Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0537300 Oryza sativa ssp. japonica HOM05D007261 ORTHO05D009163 6.6e-143 510.8 269 100.0
Zm00001eb197910 Zea mays HOM05D007261 ORTHO05D009163 2.3e-116 422.5 267 82.8
MELO3C026753.2 Cucumis melo HOM05D007261 ORTHO05D009163 2.7e-80 302.8 250 64.8
Sed0025955 Sechium edule HOM05D007261 ORTHO05D009163 2.3e-79 299.7 244 66.4
CsaV3_3G043490 Cucumis sativus L. HOM05D007261 ORTHO05D009163 6.7e-79 298.1 250 63.2
PGR119G1620 Punica granatum HOM05D007261 ORTHO05D009163 1.1e-78 297.4 259 60.2
Nn4g22065 Nelumbo nucifera HOM05D007261 ORTHO05D009163 4.3e-78 295.4 259 62.2
ClCG10G013090 Citrullus lanatus HOM05D007261 ORTHO05D009163 9.6e-78 294.3 250 64.0
Potri.001G070800 Populus trichocarpa HOM05D007261 ORTHO05D009163 9.6e-78 294.3 253 60.1
FAN07G0598 Fragaria x ananassa HOM05D007261 ORTHO05D009163 4.8e-77 292.0 244 63.1
RcHm_v2.0_Chr4g0428371 Rosa chinensis HOM05D007261 ORTHO05D009163 1.8e-76 290.0 231 64.5
TWI18G1332 Tripterygium wilfordii HOM05D007261 ORTHO05D009163 1.8e-76 290.0 254 60.6
FvH4_4g22120 Fragaria vesca HOM05D007261 ORTHO05D009163 2.4e-76 289.7 231 64.5
Dinv04437 Davidia involucrata HOM05D007261 ORTHO05D009163 4.1e-76 288.9 238 62.6
Rhsim12G0015700 Rhododendron simsii HOM05D007261 ORTHO05D009163 1.2e-75 287.3 224 66.1
FAN12G3746 Fragaria x ananassa HOM05D007261 ORTHO05D009163 1.5e-75 287.0 245 62.0
Sabra01G0049700 Salix brachista HOM05D007261 ORTHO05D009163 2.6e-75 286.2 248 60.1
AUR62003485 Chenopodium quinoa HOM05D007261 ORTHO05D009163 3.4e-75 285.8 261 57.5
QL03p048277 Quercus lobata HOM05D007261 ORTHO05D009163 3.4e-75 285.8 233 64.4
vmacro01006 Vaccinium macrocarpon HOM05D007261 ORTHO05D009163 3.4e-75 285.8 218 65.6
Eucgr.J01661 Eucalyptus grandis HOM05D007261 ORTHO05D009163 5.9e-75 285.0 272 56.6
FAN17G2458 Fragaria x ananassa HOM05D007261 ORTHO05D009163 5.9e-75 285.0 251 59.8
EL10Ac6g15388 Beta vulgaris HOM05D007261 ORTHO05D009163 1.0e-74 284.3 260 56.2
AUR62017794 Chenopodium quinoa HOM05D007261 ORTHO05D009163 1.0e-74 284.3 259 55.6
Cc11_g14850 Coffea canephora HOM05D007261 ORTHO05D009163 1.3e-74 283.9 251 59.8
Prupe.1G211100 Prunus persica HOM05D007261 ORTHO05D009163 1.7e-74 283.5 237 62.4
GSVIVG01001121001 Vitis vinifera HOM05D007261 ORTHO05D009163 2.9e-74 282.7 249 60.6
MD16G1145000 Malus domestica HOM05D007261 ORTHO05D009163 6.5e-74 281.6 247 59.1
HPP92_020118 Vanilla planifolia HOM05D007261 ORTHO05D009163 6.5e-74 281.6 240 60.8
PSO017G6922 Papaver somniferum HOM05D007261 ORTHO05D009163 1.1e-73 280.8 219 64.8
Hma1.2p1_0738F.1_g210990 Hydrangea macrophylla HOM05D007261 ORTHO05D009163 1.4e-73 280.4 222 64.4
Hund12712 Selenicereus undatus HOM05D007261 ORTHO05D009163 1.4e-73 280.4 259 57.5
Thecc.01G239300 Theobroma cacao HOM05D007261 ORTHO05D009163 1.9e-73 280.0 241 60.2
