Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0526200 Oryza sativa ssp. japonica HOM05D006396 ORTHO05D008172 6.3e-106 387.9 197 100.0
Zm00001eb198120 Zea mays HOM05D006396 ORTHO05D008172 1.5e-99 366.7 195 93.8
HPP92_009800 Vanilla planifolia HOM05D006396 ORTHO05D008172 1.4e-84 317.0 193 80.8
CsaV3_5G024930 Cucumis sativus L. HOM05D006396 ORTHO05D008172 9.8e-83 310.8 190 78.4
Glyma.16G147700 Glycine max HOM05D006396 ORTHO05D008172 2.2e-82 309.7 190 78.9
VMungo0464G1242 Vigna mungo HOM05D006396 ORTHO05D008172 2.2e-82 309.7 190 78.9
CDE05G2379 Ceratophyllum demersum HOM05D006396 ORTHO05D008172 8.3e-82 307.8 186 81.2
Nn4g22123 Nelumbo nucifera HOM05D006396 ORTHO05D008172 3.1e-81 305.8 191 78.0
MD17G1006700 Malus domestica HOM05D006396 ORTHO05D008172 4.1e-81 305.4 191 80.1
Medtr7g084160 Medicago truncatula HOM05D006396 ORTHO05D008172 4.1e-81 305.4 188 78.7
ATR0582G370 Amborella trichopoda HOM05D006396 ORTHO05D008172 5.4e-81 305.1 188 80.3
Ca_08202_v3 Cicer arietinum L. HOM05D006396 ORTHO05D008172 7.0e-81 304.7 189 78.8
Oeu041974.1 Olea europaea HOM05D006396 ORTHO05D008172 7.0e-81 304.7 192 77.1
ClCG01G007850 Citrullus lanatus HOM05D006396 ORTHO05D008172 9.2e-81 304.3 190 77.4
Rhsim08G0038900 Rhododendron simsii HOM05D006396 ORTHO05D008172 9.2e-81 304.3 189 77.2
arahy.Tifrunner.gnm1.ann1.Q1FZEB Arachis hypogaea HOM05D006396 ORTHO05D008172 2.7e-80 302.8 190 77.9
Cpa.g.sc70.60 Carica papaya HOM05D006396 ORTHO05D008172 2.7e-80 302.8 190 76.3
PGSC0003DMG400014532 Solanum tuberosum HOM05D006396 ORTHO05D008172 2.7e-80 302.8 195 76.9
FAN05G4097 Fragaria x ananassa HOM05D006396 ORTHO05D008172 3.5e-80 302.4 189 78.8
HanXRQChr17g0550901 Helianthus annuus HOM05D006396 ORTHO05D008172 3.5e-80 302.4 194 77.8
RcHm_v2.0_Chr2g0176531 Rosa chinensis HOM05D006396 ORTHO05D008172 3.5e-80 302.4 189 78.3
Nitab4.5_0005452g0030 Nicotiana tabacum HOM05D006396 ORTHO05D008172 4.5e-80 302.0 196 76.5
Phvul.004G069700 Phaseolus vulgaris HOM05D006396 ORTHO05D008172 4.5e-80 302.0 190 77.9
Sopen02g001100 Solanum pennellii HOM05D006396 ORTHO05D008172 4.5e-80 302.0 198 75.3
TAR622G0848 Trochodendron aralioides HOM05D006396 ORTHO05D008172 4.5e-80 302.0 191 77.0
arahy.Tifrunner.gnm1.ann1.P0PZ58 Arachis hypogaea HOM05D006396 ORTHO05D008172 5.9e-80 301.6 190 77.4
FAN14G4577 Fragaria x ananassa HOM05D006396 ORTHO05D008172 5.9e-80 301.6 189 78.3
Solyc02g005210.3 Solanum lycopersicum HOM05D006396 ORTHO05D008172 5.9e-80 301.6 198 75.3
MSTRG.15316 Avicennia marina HOM05D006396 ORTHO05D008172 7.7e-80 301.2 190 78.4
COL.COLO4_13379 Corchorus olitorius HOM05D006396 ORTHO05D008172 7.7e-80 301.2 190 75.8
Gorai.007G072900 Gossypium raimondii HOM05D006396 ORTHO05D008172 7.7e-80 301.2 190 75.8
