Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0545700 Oryza sativa ssp. japonica HOM05D004734 ORTHO05D006019 5.1e-168 594.3 304 100.0
Zm00001eb114880 Zea mays HOM05D004734 ORTHO05D006019 3.5e-132 475.3 295 82.0
TAR629G0221 Trochodendron aralioides HOM05D004734 ORTHO05D006019 1.7e-102 376.7 285 68.8
Nn1g07321 Nelumbo nucifera HOM05D004734 ORTHO05D006019 2.2e-102 376.3 288 67.0
Dinv08709 Davidia involucrata HOM05D004734 ORTHO05D006019 2.0e-100 369.8 284 67.3
Aqoxy2G03788 Aquilegia oxysepala HOM05D004734 ORTHO05D006019 7.3e-98 361.3 285 68.1
Potri.002G223600 Populus trichocarpa HOM05D004734 ORTHO05D006019 2.8e-97 359.4 284 65.1
Gohir.D07G174400 Gossypium hirsutum HOM05D004734 ORTHO05D006019 3.6e-97 359.0 285 64.6
GSVIVG01030526001 Vitis vinifera HOM05D004734 ORTHO05D006019 3.6e-97 359.0 288 65.3
Hma1.2p1_2840F.1_g329320 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 1.0e-96 357.5 287 66.2
Gohir.A07G168100 Gossypium hirsutum HOM05D004734 ORTHO05D006019 5.2e-96 355.1 285 63.9
RcHm_v2.0_Chr2g0157781 Rosa chinensis HOM05D004734 ORTHO05D006019 6.8e-96 354.8 282 66.0
CSS0018671 Camellia sinensis var. sinensis HOM05D004734 ORTHO05D006019 8.9e-96 354.4 290 64.5
Ciclev10014379m.g Citrus clementina HOM05D004734 ORTHO05D006019 8.9e-96 354.4 291 64.6
MBI16_g26176_MAGBIO Magnolia biondii HOM05D004734 ORTHO05D006019 8.9e-96 354.4 295 65.1
Atru.chr6.3288 Acer truncatum HOM05D004734 ORTHO05D006019 1.5e-95 353.6 286 66.1
FvH4_6g41900 Fragaria vesca HOM05D004734 ORTHO05D006019 1.5e-95 353.6 282 64.9
Thecc.01G184100 Theobroma cacao HOM05D004734 ORTHO05D006019 2.0e-95 353.2 284 63.7
Manes.12G058300 Manihot esculenta HOM05D004734 ORTHO05D006019 3.4e-95 352.4 284 64.8
HPP92_000240 Vanilla planifolia HOM05D004734 ORTHO05D006019 3.4e-95 352.4 287 62.7
CiPaw.04G108800 Carya illinoinensis HOM05D004734 ORTHO05D006019 7.5e-95 351.3 290 61.7
Duzib211G0196 Durio zibethinus HOM05D004734 ORTHO05D006019 7.5e-95 351.3 286 65.0
HPP92_000196 Vanilla planifolia HOM05D004734 ORTHO05D006019 7.5e-95 351.3 287 62.7
Cc00_g21460 Coffea canephora HOM05D004734 ORTHO05D006019 9.8e-95 350.9 284 62.7
Glyma.02G266800 Glycine max HOM05D004734 ORTHO05D006019 1.7e-94 350.1 282 64.2
CANSAT64G0097 Cannabis sativa HOM05D004734 ORTHO05D006019 2.2e-94 349.7 284 65.1
Medtr5g084830 Medicago truncatula HOM05D004734 ORTHO05D006019 2.2e-94 349.7 288 63.2
Cfa014305 Carpinus fangiana HOM05D004734 ORTHO05D006019 2.9e-94 349.4 284 63.7
Glyma.14G050700 Glycine max HOM05D004734 ORTHO05D006019 2.9e-94 349.4 290 62.4
MD09G1116200 Malus domestica HOM05D004734 ORTHO05D006019 2.9e-94 349.4 283 64.3
TPR.G25656 Trifolium pratense HOM05D004734 ORTHO05D006019 2.9e-94 349.4 282 63.8
Duzib138G1622 Durio zibethinus HOM05D004734 ORTHO05D006019 3.7e-94 349.0 301 61.5
Nitab4.5_0000006g0360 Nicotiana tabacum HOM05D004734 ORTHO05D006019 4.9e-94 348.6 284 63.4