Atru.chr12.1480 Acer truncatum HOM05D007261 ORTHO05D009163 2.5e-73 279.6 226 61.9
Ciclev10029098m.g Citrus clementina HOM05D007261 ORTHO05D009163 2.5e-73 279.6 243 59.3
Ah.03g147240 Amaranthus hybridus HOM05D007261 ORTHO05D009163 3.2e-73 279.3 259 57.5
Lsat_1_v5_gn_3_33201 Lactuca sativa HOM05D007261 ORTHO05D009163 3.2e-73 279.3 243 62.1
TWI36G0866 Tripterygium wilfordii HOM05D007261 ORTHO05D009163 3.2e-73 279.3 234 62.8
Duzib264G0686 Durio zibethinus HOM05D007261 ORTHO05D009163 4.2e-73 278.9 259 56.8
Gorai.007G068700 Gossypium raimondii HOM05D007261 ORTHO05D009163 9.3e-73 277.7 223 62.3
Manes.09G172600 Manihot esculenta HOM05D007261 ORTHO05D009163 9.3e-73 277.7 258 55.4
PSO478G2703 Papaver somniferum HOM05D007261 ORTHO05D009163 9.3e-73 277.7 219 64.4
Gohir.D11G063500 Gossypium hirsutum HOM05D007261 ORTHO05D009163 1.6e-72 276.9 220 63.2
Cfa009475 Carpinus fangiana HOM05D007261 ORTHO05D009163 2.1e-72 276.6 272 58.1
Gohir.A11G059400 Gossypium hirsutum HOM05D007261 ORTHO05D009163 2.1e-72 276.6 218 63.3
MD13G1134400 Malus domestica HOM05D007261 ORTHO05D009163 2.7e-72 276.2 247 57.5
Cpa.g.sc38.54 Carica papaya HOM05D007261 ORTHO05D009163 4.6e-72 275.4 253 56.1
HanXRQChr06g0175371 Helianthus annuus HOM05D007261 ORTHO05D009163 6.1e-72 275.0 239 62.3
Lj3A1078G18 Lonicera japonica HOM05D007261 ORTHO05D009163 6.1e-72 275.0 201 66.7
TAR629G2200 Trochodendron aralioides HOM05D007261 ORTHO05D009163 6.1e-72 275.0 244 58.6
Solyc11g040130.2 Solanum lycopersicum HOM05D007261 ORTHO05D009163 1.0e-71 274.2 238 58.8
Sopen11g017340 Solanum pennellii HOM05D007261 ORTHO05D009163 1.3e-71 273.9 230 60.9
Aqoxy5G04229 Aquilegia oxysepala HOM05D007261 ORTHO05D009163 1.8e-71 273.5 232 60.3
arahy.Tifrunner.gnm1.ann1.EWZS38 Arachis hypogaea HOM05D007261 ORTHO05D009163 2.3e-71 273.1 228 60.5
arahy.Tifrunner.gnm1.ann1.X3R9N8 Arachis hypogaea HOM05D007261 ORTHO05D009163 2.3e-71 273.1 228 60.5
ECA246G1741 Erigeron canadensis HOM05D007261 ORTHO05D009163 3.0e-71 272.7 242 58.3
Peaxi162Scf01167g00120 Petunia axillaris HOM05D007261 ORTHO05D009163 3.9e-71 272.3 230 61.3
PGSC0003DMG400002189 Solanum tuberosum HOM05D007261 ORTHO05D009163 8.7e-71 271.2 253 56.5
Aa31LG7G10040 Aethionema arabicum HOM05D007261 ORTHO05D009163 1.1e-70 270.8 263 55.5
ATR0582G128 Amborella trichopoda HOM05D007261 ORTHO05D009163 1.1e-70 270.8 254 55.5
CSS0041929 Camellia sinensis var. sinensis HOM05D007261 ORTHO05D009163 1.1e-70 270.8 250 60.0
Nitab4.5_0005286g0010 Nicotiana tabacum HOM05D007261 ORTHO05D009163 1.1e-70 270.8 257 55.6
AT1G44960 Arabidopsis thaliana HOM05D007261 ORTHO05D009163 1.9e-70 270.0 254 57.1
CSS0010700 Camellia sinensis var. sinensis HOM05D007261 ORTHO05D009163 1.9e-70 270.0 250 60.0
SalBow2G2703 Salvia bowleyana HOM05D007261 ORTHO05D009163 2.5e-70 269.6 248 58.1
