Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0525900 Oryza sativa ssp. japonica HOM05D005005 ORTHO05D006178 1.6e-123 446.0 217 100.0
Os01g0618000 Oryza sativa ssp. japonica HOM05D005005 ORTHO05D006178 6.6e-53 211.5 279 44.1
SalBow6G1153 Salvia bowleyana HOM05D005005 ORTHO05D006178 2.0e-49 199.9 280 38.9
SalBow6G1292 Salvia bowleyana HOM05D005005 ORTHO05D006178 2.0e-49 199.9 280 38.9
MSTRG.5076 Avicennia marina HOM05D005005 ORTHO05D006178 2.2e-48 196.4 281 39.1
HanXRQChr01g0003701 Helianthus annuus HOM05D005005 ORTHO05D006178 2.9e-48 196.1 276 41.3
Hma1.2p1_1796F.1_g302710 Hydrangea macrophylla HOM05D005005 ORTHO05D006178 3.8e-48 195.7 291 38.8
HanXRQChr11g0341211 Helianthus annuus HOM05D005005 ORTHO05D006178 8.4e-48 194.5 286 39.5
Potri.003G194300 Populus trichocarpa HOM05D005005 ORTHO05D006178 1.1e-47 194.1 291 38.1
MELO3C011380.2 Cucumis melo HOM05D005005 ORTHO05D006178 2.4e-47 193.0 292 38.4
CsaV3_6G035720 Cucumis sativus L. HOM05D005005 ORTHO05D006178 2.4e-47 193.0 292 38.4
ClCG08G010820 Citrullus lanatus HOM05D005005 ORTHO05D006178 4.2e-47 192.2 292 38.0
GSVIVG01036640001 Vitis vinifera HOM05D005005 ORTHO05D006178 4.2e-47 192.2 290 38.3
Migut.N01858 Erythranthe guttata HOM05D005005 ORTHO05D006178 7.1e-47 191.4 285 38.2
TWI63G1294 Tripterygium wilfordii HOM05D005005 ORTHO05D006178 7.1e-47 191.4 290 37.6
HPP92_021193 Vanilla planifolia HOM05D005005 ORTHO05D006178 7.1e-47 191.4 290 37.9
CSS0003849 Camellia sinensis var. sinensis HOM05D005005 ORTHO05D006178 9.3e-47 191.0 291 37.8
unitig_61.g26369 Utricularia gibba HOM05D005005 ORTHO05D006178 9.3e-47 191.0 293 37.9
MSTRG.20501 Avicennia marina HOM05D005005 ORTHO05D006178 1.2e-46 190.7 291 37.8
Lj3g0014782 Lotus japonicus HOM05D005005 ORTHO05D006178 1.2e-46 190.7 291 37.8
Potri.001G030900 Populus trichocarpa HOM05D005005 ORTHO05D006178 1.2e-46 190.7 291 37.8
Sed0024277 Sechium edule HOM05D005005 ORTHO05D006178 1.2e-46 190.7 293 37.5
Thecc.10G142900 Theobroma cacao HOM05D005005 ORTHO05D006178 1.2e-46 190.7 291 38.1
Cc09_g07690 Coffea canephora HOM05D005005 ORTHO05D006178 1.6e-46 190.3 295 36.9
SEGI_32986 Sequoiadendron giganteum HOM05D005005 ORTHO05D006178 1.6e-46 190.3 306 35.9
Zm00001eb129080 Zea mays HOM05D005005 ORTHO05D006178 1.6e-46 190.3 316 36.1
Ca_23977_v3 Cicer arietinum L. HOM05D005005 ORTHO05D006178 2.1e-46 189.9 290 38.3
FvH4_7g03700 Fragaria vesca HOM05D005005 ORTHO05D006178 2.1e-46 189.9 292 37.7
PGR119G1568 Punica granatum HOM05D005005 ORTHO05D006178 2.1e-46 189.9 295 37.6
Sopen01g040300 Solanum pennellii HOM05D005005 ORTHO05D006178 2.1e-46 189.9 290 37.2
MD07G1045900 Malus domestica HOM05D005005 ORTHO05D006178 2.7e-46 189.5 291 37.8
Solyc01g096570.3 Solanum lycopersicum HOM05D005005 ORTHO05D006178 2.7e-46 189.5 291 37.1
Actinidia07969 Actinidia chinensis HOM05D005005 ORTHO05D006178 3.5e-46 189.1 289 37.4
ClCG08G002660 Citrullus lanatus HOM05D005005 ORTHO05D006178 3.5e-46 189.1 292 37.3
COL.COLO4_20731 Corchorus olitorius HOM05D005005 ORTHO05D006178 3.5e-46 189.1 292 37.7
Lalb_Chr03g0032191 Lupinus albus HOM05D005005 ORTHO05D006178 3.5e-46 189.1 293 37.5