Sc21g0001080 Simmondsia chinensis HOM05D004734 ORTHO05D006019 8.3e-94 347.8 284 64.8
Hma1.2p1_0445F.1_g154190 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 1.1e-93 347.4 287 65.2
Zm00001eb113720 Zea mays HOM05D004734 ORTHO05D006019 1.1e-93 347.4 223 80.7
BcaB01g03944 Brassica carinata HOM05D004734 ORTHO05D006019 1.4e-93 347.1 281 63.7
Psat2g026760 Pisum sativum HOM05D004734 ORTHO05D006019 2.4e-93 346.3 288 62.5
BcaC01g05869 Brassica carinata HOM05D004734 ORTHO05D006019 4.1e-93 345.5 281 63.3
PSO017G2150 Papaver somniferum HOM05D004734 ORTHO05D006019 4.1e-93 345.5 285 64.2
MD17G1107900 Malus domestica HOM05D004734 ORTHO05D006019 5.4e-93 345.1 283 64.7
Solyc05g043350.4 Solanum lycopersicum HOM05D004734 ORTHO05D006019 1.6e-92 343.6 284 63.0
Sopen05g026560 Solanum pennellii HOM05D004734 ORTHO05D006019 1.6e-92 343.6 284 63.0
THA.LOC104826129 Tarenaya hassleriana HOM05D004734 ORTHO05D006019 1.6e-92 343.6 281 63.3
Phvul.008G215200 Phaseolus vulgaris HOM05D004734 ORTHO05D006019 2.7e-92 342.8 286 62.6
Peaxi162Scf00977g00312 Petunia axillaris HOM05D004734 ORTHO05D006019 4.6e-92 342.0 288 61.5
arahy.Tifrunner.gnm1.ann1.L0FFGY Arachis hypogaea HOM05D004734 ORTHO05D006019 6.0e-92 341.7 285 62.8
Lalb_Chr10g0105531 Lupinus albus HOM05D004734 ORTHO05D006019 6.0e-92 341.7 282 62.1
Prupe.3G208500 Prunus persica HOM05D004734 ORTHO05D006019 6.0e-92 341.7 283 61.8
Sp4g15270 Schrenkiella parvula HOM05D004734 ORTHO05D006019 6.0e-92 341.7 281 62.6
C04p16650 Brassica napus HOM05D004734 ORTHO05D006019 7.8e-92 341.3 281 62.3
Nitab4.5_0009060g0010 Nicotiana tabacum HOM05D004734 ORTHO05D006019 7.8e-92 341.3 284 62.3
BcaB02g10504 Brassica carinata HOM05D004734 ORTHO05D006019 1.0e-91 340.9 281 62.3
DCAR_012916 Daucus carota HOM05D004734 ORTHO05D006019 1.3e-91 340.5 284 62.3
PGR042G3679 Punica granatum HOM05D004734 ORTHO05D006019 1.3e-91 340.5 284 65.5
FAN09G1456 Fragaria x ananassa HOM05D004734 ORTHO05D006019 1.7e-91 340.1 299 61.2
PSO675G0915 Papaver somniferum HOM05D004734 ORTHO05D006019 1.7e-91 340.1 285 63.5
TWI75G1245 Tripterygium wilfordii HOM05D004734 ORTHO05D006019 1.7e-91 340.1 284 64.4
FAN14G4409 Fragaria x ananassa HOM05D004734 ORTHO05D006019 2.3e-91 339.7 282 63.1
AL4G28410 Arabidopsis lyrata HOM05D004734 ORTHO05D006019 3.0e-91 339.3 281 62.3
LjContig00029g0002265 Lotus japonicus HOM05D004734 ORTHO05D006019 3.0e-91 339.3 288 60.8
HanXRQChr16g0508221 Helianthus annuus HOM05D004734 ORTHO05D006019 5.0e-91 338.6 284 62.7
Thhalv10016293m.g Eutrema salsugineum HOM05D004734 ORTHO05D006019 8.6e-91 337.8 281 62.3
Haze_12752 Corylus avellana HOM05D004734 ORTHO05D006019 1.1e-90 337.4 284 62.3
arahy.Tifrunner.gnm1.ann1.LYY30L Arachis hypogaea HOM05D004734 ORTHO05D006019 1.9e-90 336.7 285 62.1
