Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0543800 Oryza sativa ssp. japonica HOM05D001087 ORTHO05D005406 7.4e-39 163.3 77 100.0
Zm00001eb197740 Zea mays HOM05D001087 ORTHO05D005406 6.2e-30 133.7 77 77.9
HPP92_021630 Vanilla planifolia HOM05D001087 ORTHO05D005406 2.1e-22 108.6 73 67.1
HPP92_021688 Vanilla planifolia HOM05D001087 ORTHO05D005406 2.8e-22 108.2 73 67.1
PSO017G2606 Papaver somniferum HOM05D001087 ORTHO05D005406 6.3e-22 107.1 71 64.8
PSO478G2418 Papaver somniferum HOM05D001087 ORTHO05D005406 6.3e-22 107.1 71 64.8
Nn4g22026 Nelumbo nucifera HOM05D001087 ORTHO05D005406 1.1e-21 106.3 71 64.8
TAR629G2385 Trochodendron aralioides HOM05D001087 ORTHO05D005406 1.1e-21 106.3 71 66.2
Aqoxy3G01996 Aquilegia oxysepala HOM05D001087 ORTHO05D005406 6.9e-21 103.6 72 62.5
Glyma.16G044400 Glycine max HOM05D001087 ORTHO05D005406 1.0e-19 99.8 71 62.0
Potri.014G141100 Populus trichocarpa HOM05D001087 ORTHO05D005406 1.3e-19 99.4 71 60.6
Sabra14G0106400 Salix brachista HOM05D001087 ORTHO05D005406 2.2e-19 98.6 71 59.2
Actinidia19533 Actinidia chinensis HOM05D001087 ORTHO05D005406 3.8e-19 97.8 71 57.7
Manes.04G095500 Manihot esculenta HOM05D001087 ORTHO05D005406 3.8e-19 97.8 71 62.0
arahy.Tifrunner.gnm1.ann1.65DI7F Arachis hypogaea HOM05D001087 ORTHO05D005406 5.0e-19 97.4 71 57.7
arahy.Tifrunner.gnm1.ann1.C4QHPC Arachis hypogaea HOM05D001087 ORTHO05D005406 5.0e-19 97.4 71 57.7
ClCG05G012390 Citrullus lanatus HOM05D001087 ORTHO05D005406 5.0e-19 97.4 71 59.2
Lj7A620G39 Lonicera japonica HOM05D001087 ORTHO05D005406 5.0e-19 97.4 73 61.6
Lj1g0002000 Lotus japonicus HOM05D001087 ORTHO05D005406 5.0e-19 97.4 71 59.2
Lalb_Chr14g0364241 Lupinus albus HOM05D001087 ORTHO05D005406 5.0e-19 97.4 71 57.7
VMungo1383G1594 Vigna mungo HOM05D001087 ORTHO05D005406 5.0e-19 97.4 71 59.2
RcHm_v2.0_Chr2g0176781 Rosa chinensis HOM05D001087 ORTHO05D005406 6.5e-19 97.1 71 59.2
CSS0025073 Camellia sinensis var. sinensis HOM05D001087 ORTHO05D005406 8.5e-19 96.7 71 59.2
Ca_08243_v3 Cicer arietinum L. HOM05D001087 ORTHO05D005406 8.5e-19 96.7 71 57.7
FvH4_6g54490 Fragaria vesca HOM05D001087 ORTHO05D005406 8.5e-19 96.7 71 57.7
FAN05G2313 Fragaria x ananassa HOM05D001087 ORTHO05D005406 8.5e-19 96.7 71 57.7
FAN14G5757 Fragaria x ananassa HOM05D001087 ORTHO05D005406 8.5e-19 96.7 71 57.7
Gohir.A08G038200 Gossypium hirsutum HOM05D001087 ORTHO05D005406 8.5e-19 96.7 71 56.3
QL02p063912 Quercus lobata HOM05D001087 ORTHO05D005406 8.5e-19 96.7 71 60.6
Sed0004915 Sechium edule HOM05D001087 ORTHO05D005406 8.5e-19 96.7 71 59.2
ATR0582G201 Amborella trichopoda HOM05D001087 ORTHO05D005406 1.1e-18 96.3 71 60.6
CiPaw.03G079200 Carya illinoinensis HOM05D001087 ORTHO05D005406 1.1e-18 96.3 71 59.2
