm1.ann1.3M9FW6 Arachis hypogaea HOM05D004930 ORTHO05D006531 2.1e-128 463.0 321 69.8
TAR628G0980 Trochodendron aralioides HOM05D004930 ORTHO05D006531 2.1e-128 463.0 332 68.7
Cfa005536 Carpinus fangiana HOM05D004930 ORTHO05D006531 4.8e-128 461.8 328 69.8
FvH4_5g29680 Fragaria vesca HOM05D004930 ORTHO05D006531 6.2e-128 461.5 342 66.1
CSS0021494 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 1.8e-127 459.9 333 67.0
TAR376G0678 Trochodendron aralioides HOM05D004930 ORTHO05D006531 4.0e-127 458.8 337 68.0
ClCG05G009760 Citrullus lanatus HOM05D004930 ORTHO05D006531 9.0e-127 457.6 324 68.8
Duzib248G0906 Durio zibethinus HOM05D004930 ORTHO05D006531 1.2e-126 457.2 341 66.3
FAN13G1313 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.0e-126 456.4 338 66.3
Nn1g08650 Nelumbo nucifera HOM05D004930 ORTHO05D006531 2.0e-126 456.4 334 66.5
Psat1g224280 Pisum sativum HOM05D004930 ORTHO05D006531 2.6e-126 456.1 319 69.6
Ca_00086_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 3.4e-126 455.7 330 67.9
Atru.chr6.830 Acer truncatum HOM05D004930 ORTHO05D006531 4.5e-126 455.3 341 66.0
Solyc01g104310.3 Solanum lycopersicum HOM05D004930 ORTHO05D006531 4.5e-126 455.3 345 64.1
Sopen01g046750 Solanum pennellii HOM05D004930 ORTHO05D006531 5.8e-126 454.9 345 64.1
PGSC0003DMG400023754 Solanum tuberosum HOM05D004930 ORTHO05D006531 5.8e-126 454.9 343 65.0
DCAR_001819 Daucus carota HOM05D004930 ORTHO05D006531 1.3e-125 453.8 351 64.4
Gohir.A01G001000 Gossypium hirsutum HOM05D004930 ORTHO05D006531 1.3e-125 453.8 333 67.0
Gohir.D01G000700 Gossypium hirsutum HOM05D004930 ORTHO05D006531 2.2e-125 453.0 333 66.7
Gorai.002G001200 Gossypium raimondii HOM05D004930 ORTHO05D006531 2.2e-125 453.0 333 66.7
Lalb_Chr18g0060861 Lupinus albus HOM05D004930 ORTHO05D006531 2.2e-125 453.0 345 64.9
Cpa.g.sc2.5 Carica papaya HOM05D004930 ORTHO05D006531 2.9e-125 452.6 338 66.0
FAN04G2298 Fragaria x ananassa HOM05D004930 ORTHO05D006531 2.9e-125 452.6 354 63.8
TWI59G0754 Tripterygium wilfordii HOM05D004930 ORTHO05D006531 8.4e-125 451.1 337 65.3
Ciclev10001315m.g Citrus clementina HOM05D004930 ORTHO05D006531 1.1e-124 450.7 330 67.3
Potri.003G020800 Populus trichocarpa HOM05D004930 ORTHO05D006531 1.1e-124 450.7 389 59.4
RcHm_v2.0_Chr7g0223001 Rosa chinensis HOM05D004930 ORTHO05D006531 1.1e-124 450.7 327 67.0
SalBow6G0918 Salvia bowleyana HOM05D004930 ORTHO05D006531 1.1e-124 450.7 359 63.2
SalBow6G1869 Salvia bowleyana HOM05D004930 ORTHO05D006531 1.1e-124 450.7 359 63.2
Cc02_g22360 Coffea canephora HOM05D004930 ORTHO05D006531 1.4e-124 450.3 345 66.7
Lj6g0009653 Lotus japonicus HOM05D004930 ORTHO05D006531 2.5e-124 449.5 278 77.3
TPR.G2103 Trifolium pratense HOM05D004930 ORTHO05D006531 2.5e-124 449.5 327 66.7
Rhsim05G0119100 Rhododendron simsii HOM05D004930 ORTHO05D006531 5.5e-124 448.4 339 64.9
Duzib052G0674 Durio zibethinus HOM05D004930 ORTHO05D006531 7.1e-124 448.0 370 61.6