Eucgr.A01088 Eucalyptus grandis HOM05D004734 ORTHO05D006019 1.9e-90 336.7 284 61.3
CARHR126840 Cardamine hirsuta HOM05D004734 ORTHO05D006019 2.5e-90 336.3 281 61.6
CAN.G387.3 Capsicum annuum HOM05D004734 ORTHO05D006019 5.6e-90 335.1 290 60.3
SalBow7G0507 Salvia bowleyana HOM05D004734 ORTHO05D006019 7.3e-90 334.7 289 58.5
PGSC0003DMG400019206 Solanum tuberosum HOM05D004734 ORTHO05D006019 7.3e-90 334.7 284 61.6
vmacro12148 Vaccinium macrocarpon HOM05D004734 ORTHO05D006019 9.5e-90 334.3 327 57.2
BraA03t11112Z Brassica rapa HOM05D004734 ORTHO05D006019 1.6e-89 333.6 303 59.1
HanXRQChr14g0438421 Helianthus annuus HOM05D004734 ORTHO05D006019 2.1e-89 333.2 284 61.6
CDE07G0136 Ceratophyllum demersum HOM05D004734 ORTHO05D006019 3.6e-89 332.4 284 61.3
MELO3C019721.2 Cucumis melo HOM05D004734 ORTHO05D006019 3.6e-89 332.4 292 59.6
FAN02G4553 Fragaria x ananassa HOM05D004734 ORTHO05D006019 3.6e-89 332.4 282 61.7
SGA_v2.0_scaffold73G24401 Striga asiatica HOM05D004734 ORTHO05D006019 3.6e-89 332.4 289 60.2
Carub.0004s1431 Capsella rubella HOM05D004734 ORTHO05D006019 4.7e-89 332.0 281 61.2
BolC3t14542H Brassica oleracea HOM05D004734 ORTHO05D006019 6.2e-89 331.6 304 57.9
FAN05G4875 Fragaria x ananassa HOM05D004734 ORTHO05D006019 6.2e-89 331.6 282 61.3
CsaV3_6G015550 Cucumis sativus L. HOM05D004734 ORTHO05D006019 8.0e-89 331.3 292 59.2
Aa31LG5G4570 Aethionema arabicum HOM05D004734 ORTHO05D006019 1.8e-88 330.1 282 59.9
Oeu054514.1 Olea europaea HOM05D004734 ORTHO05D006019 1.8e-88 330.1 290 61.4
Sed0026816 Sechium edule HOM05D004734 ORTHO05D006019 2.3e-88 329.7 292 59.6
BraA05t20212Z Brassica rapa HOM05D004734 ORTHO05D006019 2.0e-87 326.6 298 57.7
A05p12730 Brassica napus HOM05D004734 ORTHO05D006019 7.5e-87 324.7 290 58.3
Gorai.001G195000 Gossypium raimondii HOM05D004734 ORTHO05D006019 7.5e-87 324.7 285 60.4
AT2G32900 Arabidopsis thaliana HOM05D004734 ORTHO05D006019 9.8e-87 324.3 281 58.7
Actinidia09755 Actinidia chinensis HOM05D004734 ORTHO05D006019 1.3e-86 323.9 266 65.8
Migut.A01159 Erythranthe guttata HOM05D004734 ORTHO05D006019 3.7e-86 322.4 287 59.6
AUR62017577 Chenopodium quinoa HOM05D004734 ORTHO05D006019 3.2e-85 319.3 288 58.0
BolC4t23215H Brassica oleracea HOM05D004734 ORTHO05D006019 4.1e-85 318.9 298 57.0
AUR62015114 Chenopodium quinoa HOM05D004734 ORTHO05D006019 5.4e-85 318.5 288 58.0
Hma1.2p1_2840F.1_g329330 Hydrangea macrophylla HOM05D004734 ORTHO05D006019 5.4e-85 318.5 277 62.5
Hund08442 Selenicereus undatus HOM05D004734 ORTHO05D006019 7.1e-85 318.2 294 56.1
ClCG02G018160 Citrullus lanatus HOM05D004734 ORTHO05D006019 9.2e-85 317.8 283 58.3
ECA236G2537 Erigeron canadensis HOM05D004734 ORTHO05D006019 7.8e-84 314.7 284 57.7
Lj8A131T30 Lonicera japonica HOM05D004734 ORTHO05D006019 5.1e-83 312.0 259 64.9
VMungo0647G1710 Vigna mungo HOM05D004734 ORTHO05D006019 1.1e-82 310.8 263 62.0
