Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0544800 Oryza sativa ssp. japonica HOM05D004684 ORTHO05D006904 5.9e-308 1060.1 545 100.0
Zm00001eb197630 Zea mays HOM05D004684 ORTHO05D006904 7.2e-282 973.4 546 90.5
PSO384G0234 Papaver somniferum HOM05D004684 ORTHO05D006904 1.1e-234 816.6 555 74.2
Gohir.A09G231100 Gossypium hirsutum HOM05D004684 ORTHO05D006904 3.3e-234 815.1 553 74.3
Gohir.D09G232200 Gossypium hirsutum HOM05D004684 ORTHO05D006904 1.6e-233 812.8 553 74.0
Thecc.04G266300 Theobroma cacao HOM05D004684 ORTHO05D006904 1.8e-232 809.3 552 74.1
TWI09G1097 Tripterygium wilfordii HOM05D004684 ORTHO05D006904 5.3e-232 807.7 558 72.9
arahy.Tifrunner.gnm1.ann1.1TG9FP Arachis hypogaea HOM05D004684 ORTHO05D006904 9.0e-232 807.0 553 73.2
CiPaw.01G176700 Carya illinoinensis HOM05D004684 ORTHO05D006904 9.9e-231 803.5 553 73.4
CSS0041578 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 1.7e-230 802.7 550 74.0
arahy.Tifrunner.gnm1.ann1.14QJGF Arachis hypogaea HOM05D004684 ORTHO05D006904 2.2e-230 802.4 553 72.7
Gorai.006G255000 Gossypium raimondii HOM05D004684 ORTHO05D006904 2.2e-230 802.4 569 71.9
vmacro08564 Vaccinium macrocarpon HOM05D004684 ORTHO05D006904 4.9e-230 801.2 485 80.6
CSS0049189 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 1.4e-229 799.7 550 73.6
Glyma.08G047100 Glycine max HOM05D004684 ORTHO05D006904 2.4e-229 798.9 535 73.8
Manes.03G157750 Manihot esculenta HOM05D004684 ORTHO05D006904 2.4e-229 798.9 552 73.2
CANSAT78G0903 Cannabis sativa HOM05D004684 ORTHO05D006904 7.1e-229 797.3 538 74.0
Glyma.05G240000 Glycine max HOM05D004684 ORTHO05D006904 7.1e-229 797.3 482 80.1
Sc19g0005610 Simmondsia chinensis HOM05D004684 ORTHO05D006904 9.3e-229 797.0 482 80.5
HanXRQChr01g0023061 Helianthus annuus HOM05D004684 ORTHO05D006904 1.6e-228 796.2 548 73.4
Lalb_Chr09g0330801 Lupinus albus HOM05D004684 ORTHO05D006904 3.5e-228 795.0 536 73.3
PGR031G2768 Punica granatum HOM05D004684 ORTHO05D006904 3.5e-228 795.0 493 79.3
AUR62031623 Chenopodium quinoa HOM05D004684 ORTHO05D006904 4.6e-228 794.7 482 79.9
AUR62015690 Chenopodium quinoa HOM05D004684 ORTHO05D006904 6.0e-228 794.3 552 72.3
Prupe.1G050600 Prunus persica HOM05D004684 ORTHO05D006904 6.0e-228 794.3 556 72.5
Sed0004125 Sechium edule HOM05D004684 ORTHO05D006904 6.0e-228 794.3 574 70.7
Aqoxy5G00132 Aquilegia oxysepala HOM05D004684 ORTHO05D006904 1.0e-227 793.5 482 79.7
Ca_04899_v3 Cicer arietinum L. HOM05D004684 ORTHO05D006904 1.0e-227 793.5 530 74.0
Rhsim04G0170900 Rhododendron simsii HOM05D004684 ORTHO05D006904 2.3e-227 792.3 552 72.1
Cpa.g.sc59.16 Carica papaya HOM05D004684 ORTHO05D006904 3.9e-227 791.6 542 73.8
