Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0544600 Oryza sativa ssp. japonica HOM05D005355 ORTHO05D006591 9.5e-230 800.0 472 100.0
Zm00001eb113700 Zea mays HOM05D005355 ORTHO05D006591 1.5e-126 457.2 420 70.0
MBI06_g20714_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 1.8e-71 274.2 426 48.1
GSVIVG01008886001 Vitis vinifera HOM05D005355 ORTHO05D006591 5.8e-70 269.2 455 44.4
Manes.18G076200 Manihot esculenta HOM05D005355 ORTHO05D006591 4.9e-69 266.2 437 44.4
PGR044G2411 Punica granatum HOM05D005355 ORTHO05D006591 1.4e-68 264.6 446 43.0
Nn5g28219 Nelumbo nucifera HOM05D005355 ORTHO05D006591 2.5e-68 263.8 487 45.0
CiPaw.05G223300 Carya illinoinensis HOM05D005355 ORTHO05D006591 2.3e-66 257.3 445 42.5
MD15G1351600 Malus domestica HOM05D005355 ORTHO05D006591 8.7e-66 255.4 494 40.7
PSO170G1761 Papaver somniferum HOM05D005355 ORTHO05D006591 1.1e-65 255.0 431 42.9
PSO528G0270 Papaver somniferum HOM05D005355 ORTHO05D006591 1.3e-64 251.5 431 42.9
CSS0023513 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 2.1e-64 250.8 458 41.7
QL09p035410 Quercus lobata HOM05D005355 ORTHO05D006591 2.1e-64 250.8 453 41.9
Ciclev10000938m.g Citrus clementina HOM05D005355 ORTHO05D006591 3.7e-64 250.0 445 42.2
VMungo1309G2754 Vigna mungo HOM05D005355 ORTHO05D006591 3.7e-64 250.0 442 42.5
TAR625G0673 Trochodendron aralioides HOM05D005355 ORTHO05D006591 8.2e-64 248.8 429 44.8
MSTRG.326 Avicennia marina HOM05D005355 ORTHO05D006591 1.1e-63 248.4 433 44.6
Thhalv10029139m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 1.1e-63 248.4 426 44.1
CANSAT25G1794 Cannabis sativa HOM05D005355 ORTHO05D006591 2.4e-63 247.3 447 41.2
Potri.002G085000 Populus trichocarpa HOM05D005355 ORTHO05D006591 2.4e-63 247.3 485 41.2
CSS0006134 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 3.1e-63 246.9 461 40.8
CAN.G127.21 Capsicum annuum HOM05D005355 ORTHO05D006591 1.2e-62 245.0 438 42.5
EL10Ac1g01045 Beta vulgaris HOM05D005355 ORTHO05D006591 7.6e-62 242.3 423 43.3
Duzib093G2154 Durio zibethinus HOM05D005355 ORTHO05D006591 7.6e-62 242.3 440 42.0
Oeu062052.1 Olea europaea HOM05D005355 ORTHO05D006591 1.3e-61 241.5 454 42.1
MD00G1157400 Malus domestica HOM05D005355 ORTHO05D006591 4.9e-61 239.6 485 39.4
ECA238G0419 Erigeron canadensis HOM05D005355 ORTHO05D006591 6.5e-61 239.2 426 44.6
CiPaw.06G029200 Carya illinoinensis HOM05D005355 ORTHO05D006591 8.4e-61 238.8 444 40.5
CsaV3_2G014020 Cucumis sativus L. HOM05D005355 ORTHO05D006591 1.9e-60 237.7 448 40.4
MBI15_g20159_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 1.9e-60 237.7 414 44.9
Glyma.04G250500 Glycine max HOM05D005355 ORTHO05D006591 2.5e-60 237.3 431 43.6
Eucgr.F04357 Eucalyptus grandis HOM05D005355 ORTHO05D006591 4.2e-60 236.5 444 39.0
Cc00_g04310 Coffea canephora HOM05D005355 ORTHO05D006591 5.5e-60 236.1 404 44.6
SGA_v2.0_scaffold122G33176 Striga asiatica HOM05D005355 ORTHO05D006591 5.5e-60 236.1 419 46.3
Sabra02G0066400 Salix brachista HOM05D005355 ORTHO05D006591 7.1e-60 235.7 463 38.9