Gohir.D08G048400 Gossypium hirsutum HOM05D001087 ORTHO05D005406 1.1e-18 96.3 71 56.3
Gorai.004G047900 Gossypium raimondii HOM05D001087 ORTHO05D005406 1.1e-18 96.3 71 56.3
EL10Ac6g13922 Beta vulgaris HOM05D001087 ORTHO05D005406 1.4e-18 95.9 72 56.9
ECA246G3450 Erigeron canadensis HOM05D001087 ORTHO05D005406 1.9e-18 95.5 69 63.8
FAN27G2264 Fragaria x ananassa HOM05D001087 ORTHO05D005406 1.9e-18 95.5 71 56.3
Oeu062515.1 Olea europaea HOM05D001087 ORTHO05D005406 1.9e-18 95.5 71 60.6
MBI07_g11062_MAGBIO Magnolia biondii HOM05D001087 ORTHO05D005406 2.5e-18 95.1 71 59.2
GSVIVG01032937001 Vitis vinifera HOM05D001087 ORTHO05D005406 2.5e-18 95.1 71 57.7
Duzib138G0185 Durio zibethinus HOM05D001087 ORTHO05D005406 3.2e-18 94.7 71 54.9
Phvul.001G097600 Phaseolus vulgaris HOM05D001087 ORTHO05D005406 3.2e-18 94.7 71 57.7
CsaV3_3G020140 Cucumis sativus L. HOM05D001087 ORTHO05D005406 4.2e-18 94.4 69 59.4
Glyma.19G107500 Glycine max HOM05D001087 ORTHO05D005406 4.2e-18 94.4 71 56.3
MD09G1000300 Malus domestica HOM05D001087 ORTHO05D005406 5.5e-18 94.0 69 58.0
Atru.chr6.2747 Acer truncatum HOM05D001087 ORTHO05D005406 7.2e-18 93.6 71 56.3
Peaxi162Scf00420g00943 Petunia axillaris HOM05D001087 ORTHO05D005406 7.2e-18 93.6 71 59.2
Haze_14337 Corylus avellana HOM05D001087 ORTHO05D005406 9.3e-18 93.2 71 57.7
AUR62032520 Chenopodium quinoa HOM05D001087 ORTHO05D005406 2.1e-17 92.0 73 58.9
Nitab4.5_0000519g0370 Nicotiana tabacum HOM05D001087 ORTHO05D005406 2.1e-17 92.0 71 56.3
Psat0s4626g0040 Pisum sativum HOM05D001087 ORTHO05D005406 2.1e-17 92.0 71 54.9
vmacro22106 Vaccinium macrocarpon HOM05D001087 ORTHO05D005406 2.7e-17 91.7 73 50.7
CAN.G473.166 Capsicum annuum HOM05D001087 ORTHO05D005406 3.6e-17 91.3 71 53.5
TPR.G31052 Trifolium pratense HOM05D001087 ORTHO05D005406 3.6e-17 91.3 71 54.9
Cpa.g.sc70.28 Carica papaya HOM05D001087 ORTHO05D005406 4.6e-17 90.9 71 54.9
Medtr7g084880 Medicago truncatula HOM05D001087 ORTHO05D005406 7.9e-17 90.1 71 53.5
MELO3C014745.2 Cucumis melo HOM05D001087 ORTHO05D005406 1.0e-16 89.7 71 57.7
DCAR_000958 Daucus carota HOM05D001087 ORTHO05D005406 1.0e-16 89.7 71 54.9
CANSAT64G1951 Cannabis sativa HOM05D001087 ORTHO05D005406 1.3e-16 89.4 71 54.9
Ciclev10014134m.g Citrus clementina HOM05D001087 ORTHO05D005406 1.8e-16 89.0 69 56.5
TWI32G0903 Tripterygium wilfordii HOM05D001087 ORTHO05D005406 1.8e-16 89.0 69 55.1
Sopen02g039270 Solanum pennellii HOM05D001087 ORTHO05D005406 2.3e-16 88.6 71 53.5
Thecc.04G053100 Theobroma cacao HOM05D001087 ORTHO05D005406 2.3e-16 88.6 69 52.2
Ah.02g128690 Amaranthus hybridus HOM05D001087 ORTHO05D005406 3.0e-16 88.2 71 54.9
Cc07_g01490 Coffea canephora HOM05D001087 ORTHO05D005406 3.0e-16 88.2 69 55.1
