Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 4.3e-93 344.7 187 100.0
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 5.3e-67 258.1 191 72.3
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 1.7e-52 209.9 128 76.6
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 1.8e-51 206.5 129 73.6
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 7.0e-51 204.5 129 76.0
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 5.9e-50 201.4 129 72.1
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 5.9e-50 201.4 129 72.9
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 1.0e-49 200.7 128 71.9
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 1.0e-49 200.7 129 70.5
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 1.0e-49 200.7 184 57.1
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 1.0e-49 200.7 129 72.9
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 1.3e-49 200.3 129 72.1
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 1.7e-49 199.9 129 72.1
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 1.7e-49 199.9 167 60.5
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 2.2e-49 199.5 129 72.9
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 2.2e-49 199.5 129 72.1
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 2.2e-49 199.5 129 73.6
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 2.9e-49 199.1 129 74.4
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 2.9e-49 199.1 129 74.4
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 2.9e-49 199.1 129 70.5
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 3.8e-49 198.7 156 61.5
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 3.8e-49 198.7 129 74.4
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 3.8e-49 198.7 129 70.5
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 5.0e-49 198.4 128 71.1
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 6.5e-49 198.0 129 72.9
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 6.5e-49 198.0 129 74.4
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 6.5e-49 198.0 129 71.3
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 8.5e-49 197.6 128 72.7
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 8.5e-49 197.6 129 70.5
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 1.1e-48 197.2 129 72.1
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 1.1e-48 197.2 129 71.3
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 1.1e-48 197.2 129 69.8
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 1.1e-48 197.2 129 69.8
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 1.5e-48 196.8 190 55.8
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 1.5e-48 196.8 129 72.1
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 1.9e-48 196.4 188 57.4
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 1.9e-48 196.4 129 70.5
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 2.5e-48 196.1 183 57.9
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 3.2e-48 195.7 129 69.0
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 3.2e-48 195.7 129 71.3
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 3.2e-48 195.7 177 58.8
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 3.2e-48 195.7 129 72.1
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 4.2e-48 195.3 129 70.5
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 4.2e-48 195.3 128 71.1
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 5.5e-48 194.9 129 71.3
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 5.5e-48 194.9 129 69.8
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 7.2e-48 194.5 129 69.8
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 7.2e-48 194.5 129 70.5
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 9.4e-48 194.1 129 69.0
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 9.4e-48 194.1 129 69.8
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 9.4e-48 194.1 129 70.5
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 9.4e-48 194.1 129 70.5
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 9.4e-48 194.1 129 70.5
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 1.2e-47 193.7 129 69.0
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 1.2e-47 193.7 129 69.8
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 1.2e-47 193.7 129 69.0
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 1.6e-47 193.4 129 72.1
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 1.6e-47 193.4 129 70.5
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 1.6e-47 193.4 128 70.3
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 2.1e-47 193.0 183 56.8
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 2.1e-47 193.0 183 56.8
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 2.1e-47 193.0 129 69.8
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 2.1e-47 193.0 129 68.2
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 2.7e-47 192.6 129 68.2
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 3.6e-47 192.2 129 70.5
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 3.6e-47 192.2 184 57.6
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 4.7e-47 191.8 129 69.0
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 6.1e-47 191.4 129 69.0
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 6.1e-47 191.4 128 71.1
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 8.0e-47 191.0 129 69.0
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 8.0e-47 191.0 129 68.2
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 8.0e-47 191.0 129 69.0
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 8.0e-47 191.0 129 69.8
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 1.0e-46 190.7 129 69.0
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 1.0e-46 190.7 129 69.0
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 1.0e-46 190.7 129 69.0
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 1.0e-46 190.7 129 68.2
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.0e-46 190.7 179 59.2
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 1.0e-46 190.7 128 70.3
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 1.4e-46 190.3 185 55.1
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.8e-46 189.9 129 69.0
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 1.8e-46 189.9 129 69.0
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 2.3e-46 189.5 148 60.8
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 3.0e-46 189.1 161 57.1
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 4.0e-46 188.7 129 68.2
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 4.0e-46 188.7 129 68.2
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 5.2e-46 188.3 144 64.6
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 6.8e-46 188.0 129 71.3
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 6.8e-46 188.0 180 56.7
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 8.8e-46 187.6 167 57.5
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 8.8e-46 187.6 156 60.3
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 1.2e-45 187.2 187 55.6
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 1.2e-45 187.2 129 67.4
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 1.2e-45 187.2 129 68.2
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 1.5e-45 186.8 126 69.0
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 3.4e-45 185.7 141 66.0
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 3.4e-45 185.7 185 55.7
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 5.7e-45 184.9 136 65.4
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 5.7e-45 184.9 129 64.3
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 7.5e-45 184.5 130 68.5
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 9.8e-45 184.1 129 66.7
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 1.3e-44 183.7 129 66.7
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 1.7e-44 183.3 130 66.9
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 2.2e-44 183.0 165 58.2
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 2.2e-44 183.0 130 66.9
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 2.2e-44 183.0 136 66.2
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 3.7e-44 182.2 138 65.2
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 6.3e-44 181.4 129 66.7
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 6.3e-44 181.4 189 53.4
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 3.1e-43 179.1 127 66.1
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 7.0e-43 177.9 115 67.8
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 2.7e-42 176.0 114 71.1
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 3.5e-42 175.6 163 57.1
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 7.7e-42 174.5 229 47.2
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 7.7e-42 174.5 160 54.4
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 1.7e-41 173.3 129 64.3
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 4.7e-39 165.2 103 73.8
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 8.0e-39 164.5 178 48.3
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 1.4e-38 163.7 192 45.3
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 1.8e-38 163.3 123 59.3
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 6.8e-38 161.4 113 67.3
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 1.5e-37 160.2 118 63.6
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 2.0e-37 159.8 168 45.8
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 1.3e-36 157.1 105 67.6
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 2.9e-36 156.0 123 56.1
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 4.9e-36 155.2 216 40.7
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 2.8e-31 139.4 77 85.7
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 1.2e-29 134.0 82 73.2
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 5.8e-29 131.7 87 71.3
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 1.3e-28 130.6 111 54.1
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 1.9e-27 126.7 86 68.6
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 4.1e-27 125.6 129 53.5
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.1e-22 110.9 73 74.0
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 5.2e-22 108.6 72 68.1
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 5.2e-22 108.6 86 61.6
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 2.0e-21 106.7 103 44.7
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 2.6e-21 106.3 72 66.7
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 7.5e-21 104.8 117 41.9
QL10p017282 Quercus lobata HOM05D005248 ORTHO05D006409 1.3e-17 94.0 65 64.6
CAN.G412.4 Capsicum annuum HOM05D005248 ORTHO05D006409 7.3e-16 88.2 59 64.4
TPR.G20580 Trifolium pratense HOM05D005248 ORTHO05D006409 1.4e-14 84.0 118 47.5
Gorai.007G045300 Gossypium raimondii HOM05D005248 ORTHO05D006409 1.2e-07 60.8 36 77.8
TPR.G21935 Trifolium pratense HOM05D005248 ORTHO05D006409 3.1e-06 56.2 35 65.7
AagrBONN_evm.TU.Sc2ySwM_368.2623 Anthoceros agrestis HOM05D005248 ORTHO05D006409 5.2e-06 55.5 51 45.1


User provided reference genes

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