Ca_15194_v3 Cicer arietinum L. HOM05D005355 ORTHO05D006591 1.2e-59 235.0 429 42.9
arahy.Tifrunner.gnm1.ann1.SCI4MN Arachis hypogaea HOM05D005355 ORTHO05D006591 4.6e-59 233.0 445 43.8
Thecc.08G123400 Theobroma cacao HOM05D005355 ORTHO05D006591 6.0e-59 232.6 463 40.2
Phvul.009G124200 Phaseolus vulgaris HOM05D005355 ORTHO05D006591 7.9e-59 232.3 420 43.1
ClCG08G005570 Citrullus lanatus HOM05D005355 ORTHO05D006591 1.3e-58 231.5 427 45.2
Prupe.1G500200 Prunus persica HOM05D005355 ORTHO05D006591 1.8e-58 231.1 444 41.2
FAN27G0453 Fragaria x ananassa HOM05D005355 ORTHO05D006591 2.3e-58 230.7 430 39.8
TWI56G0611 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 5.1e-58 229.6 414 41.1
CDE06G1640 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 6.7e-58 229.2 402 45.5
Cpa.g.sc36.50 Carica papaya HOM05D005355 ORTHO05D006591 8.7e-58 228.8 439 39.2
arahy.Tifrunner.gnm1.ann1.Y2U2DK Arachis hypogaea HOM05D005355 ORTHO05D006591 1.1e-57 228.4 439 44.0
Hund27026 Selenicereus undatus HOM05D005355 ORTHO05D006591 1.1e-57 228.4 464 39.7
Glyma.06G112300 Glycine max HOM05D005355 ORTHO05D006591 1.5e-57 228.0 426 42.7
Aqoxy6G00187 Aquilegia oxysepala HOM05D005355 ORTHO05D006591 3.3e-57 226.9 429 42.2
Lsat_1_v5_gn_5_101461 Lactuca sativa HOM05D005355 ORTHO05D006591 4.3e-57 226.5 421 40.9
MBI15_g24178_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 5.7e-57 226.1 414 44.2
Sopen11g007660 Solanum pennellii HOM05D005355 ORTHO05D006591 1.3e-56 224.9 424 39.9
AL1G52440 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 2.8e-56 223.8 432 40.3
HanXRQChr04g0109451 Helianthus annuus HOM05D005355 ORTHO05D006591 3.7e-56 223.4 421 41.1
ATR0104G007 Amborella trichopoda HOM05D005355 ORTHO05D006591 6.3e-56 222.6 478 41.2
TWI12G0790 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 8.2e-56 222.2 414 40.8
Gorai.009G245100 Gossypium raimondii HOM05D005355 ORTHO05D006591 1.8e-55 221.1 445 38.2
FAN24G2565 Fragaria x ananassa HOM05D005355 ORTHO05D006591 4.1e-55 219.9 435 41.6
Solyc11g012920.3 Solanum lycopersicum HOM05D005355 ORTHO05D006591 5.3e-55 219.5 424 39.9
FAN20G1264 Fragaria x ananassa HOM05D005355 ORTHO05D006591 1.5e-54 218.0 432 42.1
Medtr3g072480 Medicago truncatula HOM05D005355 ORTHO05D006591 3.4e-54 216.9 442 39.8
Gohir.A06G043600 Gossypium hirsutum HOM05D005355 ORTHO05D006591 4.5e-54 216.5 461 38.6
Dinv27329 Davidia involucrata HOM05D005355 ORTHO05D006591 1.0e-53 215.3 428 40.4
Duzib116G0422 Durio zibethinus HOM05D005355 ORTHO05D006591 1.3e-53 214.9 456 39.3
Gorai.010G049600 Gossypium raimondii HOM05D005355 ORTHO05D006591 5.0e-53 213.0 451 38.6
C06p00770 Brassica napus HOM05D005355 ORTHO05D006591 8.5e-53 212.2 405 40.2
Thhalv10011453m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 8.5e-53 212.2 408 39.2
CARHR259390 Cardamine hirsuta HOM05D005355 ORTHO05D006591 1.1e-52 211.8 424 42.0
Psat5g132440 Pisum sativum HOM05D005355 ORTHO05D006591 1.4e-52 211.5 467 39.0