HanXRQChr17g0550851 Helianthus annuus HOM05D001087 ORTHO05D005406 8.7e-16 86.7 69 56.5
Solyc02g094600.2 Solanum lycopersicum HOM05D001087 ORTHO05D005406 2.5e-15 85.1 71 52.1
SEGI_28776 Sequoiadendron giganteum HOM05D001087 ORTHO05D005406 3.3e-15 84.7 71 53.5
COL.COLO4_13413 Corchorus olitorius HOM05D001087 ORTHO05D005406 1.3e-14 82.8 67 49.3
THA.LOC104805290 Tarenaya hassleriana HOM05D001087 ORTHO05D005406 1.3e-14 82.8 74 56.8
PGR042G1457 Punica granatum HOM05D001087 ORTHO05D005406 2.2e-14 82.0 74 55.4
AT1G12930 Arabidopsis thaliana HOM05D001087 ORTHO05D005406 2.8e-14 81.6 75 56.0
Migut.F00007 Erythranthe guttata HOM05D001087 ORTHO05D005406 3.7e-14 81.3 73 47.9
Eucgr.G01904 Eucalyptus grandis HOM05D001087 ORTHO05D005406 3.7e-14 81.3 71 53.5
Carub.0001s1270 Capsella rubella HOM05D001087 ORTHO05D005406 1.1e-13 79.7 76 53.9
AL1G24570 Arabidopsis lyrata HOM05D001087 ORTHO05D005406 1.4e-13 79.3 78 55.1
MSTRG.3036 Avicennia marina HOM05D001087 ORTHO05D005406 1.4e-13 79.3 69 52.2
Thhalv10006676m.g Eutrema salsugineum HOM05D001087 ORTHO05D005406 1.4e-13 79.3 74 54.1
Sp1g11500 Schrenkiella parvula HOM05D001087 ORTHO05D005406 1.4e-13 79.3 73 56.2
A09p63520 Brassica napus HOM05D001087 ORTHO05D005406 3.1e-13 78.2 74 54.1
BraA09t41703Z Brassica rapa HOM05D001087 ORTHO05D005406 3.1e-13 78.2 74 54.1
Mapoly0055s0098 Marchantia polymorpha HOM05D001087 ORTHO05D005406 3.1e-13 78.2 70 54.3
Aa31LG1G1850 Aethionema arabicum HOM05D001087 ORTHO05D005406 9.1e-13 76.6 76 52.6
C08p47020 Brassica napus HOM05D001087 ORTHO05D005406 2.6e-12 75.1 75 50.7
Lsat_1_v5_gn_3_103380 Lactuca sativa HOM05D001087 ORTHO05D005406 2.6e-12 75.1 64 56.2
Pp3c10_7760 Physcomitrium patens HOM05D001087 ORTHO05D005406 7.7e-12 73.6 81 46.9
SalBow4G1044 Salvia bowleyana HOM05D001087 ORTHO05D005406 1.0e-11 73.2 69 47.8
HPP92_021716 Vanilla planifolia HOM05D001087 ORTHO05D005406 3.8e-11 71.2 51 62.7
Pp3c14_8290 Physcomitrium patens HOM05D001087 ORTHO05D005406 6.5e-11 70.5 81 43.2
Pp3c14_8293 Physcomitrium patens HOM05D001087 ORTHO05D005406 6.5e-11 70.5 81 43.2
SGA_v2.0_scaffold44G16961 Striga asiatica HOM05D001087 ORTHO05D005406 4.6e-09 64.3 55 54.5
BolC8t52241H Brassica oleracea HOM05D001087 ORTHO05D005406 1.8e-08 62.4 71 47.9
CDE05G0125 Ceratophyllum demersum HOM05D001087 ORTHO05D005406 3.3e-07 58.2 68 41.2
BcaB08g34240 Brassica carinata HOM05D001087 ORTHO05D005406 1.3e-06 56.2 62 48.4
AUR62017451 Chenopodium quinoa HOM05D001087 ORTHO05D005406 1.7e-06 55.8 51 51.0
Nitab4.5_0002901g0060 Nicotiana tabacum HOM05D001087 ORTHO05D005406 1.7e-06 55.8 49 49.0


User provided reference genes

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