PGR142G1470 Punica granatum HOM05D006396 ORTHO05D008172 7.7e-80 301.2 190 75.8
Sed0011277 Sechium edule HOM05D006396 ORTHO05D008172 7.7e-80 301.2 191 77.5
Atru.chr6.2699 Acer truncatum HOM05D006396 ORTHO05D008172 1.0e-79 300.8 190 75.8
Haze_14981 Corylus avellana HOM05D006396 ORTHO05D008172 1.0e-79 300.8 190 76.8
Dinv33276 Davidia involucrata HOM05D006396 ORTHO05D008172 1.3e-79 300.4 190 76.8
Gohir.D11G068100 Gossypium hirsutum HOM05D006396 ORTHO05D008172 1.3e-79 300.4 190 75.8
FAN09G2227 Fragaria x ananassa HOM05D006396 ORTHO05D008172 1.7e-79 300.1 189 77.8
Sabra16G0314900 Salix brachista HOM05D006396 ORTHO05D008172 1.7e-79 300.1 187 77.5
GSVIVG01032980001 Vitis vinifera HOM05D006396 ORTHO05D008172 1.7e-79 300.1 190 76.8
Lsat_1_v5_gn_3_104821 Lactuca sativa HOM05D006396 ORTHO05D008172 2.3e-79 299.7 197 76.1
Thecc.04G048300 Theobroma cacao HOM05D006396 ORTHO05D008172 2.3e-79 299.7 190 75.8
Psat0s4148g0040 Pisum sativum HOM05D006396 ORTHO05D008172 2.9e-79 299.3 187 79.1
Sabra16G0313400 Salix brachista HOM05D006396 ORTHO05D008172 2.9e-79 299.3 187 77.5
Prupe.3G313700 Prunus persica HOM05D006396 ORTHO05D008172 3.8e-79 298.9 195 77.4
Ah.03g136630 Amaranthus hybridus HOM05D006396 ORTHO05D008172 5.0e-79 298.5 190 75.8
ECA246G0184 Erigeron canadensis HOM05D006396 ORTHO05D008172 5.0e-79 298.5 189 77.8
Gohir.A11G063800 Gossypium hirsutum HOM05D006396 ORTHO05D008172 6.6e-79 298.1 190 74.7
Nitab4.5_0000139g0180 Nicotiana tabacum HOM05D006396 ORTHO05D008172 6.6e-79 298.1 196 74.5
Cfa007142 Carpinus fangiana HOM05D006396 ORTHO05D008172 8.6e-79 297.7 190 75.8
CiPaw.04G001100 Carya illinoinensis HOM05D006396 ORTHO05D008172 8.6e-79 297.7 185 77.3
Manes.11G076200 Manihot esculenta HOM05D006396 ORTHO05D008172 8.6e-79 297.7 190 75.3
SalBow1G8636 Salvia bowleyana HOM05D006396 ORTHO05D008172 8.6e-79 297.7 190 76.3
TPR.G15411 Trifolium pratense HOM05D006396 ORTHO05D008172 8.6e-79 297.7 187 79.1
vmacro18382 Vaccinium macrocarpon HOM05D006396 ORTHO05D008172 8.6e-79 297.7 189 75.1
Actinidia37717 Actinidia chinensis HOM05D006396 ORTHO05D008172 1.1e-78 297.4 187 77.0
Eucgr.I01598 Eucalyptus grandis HOM05D006396 ORTHO05D008172 1.1e-78 297.4 187 74.9
Hund12907 Selenicereus undatus HOM05D006396 ORTHO05D008172 1.1e-78 297.4 190 75.3
Ciclev10016116m.g Citrus clementina HOM05D006396 ORTHO05D008172 1.5e-78 297.0 185 77.8
SGA_v2.0_scaffold174G39282 Striga asiatica HOM05D006396 ORTHO05D008172 1.5e-78 297.0 185 78.4
Aa31LG2G5850 Aethionema arabicum HOM05D006396 ORTHO05D008172 1.9e-78 296.6 191 78.0
CAN.G1108.4 Capsicum annuum HOM05D006396 ORTHO05D008172 2.5e-78 296.2 196 74.5
