Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0544100 Oryza sativa ssp. japonica HOM05D006774 ORTHO05D008411 4.7e-248 860.9 490 100.0
Zm00001eb197590 Zea mays HOM05D006774 ORTHO05D008411 6.4e-120 435.3 359 69.1
MBI04_g29615_MAGBIO Magnolia biondii HOM05D006774 ORTHO05D008411 2.9e-64 250.4 405 40.5
QL03p007112 Quercus lobata HOM05D006774 ORTHO05D008411 1.3e-59 235.0 408 38.0
Thecc.05G302500 Theobroma cacao HOM05D006774 ORTHO05D008411 6.3e-59 232.6 365 38.9
arahy.Tifrunner.gnm1.ann1.ST8CS6 Arachis hypogaea HOM05D006774 ORTHO05D008411 3.4e-57 226.9 370 38.9
arahy.Tifrunner.gnm1.ann1.V1E923 Arachis hypogaea HOM05D006774 ORTHO05D008411 4.5e-57 226.5 370 38.9
Potri.013G021500 Populus trichocarpa HOM05D006774 ORTHO05D008411 5.9e-57 226.1 404 38.9
BraA01t02861Z Brassica rapa HOM05D006774 ORTHO05D008411 1.0e-56 225.3 389 37.3
Cfa006593 Carpinus fangiana HOM05D006774 ORTHO05D008411 2.2e-56 224.2 391 37.9
Sed0009699 Sechium edule HOM05D006774 ORTHO05D008411 2.2e-56 224.2 381 38.3
ATR0332G083 Amborella trichopoda HOM05D006774 ORTHO05D008411 3.8e-56 223.4 401 36.4
PSO478G4979 Papaver somniferum HOM05D006774 ORTHO05D008411 3.8e-56 223.4 397 36.5
A01p27210 Brassica napus HOM05D006774 ORTHO05D008411 5.0e-56 223.0 388 36.9
PSO782G5565 Papaver somniferum HOM05D006774 ORTHO05D008411 6.5e-56 222.6 392 36.5
Thhalv10023440m.g Eutrema salsugineum HOM05D006774 ORTHO05D008411 8.5e-56 222.2 391 36.3
CSS0019331 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 1.1e-55 221.9 409 38.4
Eucgr.C01256 Eucalyptus grandis HOM05D006774 ORTHO05D008411 1.4e-55 221.5 404 38.6
BcaC09g49602 Brassica carinata HOM05D006774 ORTHO05D008411 2.5e-55 220.7 392 36.2
GSVIVG01000080001 Vitis vinifera HOM05D006774 ORTHO05D008411 4.2e-55 219.9 321 43.0
Lalb_Chr18g0045661 Lupinus albus HOM05D006774 ORTHO05D008411 1.2e-54 218.4 375 38.9
TAR633G1323 Trochodendron aralioides HOM05D006774 ORTHO05D008411 1.2e-54 218.4 412 37.6
BcaB04g20150 Brassica carinata HOM05D006774 ORTHO05D008411 1.6e-54 218.0 349 39.8
C01p34610 Brassica napus HOM05D006774 ORTHO05D008411 1.6e-54 218.0 392 36.0
BolC1t03432H Brassica oleracea HOM05D006774 ORTHO05D008411 1.6e-54 218.0 392 36.0
Atru.chr2.394 Acer truncatum HOM05D006774 ORTHO05D008411 3.6e-54 216.9 390 38.2
Aqoxy5G00494 Aquilegia oxysepala HOM05D006774 ORTHO05D008411 3.6e-54 216.9 389 36.5
AL1G65540 Arabidopsis lyrata HOM05D006774 ORTHO05D008411 3.6e-54 216.9 392 35.7
PGR031G3046 Punica granatum HOM05D006774 ORTHO05D008411 3.6e-54 216.9 407 36.9
Haze_04191 Corylus avellana HOM05D006774 ORTHO05D008411 6.1e-54 216.1 367 37.9
Gohir.A13G107700 Gossypium hirsutum HOM05D006774 ORTHO05D008411 6.1e-54 216.1 390 34.6
SpUn0004_0080 Schrenkiella parvula HOM05D006774 ORTHO05D008411 7.9e-54 215.7 348 38.2
SpUn0066_0030 Schrenkiella parvula HOM05D006774 ORTHO05D008411 7.9e-54 215.7 348 38.2
CAN.G1034.42 Capsicum annuum HOM05D006774 ORTHO05D008411 1.8e-53 214.5 403 36.7
EL10Ac4g09357 Beta vulgaris HOM05D006774 ORTHO05D008411 2.3e-53 214.2 407 34.9
Cpa.g.sc48.60 Carica papaya HOM05D006774 ORTHO05D008411 6.7e-53 212.6 388 36.1