EL10Ac9g22816 Beta vulgaris HOM05D004734 ORTHO05D006019 3.3e-82 309.3 289 55.7
Lsat_1_v5_gn_7_94920 Lactuca sativa HOM05D004734 ORTHO05D006019 2.2e-78 296.6 271 59.0
ATR1128G058 Amborella trichopoda HOM05D004734 ORTHO05D006019 8.3e-78 294.7 264 59.1
SEGI_13952 Sequoiadendron giganteum HOM05D004734 ORTHO05D006019 5.1e-75 285.4 301 48.5
QL01p037797 Quercus lobata HOM05D004734 ORTHO05D006019 1.9e-74 283.5 239 61.9
Rhsim06G0169400 Rhododendron simsii HOM05D004734 ORTHO05D006019 2.8e-73 279.6 272 58.8
Atru.chr6.3273 Acer truncatum HOM05D004734 ORTHO05D006019 4.7e-73 278.9 246 61.4
Dinv39761 Davidia involucrata HOM05D004734 ORTHO05D006019 1.1e-72 277.7 240 62.5
Cpa.g.sc132.37 Carica papaya HOM05D004734 ORTHO05D006019 4.0e-72 275.8 259 57.9
Ah.01g001840 Amaranthus hybridus HOM05D004734 ORTHO05D006019 6.8e-72 275.0 289 53.3
Ca_06064_v3 Cicer arietinum L. HOM05D004734 ORTHO05D000733 9.9e-71 271.2 273 56.0
A03p18530 Brassica napus HOM05D004734 ORTHO05D006019 2.9e-70 269.6 241 59.3
C03p21580 Brassica napus HOM05D004734 ORTHO05D006019 1.9e-69 266.9 234 59.4
unitig_8.g4607 Utricularia gibba HOM05D004734 ORTHO05D006019 2.4e-69 266.5 287 51.6
SHI10094 Sapria himalayana HOM05D004734 ORTHO05D006019 3.9e-59 232.6 248 51.2
Mapoly0004s0108 Marchantia polymorpha HOM05D004734 ORTHO05D006019 4.5e-55 219.2 287 40.4
Psat1g135920 Pisum sativum HOM05D004734 ORTHO05D006019 1.3e-54 217.6 180 58.3
Psat0s1468g0040 Pisum sativum HOM05D004734 ORTHO05D006019 8.4e-54 214.9 171 61.4
RcHm_v2.0_Chr1g0340131 Rosa chinensis HOM05D004734 ORTHO05D006019 9.6e-50 201.4 170 60.0
SMO200G0072 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 7.6e-47 191.8 281 37.4
CBR_g30206 Chara braunii HOM05D004734 ORTHO05D006019 2.4e-40 170.2 345 31.0
Psat5g176200 Pisum sativum HOM05D004734 ORTHO05D006019 1.3e-38 164.5 132 62.9
TPR.G146 Trifolium pratense HOM05D004734 ORTHO05D006019 1.1e-37 161.4 130 65.4
Psat0s1468g0080 Pisum sativum HOM05D004734 ORTHO05D006019 1.1e-32 144.8 116 61.2
Pp3c3_5560 Physcomitrium patens HOM05D004734 ORTHO05D006019 2.4e-32 143.7 285 33.7
TPR.G6822 Trifolium pratense HOM05D004734 ORTHO05D006019 2.1e-28 130.6 110 58.2
RcHm_v2.0_Chr1g0340121 Rosa chinensis HOM05D004734 ORTHO05D006019 4.8e-25 119.4 106 64.2
SMO278G0012 Selaginella moellendorffii HOM05D004734 ORTHO05D006019 7.2e-21 105.5 159 37.7
HPP92_028625 Vanilla planifolia HOM05D004734 ORTHO05D006019 7.9e-20 102.1 72 69.4
Psat1g136480 Pisum sativum HOM05D002598 ORTHO05D014892 1.7e-17 94.4 88 54.5
HPP92_028623 Vanilla planifolia HOM05D004734 ORTHO05D006019 7.0e-16 89.0 64 67.2
Cfa026774 Carpinus fangiana HOM05D004734 ORTHO05D126311 2.3e-11 73.9 298 24.8
PRCOL_00004220 Prasinoderma coloniale HOM05D004734 ORTHO05D006019 8.5e-06 55.5 196 24.5


User provided reference genes

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