A10p07350 Brassica napus HOM05D005355 ORTHO05D006591 1.9e-52 211.1 407 41.5
BraSC36t46079Z Brassica rapa HOM05D005355 ORTHO05D006591 3.2e-52 210.3 407 41.5
Sc01g0001210 Simmondsia chinensis HOM05D005355 ORTHO05D006591 3.2e-52 210.3 402 41.5
AT1G44780 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 7.2e-52 209.1 414 40.6
Migut.F01876 Erythranthe guttata HOM05D005355 ORTHO05D006591 9.4e-52 208.8 451 41.9
Lj1g0013612 Lotus japonicus HOM05D005355 ORTHO05D006591 1.6e-51 208.0 445 39.1
Potri.005G176400 Populus trichocarpa HOM05D005355 ORTHO05D006591 2.1e-51 207.6 517 35.8
RcHm_v2.0_Chr6g0295601 Rosa chinensis HOM05D005355 ORTHO05D006591 2.1e-51 207.6 431 38.5
Sp1g33640 Schrenkiella parvula HOM05D005355 ORTHO05D006591 7.9e-51 205.7 420 40.2
Sabra05G0133000 Salix brachista HOM05D005355 ORTHO05D006591 3.0e-50 203.8 547 35.6
Gohir.A05G234400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 3.9e-50 203.4 430 38.6
Lalb_Chr08g0241491 Lupinus albus HOM05D005355 ORTHO05D006591 6.7e-50 202.6 446 39.0
TPR.G24014 Trifolium pratense HOM05D005355 ORTHO05D006591 6.7e-50 202.6 435 39.5
Sp6g09690 Schrenkiella parvula HOM05D005355 ORTHO05D006591 1.1e-49 201.8 427 39.1
BcaB07g33934 Brassica carinata HOM05D005355 ORTHO05D006591 1.5e-49 201.4 394 40.4
Gohir.D05G236700 Gossypium hirsutum HOM05D005355 ORTHO05D006591 4.3e-49 199.9 437 37.1
THA.LOC104817273 Tarenaya hassleriana HOM05D005355 ORTHO05D006591 5.7e-49 199.5 415 40.5
BolC6t35219H Brassica oleracea HOM05D005355 ORTHO05D006591 9.7e-49 198.7 394 39.3
Gohir.D06G044400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 2.2e-48 197.6 451 37.5
AL6G42080 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 1.8e-47 194.5 436 38.5
FAN15G2971 Fragaria x ananassa HOM05D005355 ORTHO05D006591 1.8e-47 194.5 459 36.8
DCAR_011614 Daucus carota HOM05D005355 ORTHO05D006591 2.0e-46 191.0 329 46.2
MELO3C010600.2 Cucumis melo HOM05D005355 ORTHO05D006591 3.4e-46 190.3 410 37.8
Aa31LG9G14260 Aethionema arabicum HOM05D005355 ORTHO05D006591 7.7e-46 189.1 411 38.0
Lj4A622G14 Lonicera japonica HOM05D005355 ORTHO05D006591 7.7e-46 189.1 396 39.1
BcaC08g42867 Brassica carinata HOM05D005355 ORTHO05D006591 1.3e-45 188.3 406 37.9
CARHR036040 Cardamine hirsuta HOM05D005355 ORTHO05D006591 1.7e-45 188.0 419 37.9
Cfa016002 Carpinus fangiana HOM05D005355 ORTHO05D006591 1.1e-44 185.3 370 40.8
Carub.0006s2687 Capsella rubella HOM05D005355 ORTHO05D006591 2.5e-44 184.1 415 38.1
AT4G08310 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 3.2e-44 183.7 402 38.6
Atru.chr13.1433 Acer truncatum HOM05D005355 ORTHO05D006591 1.6e-43 181.4 275 46.9
unitig_52.g17510 Utricularia gibba HOM05D005355 ORTHO05D006467 2.1e-43 181.0 483 35.2
Nitab4.5_0001803g0130 Nicotiana tabacum HOM05D005355 ORTHO05D006591 3.6e-43 180.3 375 41.1
RhsimUnG0093800 Rhododendron simsii HOM05D005355 ORTHO05D006591 1.4e-42 178.3 414 37.4
Haze_00460 Corylus avellana HOM05D005355 ORTHO05D006591 1.2e-38 165.2 350 41.1