SGA_v2.0_scaffold145G36067 Striga asiatica HOM05D004930 ORTHO05D006531 2.1e-123 446.4 335 64.8
Eucgr.G00613 Eucalyptus grandis HOM05D004930 ORTHO05D006531 3.5e-123 445.7 342 63.2
MD15G1421100 Malus domestica HOM05D004930 ORTHO05D006531 3.5e-123 445.7 328 67.4
Thecc.02G040000 Theobroma cacao HOM05D004930 ORTHO05D006531 3.5e-123 445.7 335 66.3
FAN18G2930 Fragaria x ananassa HOM05D004930 ORTHO05D006531 4.6e-123 445.3 348 64.1
EL10Ac6g15372 Beta vulgaris HOM05D004930 ORTHO05D006531 6.0e-123 444.9 326 67.2
Aqoxy5G02422 Aquilegia oxysepala HOM05D004930 ORTHO05D006531 1.0e-122 444.1 355 62.3
ECA236G4599 Erigeron canadensis HOM05D004930 ORTHO05D006531 1.8e-122 443.4 358 61.7
THA.LOC104810264 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 1.8e-122 443.4 318 67.6
CDE05G0822 Ceratophyllum demersum HOM05D004930 ORTHO05D006531 3.9e-122 442.2 333 64.6
COL.COLO4_17882 Corchorus olitorius HOM05D004930 ORTHO05D006531 5.1e-122 441.8 337 65.0
CANSAT11G0917 Cannabis sativa HOM05D004930 ORTHO05D006531 8.7e-122 441.0 339 63.1
CAN.G1577.7 Capsicum annuum HOM05D004930 ORTHO05D006531 8.7e-122 441.0 282 73.0
Medtr2g007650 Medicago truncatula HOM05D004930 ORTHO05D006531 8.7e-122 441.0 321 66.4
Nitab4.5_0011195g0040 Nicotiana tabacum HOM05D004930 ORTHO05D006531 8.7e-122 441.0 336 63.7
PGR042G0956 Punica granatum HOM05D004930 ORTHO05D006531 1.5e-121 440.3 355 62.0
Aa31LG6G7800 Aethionema arabicum HOM05D004930 ORTHO05D006531 4.3e-121 438.7 317 66.9
HanXRQChr11g0333531 Helianthus annuus HOM05D004930 ORTHO05D006531 5.7e-121 438.3 343 63.3
AL1G47670 Arabidopsis lyrata HOM05D004930 ORTHO05D006531 7.4e-121 438.0 316 67.1
ATR0684G093 Amborella trichopoda HOM05D004930 ORTHO05D006531 1.3e-120 437.2 332 66.0
Lsat_1_v5_gn_7_77761 Lactuca sativa HOM05D004930 ORTHO05D006531 1.3e-120 437.2 350 63.4
AT1G33270 Arabidopsis thaliana HOM05D004930 ORTHO05D006531 4.8e-120 435.3 316 66.5
Sp1g28730 Schrenkiella parvula HOM05D004930 ORTHO05D006531 1.4e-119 433.7 314 65.9
Hund04330 Selenicereus undatus HOM05D004930 ORTHO05D006531 4.1e-119 432.2 324 65.4
Carub.0001s3147 Capsella rubella HOM05D004930 ORTHO05D006531 5.3e-119 431.8 317 65.0
Actinidia39050 Actinidia chinensis HOM05D004930 ORTHO05D006531 6.9e-119 431.4 349 61.6
CARHR032640 Cardamine hirsuta HOM05D004930 ORTHO05D006531 1.2e-118 430.6 325 63.7
Lalb_Chr20g0123411 Lupinus albus HOM05D004930 ORTHO05D006531 1.2e-118 430.6 305 67.9
BcaB04g17919 Brassica carinata HOM05D004930 ORTHO05D006531 2.9e-117 426.0 315 64.1
SEGI_13232 Sequoiadendron giganteum HOM05D004930 ORTHO05D006531 2.9e-117 426.0 357 59.7
Gohir.D08G010200 Gossypium hirsutum HOM05D004930 ORTHO05D006531 5.5e-116 421.8 342 61.1
A08p08610 Brassica napus HOM05D004930 ORTHO05D006531 1.2e-115 420.6 346 58.7
BraA08t32874Z Brassica rapa HOM05D004930 ORTHO05D006531 1.2e-115 420.6 346 58.7
