Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0539600 Oryza sativa ssp. japonica HOM05D015059 ORTHO05D000368 6.8e-243 843.6 429 100.0
Os11g0539700 Oryza sativa ssp. japonica HOM05D015059 ORTHO05D000368 1.6e-66 257.7 290 53.4
Zm00001eb067000 Zea mays HOM05D015059 ORTHO05D000368 1.5e-64 251.1 442 38.5
Zm00001eb066980 Zea mays HOM05D015059 ORTHO05D000368 7.4e-64 248.8 442 38.2
Zm00001eb066990 Zea mays HOM05D015059 ORTHO05D000368 7.4e-64 248.8 443 38.6
Zm00001eb067010 Zea mays HOM05D015059 ORTHO05D000368 9.7e-64 248.4 442 38.0
Os03g0722800 Oryza sativa ssp. japonica HOM05D015059 ORTHO05D000368 2.8e-63 246.9 440 38.2
Os01g0553400 Oryza sativa ssp. japonica HOM05D000576 ORTHO05D000368 8.0e-42 175.6 400 35.0
Os06g0713400 Oryza sativa ssp. japonica HOM05D000576 ORTHO05D000368 5.4e-38 162.9 410 32.2
Os11g0533800 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D000368 6.1e-34 149.4 393 32.6
Os07g0163200 Oryza sativa ssp. japonica HOM05D000576 ORTHO05D000368 3.4e-32 143.7 407 33.4
Os11g0532600 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D000368 1.7e-31 141.4 393 31.3
Os12g0127400 Oryza sativa ssp. japonica HOM05D000576 ORTHO05D000368 3.7e-31 140.2 282 34.4
Os06g0161300 Oryza sativa ssp. japonica HOM05D000576 ORTHO05D000368 1.7e-28 131.3 435 26.4
Os07g0158900 Oryza sativa ssp. japonica HOM05D000576 ORTHO05D000368 2.8e-26 124.0 396 28.3
Os07g0161500 Oryza sativa ssp. japonica HOM05D000576 ORTHO05D000368 6.8e-25 119.4 414 28.0
CSS0016406 Camellia sinensis var. sinensis HOM05D000576 ORTHO05D000368 1.1e-22 112.1 418 26.6
Os03g0712600 Oryza sativa ssp. japonica HOM05D015059 ORTHO05D000368 1.8e-22 111.3 173 41.0
Os06g0204600 Oryza sativa ssp. japonica HOM05D000576 ORTHO05D000368 5.4e-22 109.8 262 29.4
CSS0001211 Camellia sinensis var. sinensis HOM05D000576 ORTHO05D000368 4.6e-21 106.7 418 26.3
TAR633G2603 Trochodendron aralioides HOM05D000576 ORTHO05D000368 4.6e-21 106.7 422 27.7
Os06g0716467 Oryza sativa ssp. japonica HOM05D015059 ORTHO05D000368 1.7e-20 104.8 317 30.9
TAR636G0024 Trochodendron aralioides HOM05D000576 ORTHO05D000368 6.6e-20 102.8 395 26.1
GSVIVG01017697001 Vitis vinifera HOM05D000576 ORTHO05D000368 1.1e-19 102.1 437 24.3
Os04g0675800 Oryza sativa ssp. japonica HOM05D001982 ORTHO05D008035 2.5e-19 100.9 355 27.6
Os05g0571700 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 8.0e-18 95.9 432 26.9
RcHm_v2.0_Chr2g0168251 Rosa chinensis HOM05D000576 ORTHO05D000368 8.0e-18 95.9 406 26.6
Os09g0502600 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 1.0e-17 95.5 391 26.1
TAR633G2125 Trochodendron aralioides HOM05D000576 ORTHO05D000368 1.4e-17 95.1 358 29.9
Os04g0479800 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 4.0e-17 93.6 402 26.1
Os07g0160500 Oryza sativa ssp. japonica HOM05D000576 ORTHO05D000368 4.0e-17 93.6 272 30.1
TAR636G3326 Trochodendron aralioides HOM05D000576 ORTHO05D000368 5.2e-17 93.2 404 26.2