Peaxi162Scf00220g00417 Petunia axillaris HOM05D005005 ORTHO05D006178 3.5e-46 189.1 291 37.1
Prupe.2G042700 Prunus persica HOM05D005005 ORTHO05D006178 3.5e-46 189.1 291 37.8
Cpa.g.sc169.39 Carica papaya HOM05D005005 ORTHO05D006178 4.6e-46 188.7 291 37.8
Dinv32010 Davidia involucrata HOM05D005005 ORTHO05D006178 4.6e-46 188.7 291 37.5
Manes.11G007250 Manihot esculenta HOM05D005005 ORTHO05D006178 4.6e-46 188.7 290 37.6
Phvul.011G201500 Phaseolus vulgaris HOM05D005005 ORTHO05D006178 4.6e-46 188.7 291 37.8
RcHm_v2.0_Chr1g0326491 Rosa chinensis HOM05D005005 ORTHO05D006178 4.6e-46 188.7 291 37.8
PGSC0003DMG403003285 Solanum tuberosum HOM05D005005 ORTHO05D006178 4.6e-46 188.7 291 36.8
Aqoxy2G00413 Aquilegia oxysepala HOM05D005005 ORTHO05D006178 6.0e-46 188.3 302 36.4
FAN10G2457 Fragaria x ananassa HOM05D005005 ORTHO05D006178 6.0e-46 188.3 292 37.7
Lalb_Chr19g0132951 Lupinus albus HOM05D005005 ORTHO05D006178 6.0e-46 188.3 293 37.2
Manes.04G156500 Manihot esculenta HOM05D005005 ORTHO05D006178 6.0e-46 188.3 289 37.4
THA.LOC104826755 Tarenaya hassleriana HOM05D005005 ORTHO05D006178 6.0e-46 188.3 292 37.3
Actinidia06222 Actinidia chinensis HOM05D005005 ORTHO05D006178 7.9e-46 188.0 291 37.1
arahy.Tifrunner.gnm1.ann1.HP7LLE Arachis hypogaea HOM05D005005 ORTHO05D006178 7.9e-46 188.0 291 37.5
Migut.B01249 Erythranthe guttata HOM05D005005 ORTHO05D006178 7.9e-46 188.0 294 37.1
Glyma.13G192200 Glycine max HOM05D005005 ORTHO05D006178 7.9e-46 188.0 291 37.5
Gorai.010G215900 Gossypium raimondii HOM05D005005 ORTHO05D006178 7.9e-46 188.0 291 38.1
MD02G1278000 Malus domestica HOM05D005005 ORTHO05D006178 1.0e-45 187.6 291 37.5
CAN.G134.16 Capsicum annuum HOM05D005005 ORTHO05D006178 1.3e-45 187.2 291 37.1
CiPaw.14G009200 Carya illinoinensis HOM05D005005 ORTHO05D006178 1.3e-45 187.2 290 37.2
Duzib106G1278 Durio zibethinus HOM05D005005 ORTHO05D006178 1.3e-45 187.2 291 37.8
Gohir.A10G189100 Gossypium hirsutum HOM05D005005 ORTHO05D006178 1.3e-45 187.2 291 37.5
Gohir.D10G197000 Gossypium hirsutum HOM05D005005 ORTHO05D006178 1.3e-45 187.2 291 37.5
Gorai.011G220200 Gossypium raimondii HOM05D005005 ORTHO05D006178 1.3e-45 187.2 291 37.5
Lsat_1_v5_gn_1_117920 Lactuca sativa HOM05D005005 ORTHO05D006178 1.3e-45 187.2 300 37.3
Nitab4.5_0002838g0130 Nicotiana tabacum HOM05D005005 ORTHO05D006178 1.3e-45 187.2 291 37.1
Os01g0280000 Oryza sativa ssp. japonica HOM05D005005 ORTHO05D006178 1.3e-45 187.2 301 36.9
VMungo1127G1151 Vigna mungo HOM05D005005 ORTHO05D006178 1.3e-45 187.2 292 37.3
Glyma.15G230500 Glycine max HOM05D005005 ORTHO05D006178 1.8e-45 186.8 291 37.5
Gohir.D06G184600 Gossypium hirsutum HOM05D005005 ORTHO05D006178 1.8e-45 186.8 291 37.8
vmacro13768 Vaccinium macrocarpon HOM05D005005 ORTHO05D006178 2.3e-45 186.4 292 37.3
CiPaw.14G111500 Carya illinoinensis HOM05D005005 ORTHO05D006178 3.0e-45 186.0 300 36.7
FAN01G1292 Fragaria x ananassa HOM05D005005 ORTHO05D006178 3.0e-45 186.0 292 37.3
Oeu013069.1 Olea europaea HOM05D005005 ORTHO05D006178 3.0e-45 186.0 290 36.6
Duzib128G0392 Durio zibethinus HOM05D005005 ORTHO05D006178 3.9e-45 185.7 291 37.1