CAN.G624.13 Capsicum annuum HOM05D007261 ORTHO05D009163 4.3e-70 268.9 246 56.9
Carub.0001s3543 Capsella rubella HOM05D007261 ORTHO05D009163 5.7e-70 268.5 254 57.1
CARHR036160 Cardamine hirsuta HOM05D007261 ORTHO05D009163 7.4e-70 268.1 254 55.1
CANSAT01G0240 Cannabis sativa HOM05D007261 ORTHO05D009163 9.7e-70 267.7 238 58.4
Phvul.008G004000 Phaseolus vulgaris HOM05D007261 ORTHO05D009163 1.3e-69 267.3 223 62.8
AL1G52610 Arabidopsis lyrata HOM05D007261 ORTHO05D009163 6.3e-69 265.0 261 55.2
Thhalv10011722m.g Eutrema salsugineum HOM05D007261 ORTHO05D009163 8.2e-69 264.6 253 55.3
Oeu021934.1 Olea europaea HOM05D007261 ORTHO05D009163 1.8e-68 263.5 249 58.2
TPR.G9720 Trifolium pratense HOM05D007261 ORTHO05D009163 1.8e-68 263.5 220 61.8
Lj1g0023925 Lotus japonicus HOM05D007261 ORTHO05D009163 4.1e-68 262.3 223 61.9
Ca_04086_v3 Cicer arietinum L. HOM05D007261 ORTHO05D009163 6.9e-68 261.5 207 63.8
BraA10t42964Z Brassica rapa HOM05D007261 ORTHO05D009163 9.1e-68 261.2 260 54.2
Psat3g206640 Pisum sativum HOM05D007261 ORTHO05D009163 9.1e-68 261.2 227 61.2
Migut.K01136 Erythranthe guttata HOM05D007261 ORTHO05D009163 1.5e-67 260.4 239 59.4
BcaB07g33898 Brassica carinata HOM05D007261 ORTHO05D009163 2.6e-67 259.6 253 54.5
CDE05G0176 Ceratophyllum demersum HOM05D007261 ORTHO05D009163 2.6e-67 259.6 210 60.0
Glyma.18G298600 Glycine max HOM05D007261 ORTHO05D009163 2.6e-67 259.6 231 59.7
A10p07140 Brassica napus HOM05D007261 ORTHO05D009163 3.4e-67 259.2 260 53.8
Sp1g33800 Schrenkiella parvula HOM05D007261 ORTHO05D009163 4.5e-67 258.8 218 60.1
Medtr7g006790 Medicago truncatula HOM05D007261 ORTHO05D009163 7.7e-67 258.1 234 59.8
Medtr7g006800 Medicago truncatula HOM05D007261 ORTHO05D009163 7.7e-67 258.1 234 59.8
Glyma.08G363400 Glycine max HOM05D007261 ORTHO05D009163 1.0e-66 257.7 231 59.7
THA.LOC104801410 Tarenaya hassleriana HOM05D007261 ORTHO05D009163 1.0e-66 257.7 243 56.0
unitig_26.g10437 Utricularia gibba HOM05D000361 ORTHO05D007482 1.7e-66 256.9 227 58.6
BolC6t35245H Brassica oleracea HOM05D007261 ORTHO05D009163 2.2e-66 256.5 248 54.8
C06p01120 Brassica napus HOM05D007261 ORTHO05D009163 2.9e-66 256.1 248 54.8
Lalb_Chr04g0257321 Lupinus albus HOM05D007261 ORTHO05D009163 1.9e-65 253.4 229 56.3
Sc17g0001500 Simmondsia chinensis HOM05D007261 ORTHO05D009163 2.7e-64 249.6 196 64.8
VMungo1383G1401 Vigna mungo HOM05D007261 ORTHO05D009163 3.0e-63 246.1 207 63.3
AagrBONN_evm.TU.Sc2ySwM_228.5286 Anthoceros agrestis HOM05D007261 ORTHO05D009163 9.1e-60 234.6 236 55.1
Pp3c19_21680 Physcomitrium patens HOM05D007261 ORTHO05D009163 1.3e-58 230.7 210 56.2
SMO351G0136 Selaginella moellendorffii HOM05D007261 ORTHO05D009163 6.5e-58 228.4 202 58.4
Haze_12532 Corylus avellana HOM05D007261 ORTHO05D009163 1.2e-56 224.2 384 39.1