Os09g0502900 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 1.2e-16 92.0 397 25.2
Os06g0139000 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 1.5e-16 91.7 398 26.1
Os01g0946850 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 2.0e-16 91.3 398 26.1
TAR365G0708 Trochodendron aralioides HOM05D000576 ORTHO05D000368 4.4e-16 90.1 340 24.1
TAR633G1895 Trochodendron aralioides HOM05D000576 ORTHO05D000368 5.8e-16 89.7 354 28.2
TAR371G0526 Trochodendron aralioides HOM05D000576 ORTHO05D000368 9.8e-16 89.0 415 26.0
TAR629G0101 Trochodendron aralioides HOM05D000576 ORTHO05D000368 1.3e-15 88.6 408 24.8
Os06g0138700 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 2.2e-15 87.8 385 26.2
Os06g0142100 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 2.2e-15 87.8 398 25.6
RcHm_v2.0_Chr2g0167551 Rosa chinensis HOM05D000576 ORTHO05D000368 2.2e-15 87.8 407 23.6
Zm00001eb276920 Zea mays HOM05D008868 ORTHO05D011164 3.7e-15 87.0 398 26.4
QL11p001174 Quercus lobata HOM05D000576 ORTHO05D000368 4.9e-15 86.7 369 26.3
Actinidia31191 Actinidia chinensis HOM05D000576 ORTHO05D000368 6.4e-15 86.3 404 24.8
arahy.Tifrunner.gnm1.ann1.7MIU5M Arachis hypogaea HOM05D000576 ORTHO05D000368 6.4e-15 86.3 431 24.4
Dinv11451 Davidia involucrata HOM05D000576 ORTHO05D000368 8.3e-15 85.9 409 26.2
Aqoxy5G04063 Aquilegia oxysepala HOM05D000576 ORTHO05D000368 2.4e-14 84.3 425 24.2
Hund02870 Selenicereus undatus HOM05D000576 ORTHO05D000368 2.4e-14 84.3 419 24.3
Aqoxy6G01742 Aquilegia oxysepala HOM05D000576 ORTHO05D000368 4.1e-14 83.6 229 32.8
Aqoxy6G01747 Aquilegia oxysepala HOM05D000576 ORTHO05D000368 4.1e-14 83.6 229 32.8
Psat4g131160 Pisum sativum HOM05D000576 ORTHO05D000368 5.4e-14 83.2 419 24.1
Os11g0130500 Oryza sativa ssp. japonica HOM05D000576 ORTHO05D000368 9.2e-14 82.4 161 34.8
arahy.Tifrunner.gnm1.ann1.X3R901 Arachis hypogaea HOM05D000576 ORTHO05D000368 1.6e-13 81.6 434 25.1
COL.COLO4_23025 Corchorus olitorius HOM05D000576 ORTHO05D000368 4.6e-13 80.1 361 25.8
CSS0005465 Camellia sinensis var. sinensis HOM05D000576 ORTHO05D000368 7.8e-13 79.3 421 24.5
Migut.C01300 Erythranthe guttata HOM05D000576 ORTHO05D000368 1.3e-12 78.6 417 25.4
Migut.J00163 Erythranthe guttata HOM05D000576 ORTHO05D000368 1.3e-12 78.6 404 23.8
Medtr8g468470 Medicago truncatula HOM05D000576 ORTHO05D000368 3.9e-12 77.0 426 24.2
COL.COLO4_23029 Corchorus olitorius HOM05D000576 ORTHO05D000368 5.0e-12 76.6 370 26.8
FAN06G5009 Fragaria x ananassa HOM05D000576 ORTHO05D000368 5.0e-12 76.6 407 25.1
EL10Ac1g02073 Beta vulgaris HOM05D000576 ORTHO05D000368 8.6e-12 75.9 402 25.4
Zm00001eb143720 Zea mays HOM05D008868 ORTHO05D011164 1.1e-11 75.5 393 25.4
HanXRQChr09g0252251 Helianthus annuus HOM05D000576 ORTHO05D000368 1.9e-11 74.7 425 22.6
QL10p004694 Quercus lobata HOM05D000576 ORTHO05D000368 1.9e-11 74.7 358 25.1
Migut.J00168 Erythranthe guttata HOM05D000576 ORTHO05D000368 2.5e-11 74.3 406 23.9