QL04p021121 Quercus lobata HOM05D005005 ORTHO05D006178 3.9e-45 185.7 291 37.1
QL93p0049_0022 Quercus lobata HOM05D005005 ORTHO05D006178 3.9e-45 185.7 291 37.1
THA.LOC104799326 Tarenaya hassleriana HOM05D005005 ORTHO05D006178 3.9e-45 185.7 295 36.9
DCAR_025325 Daucus carota HOM05D005005 ORTHO05D006178 5.1e-45 185.3 289 37.0
GSVIVG01037328001 Vitis vinifera HOM05D005005 ORTHO05D006178 5.1e-45 185.3 279 39.1
Rhsim07G0069000 Rhododendron simsii HOM05D005005 ORTHO05D006178 8.7e-45 184.5 292 37.0
CANSAT54G2608 Cannabis sativa HOM05D005005 ORTHO05D006178 1.5e-44 183.7 303 36.3
Cfa010948 Carpinus fangiana HOM05D005005 ORTHO05D006178 1.5e-44 183.7 305 36.4
Atru.chr3.3001 Acer truncatum HOM05D005005 ORTHO05D006178 1.9e-44 183.3 302 36.1
Gohir.A06G174600 Gossypium hirsutum HOM05D005005 ORTHO05D006178 1.9e-44 183.3 291 37.5
Oeu014630.2 Olea europaea HOM05D005005 ORTHO05D006178 1.9e-44 183.3 291 35.7
PSO339G0382 Papaver somniferum HOM05D005005 ORTHO05D006178 1.9e-44 183.3 310 35.5
ECA248G3166 Erigeron canadensis HOM05D005005 ORTHO05D006178 5.6e-44 181.8 293 36.9
FAN06G0520 Fragaria x ananassa HOM05D005005 ORTHO05D006178 5.6e-44 181.8 302 36.4
Cfa009893 Carpinus fangiana HOM05D005005 ORTHO05D006178 7.4e-44 181.4 302 36.1
Eucgr.J00681 Eucalyptus grandis HOM05D005005 ORTHO05D006178 7.4e-44 181.4 300 36.0
MBI19_g20792_MAGBIO Magnolia biondii HOM05D005005 ORTHO05D006178 7.4e-44 181.4 149 58.4
PGR031G0380 Punica granatum HOM05D005005 ORTHO05D006178 7.4e-44 181.4 286 36.4
ATR1096G052 Amborella trichopoda HOM05D005005 ORTHO05D006178 1.3e-43 180.6 150 58.0
PSO384G4770 Papaver somniferum HOM05D005005 ORTHO05D006178 1.3e-43 180.6 160 55.6
AUR62006554 Chenopodium quinoa HOM05D005005 ORTHO05D006178 2.1e-43 179.9 160 55.6
Lj7A493G34 Lonicera japonica HOM05D005005 ORTHO05D006178 2.1e-43 179.9 299 35.8
TPR.G8528 Trifolium pratense HOM05D005005 ORTHO05D006178 2.1e-43 179.9 291 36.4
TWI38G1285 Tripterygium wilfordii HOM05D005005 ORTHO05D006178 2.8e-43 179.5 291 35.7
Nn7g36763 Nelumbo nucifera HOM05D005005 ORTHO05D006178 4.8e-43 178.7 302 35.1
Psat4g145120 Pisum sativum HOM05D005005 ORTHO05D006178 1.1e-42 177.6 300 35.3
Hund07434 Selenicereus undatus HOM05D005005 ORTHO05D006178 1.1e-42 177.6 158 55.7
Aqoxy1G00392 Aquilegia oxysepala HOM05D005005 ORTHO05D006178 1.4e-42 177.2 150 57.3
AUR62000208 Chenopodium quinoa HOM05D005005 ORTHO05D006178 1.4e-42 177.2 160 55.6
TAR633G0536 Trochodendron aralioides HOM05D005005 ORTHO05D006178 1.4e-42 177.2 303 35.3
Haze_02996 Corylus avellana HOM05D005005 ORTHO05D006178 4.0e-42 175.6 315 35.6
Ciclev10027284m.g Citrus clementina HOM05D005005 ORTHO05D006178 5.3e-42 175.3 288 36.5
Ciclev10001735m.g Citrus clementina HOM05D005005 ORTHO05D006178 6.9e-42 174.9 149 57.7
Sabra03G0145000 Salix brachista HOM05D005005 ORTHO05D006178 6.9e-42 174.9 326 34.0
Hund21969 Selenicereus undatus HOM05D005005 ORTHO05D006178 9.0e-42 174.5 305 34.1
Ah.06g194700 Amaranthus hybridus HOM05D005152 ORTHO05D006178 1.5e-41 173.7 160 54.4
Eucgr.G03212 Eucalyptus grandis HOM05D005005 ORTHO05D006178 2.6e-41 172.9 149 55.0