VMungo0251G0467 Vigna mungo HOM05D004684 ORTHO05D006904 5.1e-227 791.2 530 74.0
QL06p021563 Quercus lobata HOM05D004684 ORTHO05D006904 6.7e-227 790.8 571 70.4
TPR.G38256 Trifolium pratense HOM05D004684 ORTHO05D006904 6.7e-227 790.8 535 73.5
Duzib212G0777 Durio zibethinus HOM05D004684 ORTHO05D006904 8.7e-227 790.4 553 72.5
Lj4g0013294 Lotus japonicus HOM05D004684 ORTHO05D006904 1.1e-226 790.0 482 79.9
Phvul.002G322100 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 1.5e-226 789.6 535 72.9
THA.LOC104804573 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 1.5e-226 789.6 486 78.8
Migut.G00560 Erythranthe guttata HOM05D004684 ORTHO05D006904 2.5e-226 788.9 552 72.3
ECA248G0897 Erigeron canadensis HOM05D004684 ORTHO05D006904 4.3e-226 788.1 550 72.9
MD16G1228500 Malus domestica HOM05D004684 ORTHO05D006904 1.6e-225 786.2 562 71.4
Medtr5g055940 Medicago truncatula HOM05D004684 ORTHO05D006904 2.1e-225 785.8 479 78.7
Lj4g0011200 Lotus japonicus HOM05D004684 ORTHO05D006904 2.8e-225 785.4 505 76.8
Ah.04g153790 Amaranthus hybridus HOM05D004684 ORTHO05D006904 6.2e-225 784.3 535 73.5
Ciclev10004652m.g Citrus clementina HOM05D004684 ORTHO05D006904 8.1e-225 783.9 544 73.0
RcHm_v2.0_Chr7g0203561 Rosa chinensis HOM05D004684 ORTHO05D006904 8.1e-225 783.9 558 71.0
ATR0787G095 Amborella trichopoda HOM05D004684 ORTHO05D006904 1.1e-224 783.5 511 75.7
Potri.008G172700 Populus trichocarpa HOM05D004684 ORTHO05D006904 1.4e-224 783.1 556 71.0
Cfa014797 Carpinus fangiana HOM05D004684 ORTHO05D006904 4.0e-224 781.6 597 67.5
Solyc09g090840.3 Solanum lycopersicum HOM05D004684 ORTHO05D006904 4.0e-224 781.6 577 69.8
CARHR100400 Cardamine hirsuta HOM05D004684 ORTHO05D006904 5.8e-223 777.7 512 75.4
FvH4_4g05030 Fragaria vesca HOM05D004684 ORTHO05D006904 5.8e-223 777.7 578 68.7
Haze_11481 Corylus avellana HOM05D004684 ORTHO05D006904 7.6e-223 777.3 559 70.7
MELO3C023021.2 Cucumis melo HOM05D004684 ORTHO05D006904 9.9e-223 776.9 559 71.2
Eucgr.G01176 Eucalyptus grandis HOM05D004684 ORTHO05D006904 1.7e-222 776.2 553 72.3
AT1G48520 Arabidopsis thaliana HOM05D004684 ORTHO05D006904 4.9e-222 774.6 554 71.1
Carub.0003s2695 Capsella rubella HOM05D004684 ORTHO05D006904 8.4e-222 773.9 542 72.1
Thhalv10002467m.g Eutrema salsugineum HOM05D004684 ORTHO05D006904 1.1e-221 773.5 542 71.8
MBI07_g08913_MAGBIO Magnolia biondii HOM05D004684 ORTHO05D006904 1.4e-221 773.1 506 75.5
Nn1g02992 Nelumbo nucifera HOM05D004684 ORTHO05D006904 1.4e-221 773.1 503 76.1
THA.LOC104808741 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 2.4e-221 772.3 488 77.3
AL3G43250 Arabidopsis lyrata HOM05D004684 ORTHO05D006904 7.1e-221 770.8 554 70.9