Manes.03G198700 Manihot esculenta HOM05D000576 ORTHO05D000368 7.3e-11 72.8 407 24.3
Peaxi162Scf00066g01414 Petunia axillaris HOM05D000576 ORTHO05D000368 7.3e-11 72.8 399 22.8
COL.COLO4_14986 Corchorus olitorius HOM05D000576 ORTHO05D000368 9.5e-11 72.4 366 25.4
Os09g0503700 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 1.2e-10 72.0 178 31.5
FvH4_7g27481 Fragaria vesca HOM05D008847 ORTHO05D000368 1.6e-10 71.6 404 23.8
RcHm_v2.0_Chr2g0167641 Rosa chinensis HOM05D000576 ORTHO05D000368 2.1e-10 71.2 414 26.6
Duzib248G0036 Durio zibethinus HOM05D000576 ORTHO05D000368 2.8e-10 70.9 487 23.0
Peaxi162Scf00045g01340 Petunia axillaris HOM05D000576 ORTHO05D000368 2.8e-10 70.9 382 25.9
Os02g0105800 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 3.6e-10 70.5 403 24.8
TWI31G0199 Tripterygium wilfordii HOM05D000576 ORTHO05D000368 4.7e-10 70.1 412 22.8
Migut.C01299 Erythranthe guttata HOM05D000576 ORTHO05D000368 1.1e-09 68.9 296 23.0
Gohir.D08G134100 Gossypium hirsutum HOM05D000576 ORTHO05D000368 1.1e-09 68.9 396 22.7
MD15G1437600 Malus domestica HOM05D000576 ORTHO05D000368 1.1e-09 68.9 387 22.7
Gorai.004G137200 Gossypium raimondii HOM05D000576 ORTHO05D000368 1.4e-09 68.6 396 22.7
Lj2A749T20 Lonicera japonica HOM05D000576 ORTHO05D000368 1.8e-09 68.2 371 28.0
Ciclev10008279m.g Citrus clementina HOM05D000576 ORTHO05D000368 2.3e-09 67.8 398 21.6
QL10p005853 Quercus lobata HOM05D000576 ORTHO05D000368 2.3e-09 67.8 423 22.7
FAN09G4808 Fragaria x ananassa HOM05D008847 ORTHO05D000368 3.1e-09 67.4 261 26.1
Lj2A751T36 Lonicera japonica HOM05D000576 ORTHO05D000368 3.1e-09 67.4 368 28.0
FAN06G1177 Fragaria x ananassa HOM05D000576 ORTHO05D000368 4.0e-09 67.0 421 24.0
Migut.O00771 Erythranthe guttata HOM05D000576 ORTHO05D000368 5.2e-09 66.6 362 22.9
RcHm_v2.0_Chr3g0449571 Rosa chinensis HOM05D000576 ORTHO05D000368 5.2e-09 66.6 369 21.7
QL10p004689 Quercus lobata HOM05D000576 ORTHO05D000368 6.8e-09 66.2 350 23.7
Lj4A675G49 Lonicera japonica HOM05D000576 ORTHO05D000368 8.9e-09 65.9 358 27.7
TPR.G6938 Trifolium pratense HOM05D009500 ORTHO05D000368 8.9e-09 65.9 372 21.2
Os02g0729350 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 1.2e-08 65.5 186 32.3
TWI63G1205 Tripterygium wilfordii HOM05D000576 ORTHO05D000368 1.2e-08 65.5 426 23.7
FAN19G3107 Fragaria x ananassa HOM05D000555 ORTHO05D000646 1.5e-08 65.1 404 24.8
RcHm_v2.0_Chr7g0184481 Rosa chinensis HOM05D000576 ORTHO05D000368 1.5e-08 65.1 407 22.9
FvH4_1g15880 Fragaria vesca HOM05D000576 ORTHO05D000368 3.4e-08 63.9 410 23.7
TPR.G4771 Trifolium pratense HOM05D009500 ORTHO05D000368 3.4e-08 63.9 413 20.6
RcHm_v2.0_Chr7g0184471 Rosa chinensis HOM05D000576 ORTHO05D000368 4.4e-08 63.5 386 23.6
SGA_v2.0_scaffold16G07850 Striga asiatica HOM05D000312 ORTHO05D000221 4.4e-08 63.5 408 22.5
EL10Ac9g20900 Beta vulgaris HOM05D000576 ORTHO05D000368 7.5e-08 62.8 399 23.3
RcHm_v2.0_Chr7g0197551 Rosa chinensis HOM05D000576 ORTHO05D000368 7.5e-08 62.8 405 23.5