Gorai.004G003500 Gossypium raimondii HOM05D004930 ORTHO05D006531 4.6e-115 418.7 340 60.9
BcaC07g37556 Brassica carinata HOM05D004930 ORTHO05D006531 1.8e-114 416.8 341 58.9
PSO170G4712 Papaver somniferum HOM05D004930 ORTHO05D006531 5.1e-114 415.2 339 60.2
Gohir.A08G000149 Gossypium hirsutum HOM05D004930 ORTHO05D006531 8.8e-114 414.5 340 60.3
BcaB07g32965 Brassica carinata HOM05D004930 ORTHO05D006531 1.5e-113 413.7 311 64.0
MBI03_g28294_MAGBIO Magnolia biondii HOM05D004930 ORTHO05D006531 4.3e-113 412.1 280 69.3
BraA09t38838Z Brassica rapa HOM05D004930 ORTHO05D006531 7.4e-113 411.4 312 63.1
A09p32980 Brassica napus HOM05D004930 ORTHO05D006531 2.2e-112 409.8 312 62.8
Sc07g0007240 Simmondsia chinensis HOM05D004930 ORTHO05D006531 4.8e-112 408.7 328 62.5
BcaC08g43878 Brassica carinata HOM05D004930 ORTHO05D006531 6.3e-112 408.3 313 62.9
BolC6t36417H Brassica oleracea HOM05D004930 ORTHO05D006531 6.3e-112 408.3 313 62.9
C06p12670 Brassica napus HOM05D004930 ORTHO05D006531 1.4e-111 407.1 313 62.3
QL02p098488 Quercus lobata HOM05D004930 ORTHO05D006531 1.4e-111 407.1 452 50.7
Ah.03g147430 Amaranthus hybridus HOM05D004930 ORTHO05D006531 1.3e-109 400.6 330 60.9
Sabra03G0012100 Salix brachista HOM05D004930 ORTHO05D006531 1.4e-108 397.1 460 47.0
SMO145G0200 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 7.2e-108 394.8 266 70.7
Lj5A251T70 Lonicera japonica HOM05D004930 ORTHO05D006531 3.3e-105 386.0 337 59.3
Peaxi162Scf00011g00243 Petunia axillaris HOM05D004930 ORTHO05D006531 2.2e-104 383.3 327 59.0
Thhalv10007991m.g Eutrema salsugineum HOM05D004930 ORTHO05D006531 7.7e-102 374.8 268 67.2
AUR62017811 Chenopodium quinoa HOM05D004930 ORTHO05D006531 5.0e-101 372.1 292 63.7
vmacro01769 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 5.0e-101 372.1 340 56.8
Nitab4.5_0002245g0180 Nicotiana tabacum HOM05D004930 ORTHO05D006531 5.5e-100 368.6 320 57.8
Oeu012747.1 Olea europaea HOM05D004930 ORTHO05D006531 7.2e-100 368.2 217 77.4
Ca_29925_v3 Cicer arietinum L. HOM05D004930 ORTHO05D006531 4.7e-99 365.5 215 78.1
AagrBONN_evm.TU.Sc2ySwM_344.3941 Anthoceros agrestis HOM05D004930 ORTHO05D006531 1.8e-98 363.6 296 61.8
Sabra01G0161800 Salix brachista HOM05D004930 ORTHO05D006531 3.0e-98 362.8 376 52.4
BolC8t47898H Brassica oleracea HOM05D004930 ORTHO05D006531 5.2e-98 362.1 388 49.5
Rhsim11G0130300 Rhododendron simsii HOM05D004930 ORTHO05D006531 3.3e-97 359.4 215 76.3
THA.LOC104813074 Tarenaya hassleriana HOM05D004930 ORTHO05D006531 1.8e-95 353.6 286 60.1
Pp3c11_20720 Physcomitrium patens HOM05D004930 ORTHO05D006531 2.2e-93 346.7 256 63.7
Mapoly0101s0012 Marchantia polymorpha HOM05D004930 ORTHO05D006531 2.9e-93 346.3 260 61.9
HPP92_002187 Vanilla planifolia HOM05D004930 ORTHO05D006531 6.5e-93 345.1 287 62.7
HanXRQChr02g0058791 Helianthus annuus HOM05D004930 ORTHO05D006531 1.4e-87 327.4 222 70.3
Dinv19356 Davidia involucrata HOM05D004930 ORTHO05D006531 9.1e-87 324.7 272 59.9