Sopen09g033800 Solanum pennellii HOM05D004684 ORTHO05D006904 2.7e-220 768.8 601 67.2
Sabra10G0042300 Salix brachista HOM05D004684 ORTHO05D006904 4.6e-220 768.1 522 73.2
Sp3g22110 Schrenkiella parvula HOM05D004684 ORTHO05D006904 7.9e-220 767.3 524 72.5
BcaC01g03327 Brassica carinata HOM05D004684 ORTHO05D006904 1.8e-219 766.1 504 74.2
Eucgr.H02859 Eucalyptus grandis HOM05D004684 ORTHO05D006904 1.6e-217 759.6 553 71.2
ClCG06G007290 Citrullus lanatus HOM05D004684 ORTHO05D006904 2.4e-216 755.7 575 68.3
Nitab4.5_0005154g0090 Nicotiana tabacum HOM05D004684 ORTHO05D006904 3.1e-216 755.4 591 67.2
DCAR_002298 Daucus carota HOM05D004684 ORTHO05D006904 6.9e-216 754.2 458 80.3
A03p43590 Brassica napus HOM05D004684 ORTHO05D006904 9.0e-216 753.8 510 73.1
BraA03t13496Z Brassica rapa HOM05D004684 ORTHO05D006904 4.5e-215 751.5 516 72.3
C03p53620 Brassica napus HOM05D004684 ORTHO05D006904 5.8e-215 751.1 507 73.2
BolC3t17622H Brassica oleracea HOM05D004684 ORTHO05D006904 2.9e-214 748.8 513 72.3
Hund24872 Selenicereus undatus HOM05D004684 ORTHO05D006904 1.0e-211 740.3 645 62.2
Aa31LG8G11000 Aethionema arabicum HOM05D004684 ORTHO05D006904 1.3e-209 733.4 549 68.7
HPP92_005111 Vanilla planifolia HOM05D004684 ORTHO05D006904 8.5e-206 720.7 476 76.3
TAR636G2335 Trochodendron aralioides HOM05D002740 ORTHO05D003126 2.5e-205 719.2 504 71.8
PSO832G1147 Papaver somniferum HOM05D004684 ORTHO05D006904 1.0e-203 713.8 489 73.0
Lalb_Chr05g0222141 Lupinus albus HOM05D004684 ORTHO05D006904 1.3e-203 713.4 443 78.3
Mapoly0107s0036 Marchantia polymorpha HOM05D004684 ORTHO05D006904 2.5e-202 709.1 520 68.5
Lsat_1_v5_gn_1_75460 Lactuca sativa HOM05D004684 ORTHO05D006904 4.3e-202 708.4 553 66.7
Dinv29794 Davidia involucrata HOM05D004684 ORTHO05D006904 1.7e-201 706.4 467 74.9
CDE02G2675 Ceratophyllum demersum HOM05D004684 ORTHO05D006904 2.2e-201 706.1 440 78.4
FAN22G2229 Fragaria x ananassa HOM05D004684 ORTHO05D006904 4.8e-201 704.9 610 61.6
EL10Ac3g06680 Beta vulgaris HOM05D004684 ORTHO05D006904 4.1e-200 701.8 598 61.0
Pp3c21_8670 Physcomitrium patens HOM05D004684 ORTHO05D006904 1.5e-199 699.9 556 65.5
PGSC0003DMG400001555 Solanum tuberosum HOM05D004684 ORTHO05D006904 1.7e-198 696.4 542 66.8
SalBow2G2567 Salvia bowleyana HOM05D004684 ORTHO05D006904 2.1e-196 689.5 552 65.9
Potri.010G064700 Populus trichocarpa HOM05D004684 ORTHO05D006904 2.7e-196 689.1 530 66.2
Nitab4.5_0001041g0120 Nicotiana tabacum HOM05D004684 ORTHO05D006904 1.2e-191 673.7 591 62.3
CAN.G812.19 Capsicum annuum HOM05D004684 ORTHO05D006904 5.9e-191 671.4 487 69.4
Duzib151G0232 Durio zibethinus HOM05D004684 ORTHO05D006904 9.4e-189 664.1 553 63.5