FvH4_2g26711 Fragaria vesca HOM05D005355 ORTHO05D006591 1.5e-38 164.9 396 38.1
AUR62019052 Chenopodium quinoa HOM05D005355 ORTHO05D006591 5.9e-38 162.9 389 38.0
SHI29459 Sapria himalayana HOM05D005355 ORTHO05D006591 5.9e-38 162.9 443 36.1
Sed0010827 Sechium edule HOM05D005355 ORTHO05D006591 5.5e-36 156.4 365 41.4
vmacro00824 Vaccinium macrocarpon HOM05D005355 ORTHO05D006591 1.6e-35 154.8 614 30.1
CDE06G0823 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 1.7e-29 134.8 140 59.3
COL.COLO4_35946 Corchorus olitorius HOM05D005355 ORTHO05D006591 5.5e-28 129.8 394 33.5
SMO230G0121 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 5.5e-28 129.8 461 30.8
CDE06G1231 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 2.1e-27 127.9 268 41.4
Pp3c21_16190 Physcomitrium patens HOM05D005355 ORTHO05D006591 8.0e-27 125.9 444 33.3
AagrBONN_evm.TU.Sc2ySwM_362.1810 Anthoceros agrestis HOM05D005355 ORTHO05D006591 5.2e-26 123.2 513 29.6
Carub.0001s3530 Capsella rubella HOM05D005355 ORTHO05D006591 6.8e-26 122.9 109 58.7
MBI15_g19197_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 6.8e-26 122.9 94 69.1
AUR62027892 Chenopodium quinoa HOM05D005355 ORTHO05D006591 1.5e-25 121.7 363 38.0
MBI15_g20157_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D010248 2.0e-25 121.3 264 38.3
HPP92_011157 Vanilla planifolia HOM05D005355 ORTHO05D006591 3.7e-24 117.1 412 33.5
Mapoly0004s0202 Marchantia polymorpha HOM05D005355 ORTHO05D006591 2.4e-23 114.4 473 29.0
CBR_g29492 Chara braunii HOM05D005355 ORTHO05D006591 2.1e-19 101.3 114 49.1
SMO367G1068 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 2.7e-19 100.9 412 28.9
Peaxi162Scf00914g00033 Petunia axillaris HOM05D005355 ORTHO05D006591 1.4e-15 88.6 268 31.3
SMO230G0058 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 5.4e-15 86.7 151 38.4
arahy.Tifrunner.gnm1.ann1.V8LFJN Arachis hypogaea HOM05D005355 ORTHO05D006591 3.5e-14 84.0 300 32.3
Nn8g40262 Nelumbo nucifera HOM05D005355 ORTHO05D006591 1.2e-11 75.5 56 64.3
DCAR_011615 Daucus carota HOM05D005355 ORTHO05D006591 3.6e-11 73.9 56 60.7
Atru.chr13.1434 Acer truncatum HOM05D005355 ORTHO05D006591 4.7e-11 73.6 167 37.1
MBI15_g42534_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 2.3e-10 71.2 61 60.7
Nitab4.5_0001273g0020 Nicotiana tabacum HOM05D005355 ORTHO05D006591 3.4e-09 67.4 190 36.8
Nitab4.5_0001803g0110 Nicotiana tabacum HOM05D005355 ORTHO05D006591 4.4e-09 67.0 59 55.9
SGA_v2.0_scaffold340G49302 Striga asiatica HOM05D005355 ORTHO05D006591 5.7e-09 66.6 134 41.0
Nitab4.5_0001273g0010 Nicotiana tabacum HOM05D005355 ORTHO05D006591 9.8e-09 65.9 59 55.9
Cpa.g.sc36.52 Carica papaya HOM05D005355 ORTHO05D006591 2.4e-07 61.2 161 31.7
Cre12.g539750 Chlamydomonas reinhardtii HOM05D005355 ORTHO05D006591 1.6e-06 58.5 120 37.5
SGA_v2.0_scaffold340G49301 Striga asiatica HOM05D005355 ORTHO05D006591 3.5e-06 57.4 67 52.2


User provided reference genes

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