FAN05G0244 Fragaria x ananassa HOM05D006774 ORTHO05D008411 8.8e-53 212.2 360 38.9
Glyma.03G237400 Glycine max HOM05D006774 ORTHO05D008411 8.8e-53 212.2 396 37.6
ClCG03G016980 Citrullus lanatus HOM05D006774 ORTHO05D008411 2.0e-52 211.1 375 36.8
CiPaw.10G139100 Carya illinoinensis HOM05D006774 ORTHO05D008411 2.6e-52 210.7 387 37.0
FAN05G2700 Fragaria x ananassa HOM05D006774 ORTHO05D008411 2.6e-52 210.7 357 37.8
CANSAT54G0432 Cannabis sativa HOM05D006774 ORTHO05D008411 3.3e-52 210.3 411 33.8
Carub.0002s0819 Capsella rubella HOM05D006774 ORTHO05D008411 3.3e-52 210.3 384 37.2
FvH4_6g06010 Fragaria vesca HOM05D006774 ORTHO05D008411 3.3e-52 210.3 347 39.2
Gorai.013G124300 Gossypium raimondii HOM05D006774 ORTHO05D008411 3.3e-52 210.3 347 36.0
Sopen01g042680 Solanum pennellii HOM05D006774 ORTHO05D008411 4.4e-52 209.9 385 37.4
Glyma.19G235000 Glycine max HOM05D006774 ORTHO05D008411 5.7e-52 209.5 370 37.6
FAN02G0725 Fragaria x ananassa HOM05D006774 ORTHO05D008411 7.4e-52 209.1 347 38.9
FAN09G1854 Fragaria x ananassa HOM05D006774 ORTHO05D008411 7.4e-52 209.1 390 36.7
Duzib177G0798 Durio zibethinus HOM05D006774 ORTHO05D008411 9.7e-52 208.8 365 36.7
VMungo0540G2441 Vigna mungo HOM05D006774 ORTHO05D008411 1.3e-51 208.4 368 37.8
Ah.06g189400 Amaranthus hybridus HOM05D006774 ORTHO05D008411 1.7e-51 208.0 373 36.5
Ca_05814_v3 Cicer arietinum L. HOM05D006774 ORTHO05D008411 1.7e-51 208.0 360 38.6
MD12G1218600 Malus domestica HOM05D006774 ORTHO05D008411 1.7e-51 208.0 413 35.4
PGSC0003DMG400024686 Solanum tuberosum HOM05D006774 ORTHO05D008411 1.7e-51 208.0 385 37.1
CARHR284430 Cardamine hirsuta HOM05D006774 ORTHO05D008411 4.8e-51 206.5 348 36.2
Nn1g02268 Nelumbo nucifera HOM05D006774 ORTHO05D008411 4.8e-51 206.5 361 37.7
AT1G54990 Arabidopsis thaliana HOM05D006774 ORTHO05D008411 6.3e-51 206.1 348 36.8
Lj1g0013332 Lotus japonicus HOM05D006774 ORTHO05D008411 6.3e-51 206.1 370 37.0
Hund07075 Selenicereus undatus HOM05D006774 ORTHO05D008411 8.2e-51 205.7 368 37.0
THA.LOC104805877 Tarenaya hassleriana HOM05D006774 ORTHO05D008411 1.4e-50 204.9 390 36.4
TWI56G0431 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 1.4e-50 204.9 403 35.2
MSTRG.20428 Avicennia marina HOM05D006774 ORTHO05D008411 2.4e-50 204.1 391 36.8
TWI12G1162 Tripterygium wilfordii HOM05D006774 ORTHO05D008411 2.4e-50 204.1 383 36.3
Aa31LG2G11700 Aethionema arabicum HOM05D006774 ORTHO05D008411 4.1e-50 203.4 392 35.2
CsaV3_1G038960 Cucumis sativus L. HOM05D006774 ORTHO05D008411 4.1e-50 203.4 393 34.1
HanXRQChr11g0338551 Helianthus annuus HOM05D006774 ORTHO05D008411 9.1e-50 202.2 374 36.4
Ciclev10001021m.g Citrus clementina HOM05D006774 ORTHO05D008411 1.2e-49 201.8 400 35.8
Prupe.6G324900 Prunus persica HOM05D006774 ORTHO05D008411 1.6e-49 201.4 369 37.4
Sc09g0003160 Simmondsia chinensis HOM05D006774 ORTHO05D008411 2.6e-49 200.7 382 35.3
Duzib128G0809 Durio zibethinus HOM05D006774 ORTHO05D008411 3.5e-49 200.3 412 34.2
MD04G1204900 Malus domestica HOM05D006774 ORTHO05D008411 3.5e-49 200.3 402 35.8