SMO139G0053 Selaginella moellendorffii HOM05D004930 ORTHO05D006531 3.2e-84 316.2 215 69.3
AagrBONN_evm.TU.Sc2ySwM_344.3947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.6e-81 306.6 262 57.6
AUR62003501 Chenopodium quinoa HOM05D004930 ORTHO05D006531 7.5e-81 305.1 215 67.4
vmacro19901 Vaccinium macrocarpon HOM05D004930 ORTHO05D006531 4.7e-75 285.8 546 34.2
CBR_g22336 Chara braunii HOM05D004930 ORTHO05D006531 2.6e-73 280.0 254 55.1
Sed0026856 Sechium edule HOM05D004930 ORTHO05D006531 1.7e-72 277.3 218 65.1
Manes.07G014400 Manihot esculenta HOM05D004930 ORTHO05D006531 3.1e-71 273.1 230 60.0
Prupe.1G566300 Prunus persica HOM05D004930 ORTHO05D006531 7.8e-70 268.5 227 62.6
CSS0024235 Camellia sinensis var. sinensis HOM05D004930 ORTHO05D006531 3.3e-68 263.1 289 51.6
Haze_01635 Corylus avellana HOM05D004930 ORTHO05D006531 1.1e-52 211.5 184 60.9
Cre03.g195500 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 2.1e-43 180.6 263 36.9
Cre12.g530950 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 2.1e-43 180.6 245 40.0
MCO11G494 Micromonas commoda HOM05D004930 ORTHO05D006531 9.9e-33 145.2 287 33.4
PRCOL_00005484 Prasinoderma coloniale HOM05D007321 ORTHO05D009244 3.5e-30 136.7 247 37.7
CARHR054090 Cardamine hirsuta HOM05D004930 ORTHO05D006531 1.0e-21 108.6 82 63.4
FvH4_3g29702 Fragaria vesca HOM05D004930 ORTHO05D011275 6.4e-16 89.4 90 53.3
Migut.N01037 Erythranthe guttata HOM05D004930 ORTHO05D006531 8.4e-16 89.0 60 71.7
FvH4_3g12743 Fragaria vesca HOM05D004930 ORTHO05D006531 1.1e-15 88.6 100 52.0
FvH4_4g16550 Fragaria vesca HOM05D004930 ORTHO05D011275 1.2e-14 85.1 101 46.5
AUR62003500 Chenopodium quinoa HOM05D004930 ORTHO05D006531 6.0e-14 82.8 118 42.4
FAN11G3733 Fragaria x ananassa HOM05D004930 ORTHO05D006531 6.0e-14 82.8 58 65.5
FAN17G0369 Fragaria x ananassa HOM05D004930 ORTHO05D011275 1.0e-13 82.0 103 45.6
MCO01G237 Micromonas commoda HOM05D004930 ORTHO05D006531 1.0e-13 82.0 194 28.9
FAN06G5097 Fragaria x ananassa HOM05D004930 ORTHO05D006531 3.0e-13 80.5 58 65.5
FAN25G1134 Fragaria x ananassa HOM05D004930 ORTHO05D006531 3.0e-13 80.5 58 65.5
Cre09.g400219 Chlamydomonas reinhardtii HOM05D004930 ORTHO05D006531 6.7e-13 79.3 166 30.1
FAN01G0209 Fragaria x ananassa HOM05D004930 ORTHO05D006531 8.7e-13 79.0 58 62.1
FAN12G1704 Fragaria x ananassa HOM05D004930 ORTHO05D006531 8.7e-13 79.0 58 62.1
FAN17G1951 Fragaria x ananassa HOM05D004930 ORTHO05D006531 8.7e-13 79.0 58 62.1
MCO09G146 Micromonas commoda HOM05D004930 ORTHO05D270306 1.1e-12 78.6 249 25.7
FAN17G1425 Fragaria x ananassa HOM05D004930 ORTHO05D006531 1.6e-11 74.7 58 58.6
PRCOL_00003693 Prasinoderma coloniale HOM05D004930 ORTHO05D006531 6.2e-11 72.8 157 33.8
Ca_20167_v3 Cicer arietinum L. HOM05D004930 ORTHO05D000002 6.9e-10 69.3 72 50.0


User provided reference genes

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