CBR_g20386 Chara braunii HOM05D004684 ORTHO05D006904 2.1e-188 662.9 496 66.1
SEGI_18338 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 1.3e-185 653.7 440 73.2
SMO147G0416 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 3.1e-184 649.0 518 63.3
Nitab4.5_0022682g0010 Nicotiana tabacum HOM05D004684 ORTHO05D006904 4.0e-179 632.1 489 66.9
SMO273G0058 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 1.2e-178 630.6 533 60.2
AagrBONN_evm.TU.Sc2ySwM_368.913 Anthoceros agrestis HOM05D004684 ORTHO05D006904 2.0e-178 629.8 423 73.3
unitig_748.g8291 Utricularia gibba HOM05D004684 ORTHO05D006904 1.3e-174 617.1 528 62.1
Peaxi162Scf00531g00034 Petunia axillaris HOM05D004684 ORTHO05D006904 2.1e-172 609.8 559 60.1
Actinidia20844 Actinidia chinensis HOM05D004684 ORTHO05D006904 3.0e-171 605.9 485 66.2
MCO15G005 Micromonas commoda HOM05D004684 ORTHO05D006904 2.0e-159 566.6 496 58.7
MD13G1223700 Malus domestica HOM05D004684 ORTHO05D006904 1.3e-158 563.9 472 62.3
PRCOL_00005018 Prasinoderma coloniale HOM05D004684 ORTHO05D006904 2.3e-158 563.1 490 58.6
Psat2g106400 Pisum sativum HOM05D004684 ORTHO05D006904 8.6e-158 561.2 512 59.6
CsaV3_2G012390 Cucumis sativus L. HOM05D004684 ORTHO05D006904 1.1e-157 560.8 343 81.9
QL02p071976 Quercus lobata HOM05D004684 ORTHO05D006904 2.3e-155 553.1 455 65.1
Lj3A639G13 Lonicera japonica HOM05D004684 ORTHO05D006904 1.9e-149 533.5 372 75.8
RcHm_v2.0_Chr4g0395911 Rosa chinensis HOM05D004684 ORTHO05D006904 3.0e-142 509.6 322 79.2
BcaB03g14590 Brassica carinata HOM05D004684 ORTHO05D006904 2.2e-137 493.4 322 76.1
Pp3s32_289 Physcomitrium patens HOM05D004684 ORTHO05D006904 6.6e-134 481.9 479 49.3
GSVIVG01027938001 Vitis vinifera HOM05D004684 ORTHO05D006904 5.2e-131 472.2 293 81.2
Oeu059392.1 Olea europaea HOM05D004684 ORTHO05D006904 6.4e-113 412.1 271 77.5
Rhsim02G0163300 Rhododendron simsii HOM05D004684 ORTHO05D006904 1.5e-106 391.0 443 50.1
Psat2g046800 Pisum sativum HOM05D004684 ORTHO05D006904 2.9e-105 386.7 259 73.7
FAN12G2037 Fragaria x ananassa HOM05D004684 ORTHO05D006904 4.3e-101 372.9 390 55.6
MELO3C023047.2 Cucumis melo HOM05D004684 ORTHO05D006904 2.2e-97 360.5 228 77.6
Cc03_g06440 Coffea canephora HOM05D004684 ORTHO05D006904 4.6e-87 326.2 205 78.0
Cc01_g12830 Coffea canephora HOM05D004684 ORTHO05D006904 3.0e-78 297.0 188 76.6
MCO02G423 Micromonas commoda HOM05D004684 ORTHO05D006904 2.4e-75 287.3 471 38.9
COL.COLO4_15980 Corchorus olitorius HOM05D004684 ORTHO05D006904 2.8e-68 263.8 212 61.3
CsaV3_2G012380 Cucumis sativus L. HOM05D004684 ORTHO05D006904 9.1e-67 258.8 208 61.5
RcHm_v2.0_Chr4g0395921 Rosa chinensis HOM05D004684 ORTHO05D006904 5.0e-65 253.1 215 61.4