Medtr7g113420 Medicago truncatula HOM05D006774 ORTHO05D008411 7.7e-49 199.1 354 38.4
COL.COLO4_13460 Corchorus olitorius HOM05D006774 ORTHO05D008411 1.3e-48 198.4 324 36.7
CSS0040526 Camellia sinensis var. sinensis HOM05D006774 ORTHO05D008411 5.0e-48 196.4 368 38.3
Manes.09G167600 Manihot esculenta HOM05D006774 ORTHO05D008411 1.5e-47 194.9 370 35.7
RcHm_v2.0_Chr3g0454971 Rosa chinensis HOM05D006774 ORTHO05D008411 2.5e-47 194.1 347 37.5
TPR.G33221 Trifolium pratense HOM05D006774 ORTHO05D008411 3.2e-47 193.7 297 40.4
Phvul.006G091800 Phaseolus vulgaris HOM05D006774 ORTHO05D008411 9.4e-47 192.2 364 36.0
MELO3C015322.2 Cucumis melo HOM05D006774 ORTHO05D008411 2.7e-46 190.7 394 34.3
Migut.N02011 Erythranthe guttata HOM05D006774 ORTHO05D008411 3.6e-46 190.3 413 34.1
Lsat_1_v5_gn_9_86761 Lactuca sativa HOM05D006774 ORTHO05D008411 1.0e-45 188.7 353 35.4
Gohir.D13G110900 Gossypium hirsutum HOM05D006774 ORTHO05D008411 1.8e-45 188.0 289 37.7
AUR62000820 Chenopodium quinoa HOM05D006774 ORTHO05D008411 3.0e-45 187.2 326 35.3
Sabra13G0023900 Salix brachista HOM05D006774 ORTHO05D008411 5.2e-45 186.4 329 37.7
CDE05G2690 Ceratophyllum demersum HOM05D006774 ORTHO05D008411 4.4e-44 183.3 360 33.3
RhsimUnG0226700 Rhododendron simsii HOM05D006774 ORTHO05D008411 5.7e-44 183.0 354 37.3
ECA236G1211 Erigeron canadensis HOM05D000208 ORTHO05D000130 1.7e-43 181.4 287 39.4
vmacro05013 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 3.7e-43 180.3 328 37.8
vmacro23279 Vaccinium macrocarpon HOM05D006774 ORTHO05D008411 3.7e-43 180.3 328 37.8
Psat0s3041g0040 Pisum sativum HOM05D006774 ORTHO05D008411 4.8e-43 179.9 362 36.7
Cc02_g33360 Coffea canephora HOM05D006774 ORTHO05D008411 6.3e-43 179.5 354 35.6
AUR62005151 Chenopodium quinoa HOM05D006774 ORTHO05D008411 1.6e-41 174.9 273 37.7
Lj9C83T13 Lonicera japonica HOM05D006774 ORTHO05D008411 1.2e-38 165.2 357 35.6
Pp3c11_22860 Physcomitrium patens HOM05D006774 ORTHO05D008411 2.7e-38 164.1 365 32.3
Lj9C82T10 Lonicera japonica HOM05D006774 ORTHO05D008411 1.8e-37 161.4 323 35.6
Actinidia05698 Actinidia chinensis HOM05D006774 ORTHO05D008411 8.3e-35 152.5 181 47.5
Lj9C84T1 Lonicera japonica HOM05D006774 ORTHO05D008411 4.1e-34 150.2 323 34.4
HPP92_006104 Vanilla planifolia HOM05D006774 ORTHO05D008411 3.2e-31 140.6 167 43.1
SMO145G0196 Selaginella moellendorffii HOM05D006774 ORTHO05D008411 5.2e-29 133.3 379 29.6
Dinv40294 Davidia involucrata HOM05D006774 ORTHO05D008411 1.1e-23 115.5 275 34.2
unitig_736.g22755 Utricularia gibba HOM05D006774 ORTHO05D008411 1.2e-22 112.1 412 26.2
PSO478G2742 Papaver somniferum HOM05D006774 ORTHO05D008411 1.3e-16 92.0 312 28.8
PSO782G1046 Papaver somniferum HOM05D006774 ORTHO05D008411 1.1e-15 89.0 294 30.3
Peaxi162Scf00037g00517 Petunia axillaris HOM05D006774 ORTHO05D008411 4.0e-13 80.5 82 45.1
Atru.chr12.689 Acer truncatum HOM05D006774 ORTHO05D008411 2.5e-07 61.2 179 30.7
Nitab4.5_0010934g0020 Nicotiana tabacum HOM05D006774 ORTHO05D008411 2.8e-06 57.8 66 39.4


User provided reference genes

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