TPR.G7001 Trifolium pratense HOM05D009500 ORTHO05D000368 9.8e-08 62.4 371 23.2
Medtr1g016340 Medicago truncatula HOM05D000312 ORTHO05D000221 1.3e-07 62.0 426 22.5
TWI73G0365 Tripterygium wilfordii HOM05D000576 ORTHO05D000368 1.3e-07 62.0 449 21.4
TPR.G33251 Trifolium pratense HOM05D000576 ORTHO05D000368 1.7e-07 61.6 426 23.0
RcHm_v2.0_Chr2g0167601 Rosa chinensis HOM05D000576 ORTHO05D000368 2.2e-07 61.2 362 22.4
Actinidia23749 Actinidia chinensis HOM05D000576 ORTHO05D000368 2.9e-07 60.8 397 23.2
MD00G1039500 Malus domestica HOM05D000312 ORTHO05D000221 2.9e-07 60.8 428 20.8
Actinidia07081 Actinidia chinensis HOM05D000576 ORTHO05D000368 6.4e-07 59.7 458 22.7
Hma1.2p1_0024F.1_g015920 Hydrangea macrophylla HOM05D000576 ORTHO05D000368 1.1e-06 58.9 440 22.3
Lj4C677G6 Lonicera japonica HOM05D000576 ORTHO05D000368 1.1e-06 58.9 141 33.3
Manes.11G129716 Manihot esculenta HOM05D000576 ORTHO05D000368 1.1e-06 58.9 384 22.7
Medtr6g013240 Medicago truncatula HOM05D008175 ORTHO05D010403 1.1e-06 58.9 235 24.7
Medtr6g013380 Medicago truncatula HOM05D008175 ORTHO05D010403 1.1e-06 58.9 235 24.7
Thecc.03G058200 Theobroma cacao HOM05D000576 ORTHO05D000368 1.1e-06 58.9 271 25.5
Phvul.003G068100 Phaseolus vulgaris HOM05D000576 ORTHO05D000368 1.4e-06 58.5 340 26.2
QL08p012268 Quercus lobata HOM05D000051 ORTHO05D000015 1.4e-06 58.5 414 23.9
TAR371G1249 Trochodendron aralioides HOM05D000576 ORTHO05D000368 1.4e-06 58.5 140 27.9
TAR629G0007 Trochodendron aralioides HOM05D000312 ORTHO05D000221 1.4e-06 58.5 398 23.6
TAR629G0763 Trochodendron aralioides HOM05D000312 ORTHO05D000221 1.4e-06 58.5 398 23.6
MBI16_g01187_MAGBIO Magnolia biondii HOM05D000576 ORTHO05D000368 1.9e-06 58.2 218 27.1
Nn5g28221 Nelumbo nucifera HOM05D000051 ORTHO05D000015 2.4e-06 57.8 228 25.4
GSVIVG01010160001 Vitis vinifera HOM05D000312 ORTHO05D000221 2.4e-06 57.8 332 23.8
Medtr2g091145 Medicago truncatula HOM05D000312 ORTHO05D000221 4.1e-06 57.0 404 21.0
Peaxi162Scf00853g00215 Petunia axillaris HOM05D000051 ORTHO05D011342 4.1e-06 57.0 409 23.0
SGA_v2.0_scaffold24G10555 Striga asiatica HOM05D000576 ORTHO05D000368 4.1e-06 57.0 301 24.3
vmacro02127 Vaccinium macrocarpon HOM05D000003 ORTHO05D000004 4.1e-06 57.0 370 23.2
Psat3g003680 Pisum sativum HOM05D009500 ORTHO05D000368 5.4e-06 56.6 247 23.1
Lj7A319T20 Lonicera japonica HOM05D000576 ORTHO05D000368 7.1e-06 56.2 365 24.9
Medtr3g009910 Medicago truncatula HOM05D008175 ORTHO05D010403 7.1e-06 56.2 326 24.2
CAN.G337.7 Capsicum annuum HOM05D009846 ORTHO05D000368 9.2e-06 55.8 307 25.1
CAN.G337.8 Capsicum annuum HOM05D009846 ORTHO05D000368 9.2e-06 55.8 307 25.1
Os04g0479500 Oryza sativa ssp. japonica HOM05D008868 ORTHO05D011164 9.2e-06 55.8 157 27.4
Os08g0344700 Oryza sativa ssp. japonica HOM05D044344 ORTHO05D000368 9.2e-06 55.8 114 25.4


User provided reference genes

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