SEGI_21849 Sequoiadendron giganteum HOM05D007261 ORTHO05D009163 1.4e-55 220.7 192 60.9
Mapoly0073s0041 Marchantia polymorpha HOM05D007261 ORTHO05D009163 1.2e-51 207.6 242 47.9
CiPaw.05G097700 Carya illinoinensis HOM05D007261 ORTHO05D009163 4.5e-51 205.7 262 46.9
HPP92_020128 Vanilla planifolia HOM05D007261 ORTHO05D009163 4.7e-48 195.7 201 53.7
CBR_g44525 Chara braunii HOM05D007261 ORTHO05D009163 2.0e-43 180.3 236 44.1
Nitab4.5_0002113g0010 Nicotiana tabacum HOM05D000361 ORTHO05D007482 2.2e-42 176.8 161 56.5
BcaC08g42890 Brassica carinata HOM05D007261 ORTHO05D009163 9.5e-33 144.8 133 57.1
Potri.003G159901 Populus trichocarpa HOM05D007261 ORTHO05D009163 5.2e-31 139.0 97 66.0
Actinidia30573 Actinidia chinensis HOM05D007261 ORTHO05D009163 3.1e-28 129.8 101 60.4
PRCOL_00004129 Prasinoderma coloniale HOM05D007261 ORTHO05D009163 1.9e-25 120.6 225 38.2
CDE05G1764 Ceratophyllum demersum HOM05D007261 ORTHO05D009163 1.3e-21 107.8 117 50.4
Hma1.2p1_0738F.1_g211000 Hydrangea macrophylla HOM05D007261 ORTHO05D009163 1.5e-17 94.4 102 52.9
Lalb_Chr13g0304101 Lupinus albus HOM05D001530 ORTHO05D003676 1.1e-09 68.2 176 30.7
PRCOL_00001953 Prasinoderma coloniale HOM05D005243 ORTHO05D006670 1.5e-09 67.8 140 35.7
Gohir.D02G037800 Gossypium hirsutum HOM05D001530 ORTHO05D003676 6.2e-08 62.4 176 29.5
Gorai.005G041700 Gossypium raimondii HOM05D001530 ORTHO05D003676 6.2e-08 62.4 176 29.5
CANSAT25G1297 Cannabis sativa HOM05D001530 ORTHO05D003676 1.1e-07 61.6 216 27.8
Gohir.A02G030900 Gossypium hirsutum HOM05D001530 ORTHO05D003676 1.1e-07 61.6 176 29.0
TAR365G1025 Trochodendron aralioides HOM05D001530 ORTHO05D003676 1.1e-07 61.6 214 28.0
THA.LOC104801224 Tarenaya hassleriana HOM05D001530 ORTHO05D003676 1.4e-07 61.2 199 27.1
Cfa006116 Carpinus fangiana HOM05D001530 ORTHO05D003676 1.8e-07 60.8 200 29.0
FAN27G3491 Fragaria x ananassa HOM05D001530 ORTHO05D003676 1.8e-07 60.8 200 29.5
Potri.010G030800 Populus trichocarpa HOM05D001530 ORTHO05D003676 1.8e-07 60.8 176 30.1
AagrBONN_evm.TU.Sc2ySwM_344.3332 Anthoceros agrestis HOM05D001530 ORTHO05D003676 2.3e-07 60.5 175 28.6
DCAR_024580 Daucus carota HOM05D001530 ORTHO05D003676 2.3e-07 60.5 136 33.8
RcHm_v2.0_Chr6g0291411 Rosa chinensis HOM05D001530 ORTHO05D003676 2.3e-07 60.5 200 29.0
FvH4_2g23830 Fragaria vesca HOM05D001530 ORTHO05D003676 3.1e-07 60.1 200 29.0
FAN20G0938 Fragaria x ananassa HOM05D001530 ORTHO05D003676 3.1e-07 60.1 200 29.0
FAN24G2525 Fragaria x ananassa HOM05D001530 ORTHO05D003676 3.1e-07 60.1 200 29.0
HanXRQChr01g0002331 Helianthus annuus HOM05D001530 ORTHO05D003676 4.0e-07 59.7 203 27.1
MD03G1267800 Malus domestica HOM05D001530 ORTHO05D003676 4.0e-07 59.7 200 28.5
Oeu029305.2 Olea europaea HOM05D001530 ORTHO05D003676 4.0e-07 59.7 200 28.5
GSVIVG01017888001 Vitis vinifera HOM05D001530 ORTHO05D003676 4.0e-07 59.7 200 28.0