Lj7A617G76 Lonicera japonica HOM05D006396 ORTHO05D008172 2.5e-78 296.2 187 76.5
C02p53250 Brassica napus HOM05D006396 ORTHO05D008172 3.3e-78 295.8 195 75.9
A06p41790 Brassica napus HOM05D006396 ORTHO05D008172 4.3e-78 295.4 197 75.6
Lj1g0009632 Lotus japonicus HOM05D006396 ORTHO05D008172 4.3e-78 295.4 187 76.5
Glyma.02G066600 Glycine max HOM05D006396 ORTHO05D008172 5.6e-78 295.0 186 77.4
MD09G1002500 Malus domestica HOM05D006396 ORTHO05D008172 5.6e-78 295.0 191 78.0
Lalb_Chr14g0364101 Lupinus albus HOM05D006396 ORTHO05D008172 7.3e-78 294.7 185 76.8
QL02p069325 Quercus lobata HOM05D006396 ORTHO05D008172 7.3e-78 294.7 190 75.3
BolC7t44094H Brassica oleracea HOM05D006396 ORTHO05D008172 9.5e-78 294.3 197 75.1
BcaNung07107 Brassica carinata HOM05D006396 ORTHO05D008172 1.6e-77 293.5 187 77.0
C07p35740 Brassica napus HOM05D006396 ORTHO05D008172 1.6e-77 293.5 187 77.0
Cc07_g01330 Coffea canephora HOM05D006396 ORTHO05D008172 2.8e-77 292.7 197 73.6
Thhalv10004768m.g Eutrema salsugineum HOM05D006396 ORTHO05D008172 3.6e-77 292.4 197 75.1
Sp2g15830 Schrenkiella parvula HOM05D006396 ORTHO05D008172 3.6e-77 292.4 197 75.1
BcaC06g31047 Brassica carinata HOM05D006396 ORTHO05D008172 4.7e-77 292.0 198 73.7
BraA02t08477Z Brassica rapa HOM05D006396 ORTHO05D008172 4.7e-77 292.0 185 77.3
TWI39G0493 Tripterygium wilfordii HOM05D006396 ORTHO05D008172 8.0e-77 291.2 195 72.8
BolC2t11397H Brassica oleracea HOM05D006396 ORTHO05D008172 1.0e-76 290.8 195 74.4
DCAR_014466 Daucus carota HOM05D006396 ORTHO05D008172 1.0e-76 290.8 186 76.3
Potri.001G463200 Populus trichocarpa HOM05D006396 ORTHO05D008172 1.0e-76 290.8 187 75.9
Hma1.2p1_1389F.1_g279970 Hydrangea macrophylla HOM05D006396 ORTHO05D008172 1.8e-76 290.0 185 77.3
THA.LOC104805299 Tarenaya hassleriana HOM05D006396 ORTHO05D008172 2.3e-76 289.7 190 74.7
Carub.0005s0471 Capsella rubella HOM05D006396 ORTHO05D008172 3.0e-76 289.3 185 77.3
CARHR147730 Cardamine hirsuta HOM05D006396 ORTHO05D008172 3.0e-76 289.3 185 77.8
AUR62017434 Chenopodium quinoa HOM05D006396 ORTHO05D008172 3.0e-76 289.3 190 71.6
THA.LOC104825656 Tarenaya hassleriana HOM05D006396 ORTHO05D008172 3.0e-76 289.3 191 74.3
CANSAT21G0889 Cannabis sativa HOM05D006396 ORTHO05D008172 4.0e-76 288.9 186 74.7
AL5G15550 Arabidopsis lyrata HOM05D006396 ORTHO05D008172 5.2e-76 288.5 185 77.3
Sc03g0005260 Simmondsia chinensis HOM05D006396 ORTHO05D008172 6.8e-76 288.1 184 75.0
CSS0007606 Camellia sinensis var. sinensis HOM05D006396 ORTHO05D008172 1.2e-75 287.3 199 74.9
AUR62037820 Chenopodium quinoa HOM05D006396 ORTHO05D008172 1.2e-75 287.3 190 70.5
PSO478G0237 Papaver somniferum HOM05D006396 ORTHO05D008172 1.2e-75 287.3 193 74.1