EL10Ac4g10102 Beta vulgaris HOM05D005005 ORTHO05D006178 3.4e-41 172.6 159 53.5
CDE04G1798 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 3.4e-41 172.6 147 56.5
Sc06g0004720 Simmondsia chinensis HOM05D005005 ORTHO05D006178 3.4e-41 172.6 306 33.3
CDE07G1185 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 4.5e-41 172.2 147 56.5
QL01p016772 Quercus lobata HOM05D005005 ORTHO05D006178 7.6e-41 171.4 151 55.6
arahy.Tifrunner.gnm1.ann1.1L47SY Arachis hypogaea HOM05D005005 ORTHO05D006178 2.9e-40 169.5 328 33.2
Psat7g158200 Pisum sativum HOM05D005005 ORTHO05D006178 1.4e-39 167.2 181 47.5
SalBow6G0970 Salvia bowleyana HOM05D005005 ORTHO05D006178 3.2e-39 166.0 147 54.4
Ciclev10027488m.g Citrus clementina HOM05D005005 ORTHO05D006178 7.1e-39 164.9 277 36.5
Psat2g140280 Pisum sativum HOM05D005005 ORTHO05D006178 7.1e-39 164.9 154 53.2
SGA_v2.0_scaffold232G43481 Striga asiatica HOM05D005005 ORTHO05D006178 9.3e-39 164.5 142 55.6
Sabra01G0022200 Salix brachista HOM05D005005 ORTHO05D006178 1.6e-38 163.7 344 31.4
Ciclev10027071m.g Citrus clementina HOM05D005005 ORTHO05D006178 4.6e-38 162.2 155 52.9
FAN03G0125 Fragaria x ananassa HOM05D005005 ORTHO05D006178 3.9e-37 159.1 367 30.2
Psat7g158320 Pisum sativum HOM05D005005 ORTHO05D006178 5.1e-37 158.7 154 51.3
SMO367G0260 Selaginella moellendorffii HOM05D005005 ORTHO05D006178 1.8e-34 150.2 290 31.4
CBR_g41532 Chara braunii HOM05D005005 ORTHO05D006178 4.0e-34 149.1 167 48.5
Psat0s3527g0040 Pisum sativum HOM05D005005 ORTHO05D006178 4.5e-33 145.6 155 49.0
Ciclev10027527m.g Citrus clementina HOM05D005005 ORTHO05D006178 6.5e-32 141.7 254 35.0
Haze_23255 Corylus avellana HOM05D005005 ORTHO05D006178 3.2e-31 139.4 268 32.1
Psat1g148000 Pisum sativum HOM05D005005 ORTHO05D004359 6.7e-29 131.7 141 47.5
Psat1g148040 Pisum sativum HOM05D005005 ORTHO05D006178 2.5e-28 129.8 141 46.8
CDE04G0220 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 2.1e-27 126.7 247 31.2
CDE02G0295 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 2.2e-24 116.7 150 43.3
CDE09G0004 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 2.9e-24 116.3 150 43.3
Cre01.g033950 Chlamydomonas reinhardtii HOM05D005005 ORTHO05D006178 1.1e-23 114.4 142 43.7
SalBow5G3115 Salvia bowleyana HOM05D005005 ORTHO05D006178 3.2e-23 112.8 261 33.3
TAR636G3532 Trochodendron aralioides HOM05D005005 ORTHO05D006178 4.2e-23 112.5 179 36.3
Nitab4.5_0004168g0100 Nicotiana tabacum HOM05D005005 ORTHO05D006178 5.9e-17 92.0 86 53.5
Psat2g140320 Pisum sativum HOM05D005005 ORTHO05D004780 7.7e-17 91.7 75 58.7
CDE02G2432 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 1.0e-13 81.3 85 47.1
Oeu013075.1 Olea europaea HOM05D005005 ORTHO05D006178 3.9e-13 79.3 73 50.7
CDE02G4802 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 1.7e-11 73.9 115 38.3
Psat4g190960 Pisum sativum HOM05D005005 ORTHO05D006178 4.1e-10 69.3 108 36.1
PRCOL_00004087 Prasinoderma coloniale HOM05D000406 ORTHO05D003425 5.3e-10 68.9 151 34.4
CDE09G0976 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 8.5e-08 61.6 133 33.8


User provided reference genes

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