Os07g0655900 Oryza sativa ssp. japonica HOM05D001530 ORTHO05D003676 5.2e-07 59.3 179 29.1
CSS0047387 Camellia sinensis var. sinensis HOM05D001530 ORTHO05D003676 6.8e-07 58.9 200 28.0
Aqoxy2G03267 Aquilegia oxysepala HOM05D001530 ORTHO05D003676 8.9e-07 58.5 176 29.0
MELO3C021403.2 Cucumis melo HOM05D001530 ORTHO05D003676 1.2e-06 58.2 186 28.5
CsaV3_6G018580 Cucumis sativus L. HOM05D001530 ORTHO05D003676 1.2e-06 58.2 186 28.5
Dinv32953 Davidia involucrata HOM05D001530 ORTHO05D003676 1.2e-06 58.2 203 27.1
Nn1g02164 Nelumbo nucifera HOM05D001530 ORTHO05D003676 1.2e-06 58.2 186 27.4
CDE11G0741 Ceratophyllum demersum HOM05D001530 ORTHO05D003676 1.5e-06 57.8 187 29.9
MBI17_g34456_MAGBIO Magnolia biondii HOM05D001530 ORTHO05D003676 1.5e-06 57.8 176 28.4
Sc17g0004010 Simmondsia chinensis HOM05D001530 ORTHO05D003676 1.5e-06 57.8 189 26.5
Actinidia23476 Actinidia chinensis HOM05D001530 ORTHO05D003676 2.0e-06 57.4 141 31.9
Sabra08G0158900 Salix brachista HOM05D001530 ORTHO05D003676 2.0e-06 57.4 186 28.0
Zm00001eb110540 Zea mays HOM05D001530 ORTHO05D003676 2.0e-06 57.4 144 31.9
Cfa015582 Carpinus fangiana HOM05D001530 ORTHO05D003676 2.6e-06 57.0 176 30.1
Lsat_1_v5_gn_9_81240 Lactuca sativa HOM05D001530 ORTHO05D003676 2.6e-06 57.0 178 29.2
Lj3A761T53 Lonicera japonica HOM05D001530 ORTHO05D003676 2.6e-06 57.0 143 33.6
Nn4g26193 Nelumbo nucifera HOM05D001530 ORTHO05D003676 2.6e-06 57.0 141 31.9
Hund05353 Selenicereus undatus HOM05D001530 ORTHO05D003676 2.6e-06 57.0 169 30.2
vmacro08278 Vaccinium macrocarpon HOM05D001530 ORTHO05D003676 2.6e-06 57.0 141 33.3
arahy.Tifrunner.gnm1.ann1.T8IATB Arachis hypogaea HOM05D001530 ORTHO05D004168 3.4e-06 56.6 202 27.2
Ciclev10021775m.g Citrus clementina HOM05D001530 ORTHO05D003676 3.4e-06 56.6 195 27.2
Potri.008G202600 Populus trichocarpa HOM05D001530 ORTHO05D003676 3.4e-06 56.6 186 28.0
Sed0026563 Sechium edule HOM05D001530 ORTHO05D003676 3.4e-06 56.6 186 27.4
arahy.Tifrunner.gnm1.ann1.6A0E1S Arachis hypogaea HOM05D001530 ORTHO05D004168 4.4e-06 56.2 141 32.6
Ca_21593_v3 Cicer arietinum L. HOM05D001530 ORTHO05D003676 4.4e-06 56.2 134 33.6
Lsat_1_v5_gn_5_187301 Lactuca sativa HOM05D001530 ORTHO05D003676 4.4e-06 56.2 200 27.5
MCO11G640 Micromonas commoda HOM05D005243 ORTHO05D006670 4.4e-06 56.2 169 29.0
Dinv44480 Davidia involucrata HOM05D001530 ORTHO05D004168 5.8e-06 55.8 200 27.5
Duzib138G1359 Durio zibethinus HOM05D001530 ORTHO05D003676 5.8e-06 55.8 189 28.0
SalBow2G1380 Salvia bowleyana HOM05D001530 ORTHO05D003676 5.8e-06 55.8 176 30.7
Actinidia24881 Actinidia chinensis HOM05D001530 ORTHO05D003676 7.5e-06 55.5 188 28.7
Dinv38393 Davidia involucrata HOM05D001530 ORTHO05D004168 7.5e-06 55.5 176 29.0


User provided reference genes

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