Lj3C639G0 Lonicera japonica HOM05D004684 ORTHO05D006904 1.9e-64 251.1 216 59.3
SEGI_18835 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 8.3e-60 235.7 141 77.3
Psat2g046760 Pisum sativum HOM05D004684 ORTHO05D006904 5.7e-53 213.0 139 73.4
Cfa025385 Carpinus fangiana HOM05D004684 ORTHO05D123888 8.3e-52 209.1 454 33.5
FvH4_4g04730 Fragaria vesca HOM05D004684 ORTHO05D006904 1.5e-48 198.4 241 49.0
BcaB06g26612 Brassica carinata HOM05D004684 ORTHO05D006904 2.3e-46 191.0 156 59.0
Cre14.g627488 Chlamydomonas reinhardtii HOM05D004684 ORTHO05D006904 2.7e-42 177.6 356 34.6
Phvul.002G091800 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 1.2e-39 168.7 136 63.2
Psat0s5182g0040 Pisum sativum HOM05D004684 ORTHO05D006904 1.3e-36 158.7 89 77.5
Psat3g087000 Pisum sativum HOM05D004684 ORTHO05D006904 1.3e-36 158.7 89 77.5
FAN12G0780 Fragaria x ananassa HOM05D004684 ORTHO05D006904 3.9e-33 147.1 146 54.8
CAN.G154.7 Capsicum annuum HOM05D004684 ORTHO05D010951 3.4e-29 134.0 123 57.7
Oeu059393.1 Olea europaea HOM05D004684 ORTHO05D029065 3.2e-27 127.5 114 64.0
SEGI_09601 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 1.9e-24 118.2 69 81.2
C07p12070 Brassica napus HOM05D004684 ORTHO05D027888 4.0e-22 110.5 150 48.0
DCAR_018323 Daucus carota HOM05D004684 ORTHO05D000311 1.4e-19 102.1 82 59.8
Pp3c22_13460 Physcomitrium patens HOM05D004684 ORTHO05D314634 3.2e-19 100.9 125 44.8
GSVIVG01027937001 Vitis vinifera HOM05D004684 ORTHO05D029065 4.1e-19 100.5 66 80.3
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 9.2e-19 99.4 64 76.6
Cc03_g06430 Coffea canephora HOM05D004684 ORTHO05D006904 9.2e-19 99.4 52 88.5
Cc03_g06450 Coffea canephora HOM05D004684 ORTHO05D029065 1.3e-17 95.5 68 73.5
BraA07t28588Z Brassica rapa HOM05D004684 ORTHO05D027888 1.9e-16 91.7 141 40.4
MD13G1223600 Malus domestica HOM05D004684 ORTHO05D029065 2.4e-14 84.7 57 75.4
A07p08010 Brassica napus HOM05D004684 ORTHO05D027888 3.1e-14 84.3 106 49.1
BcaC01g03330 Brassica carinata HOM05D004684 ORTHO05D006904 5.8e-13 80.1 69 58.0
arahy.Tifrunner.gnm1.ann1.M032NN Arachis hypogaea HOM05D003831 ORTHO05D004440 4.9e-12 77.0 58 70.7
BcaB06g27371 Brassica carinata HOM05D004684 ORTHO05D006904 1.2e-10 72.4 61 59.0
CAN.G1407.1 Capsicum annuum HOM05D004684 ORTHO05D016153 3.0e-09 67.8 46 67.4
arahy.Tifrunner.gnm1.ann1.FY8GKD Arachis hypogaea HOM05D003831 ORTHO05D004440 1.3e-07 62.4 45 68.9
arahy.Tifrunner.gnm1.ann1.PGR81E Arachis hypogaea HOM05D004684 ORTHO05D082538 8.1e-07 59.7 43 65.1
arahy.Tifrunner.gnm1.ann1.G7A5RV Arachis hypogaea HOM05D004684 ORTHO05D083069 5.3e-06 57.0 38 68.4


User provided reference genes

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