unitig_32.g11883 Utricularia gibba HOM05D006396 ORTHO05D008172 1.2e-75 287.3 190 74.7
Aqoxy5G03069 Aquilegia oxysepala HOM05D006396 ORTHO05D008172 1.5e-75 287.0 191 75.4
PSO017G3463 Papaver somniferum HOM05D006396 ORTHO05D008172 2.6e-75 286.2 193 73.6
AT3G26710 Arabidopsis thaliana HOM05D006396 ORTHO05D008172 4.4e-75 285.4 185 76.2
Mapoly0054s0013 Marchantia polymorpha HOM05D006396 ORTHO05D008172 8.0e-69 264.6 200 63.5
SMO146G0400 Selaginella moellendorffii HOM05D006396 ORTHO05D008172 1.3e-66 257.3 197 64.5
Migut.L00475 Erythranthe guttata HOM05D006396 ORTHO05D008172 2.2e-66 256.5 190 69.5
CBR_g29738 Chara braunii HOM05D006396 ORTHO05D008172 9.2e-65 251.1 197 62.9
CSS0000498 Camellia sinensis var. sinensis HOM05D006396 ORTHO05D008172 1.7e-63 246.9 196 67.9
BcaC03g17380 Brassica carinata HOM05D006396 ORTHO05D008172 2.5e-62 243.0 160 76.9
EL10Ac6g13409 Beta vulgaris HOM05D006396 ORTHO05D008172 2.1e-61 240.0 185 64.3
Pp3c2_10260 Physcomitrium patens HOM05D006396 ORTHO05D008172 1.8e-60 236.9 189 60.8
CDE05G2841 Ceratophyllum demersum HOM05D006396 ORTHO05D008172 2.1e-56 223.4 131 83.2
FvH4_6g54310 Fragaria vesca HOM05D006396 ORTHO05D008172 1.2e-51 207.6 129 79.8
MELO3C005101.2 Cucumis melo HOM05D006396 ORTHO05D008172 1.5e-51 207.2 130 77.7
Duzib147G0670 Durio zibethinus HOM05D006396 ORTHO05D008172 2.9e-50 203.0 190 56.3
PRCOL_00002489 Prasinoderma coloniale HOM05D006396 ORTHO05D008172 1.6e-48 197.2 202 50.5
MCO04G060 Micromonas commoda HOM05D006396 ORTHO05D008172 1.0e-47 194.5 183 53.6
SGA_v2.0_scaffold174G39277 Striga asiatica HOM05D006396 ORTHO05D008172 1.7e-42 177.2 180 53.9
AagrBONN_evm.TU.Sc2ySwM_368.425 Anthoceros agrestis HOM05D006396 ORTHO05D008172 2.2e-42 176.8 135 67.4
Peaxi162Scf00818g00123 Petunia axillaris HOM05D006396 ORTHO05D008172 4.9e-42 175.6 107 73.8
SEGI_35956 Sequoiadendron giganteum HOM05D006396 ORTHO05D008172 6.2e-37 158.7 107 64.5
Cre16.g662150 Chlamydomonas reinhardtii HOM05D006396 ORTHO05D008172 9.9e-35 151.4 191 41.9
FAN02G1480 Fragaria x ananassa HOM05D006396 ORTHO05D008172 1.1e-25 121.3 78 78.2
SEGI_37491 Sequoiadendron giganteum HOM05D006396 ORTHO05D008172 2.1e-24 117.1 75 72.0
BolC2t09342H Brassica oleracea HOM05D006396 ORTHO05D000401 1.9e-17 94.0 71 67.6
BolC1t02127H Brassica oleracea HOM05D000589 ORTHO05D000401 1.1e-14 84.7 93 54.8
MD04G1090800 Malus domestica HOM05D006396 ORTHO05D008172 6.9e-12 75.5 47 74.5
C01p21980 Brassica napus HOM05D004448 ORTHO05D015948 2.7e-08 63.5 65 53.8
A02p34690 Brassica napus HOM05D006396 ORTHO05D008172 4.6e-08 62.8 43 65.1
Psat7g159680 Pisum sativum HOM05D006396 ORTHO05D008172 5.1e-07 59.3 42 57.1


User provided reference genes

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