Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0524300 Oryza sativa ssp. japonica HOM05D001551 ORTHO05D005859 1.8e-143 512.7 276 100.0
Zm00001eb170550 Zea mays HOM05D001551 ORTHO05D005859 3.8e-130 468.4 233 91.8
TAR629G2635 Trochodendron aralioides HOM05D001551 ORTHO05D005859 8.6e-114 414.1 231 78.8
Lj1g0018460 Lotus japonicus HOM05D001551 ORTHO05D005859 1.2e-112 410.2 231 77.1
Thecc.03G141800 Theobroma cacao HOM05D001551 ORTHO05D005859 2.8e-112 409.1 231 78.4
Duzib205G1491 Durio zibethinus HOM05D001551 ORTHO05D005859 1.4e-111 406.8 229 78.6
Glyma.06G163100 Glycine max HOM05D001551 ORTHO05D005859 1.8e-111 406.4 232 75.0
Atru.chr6.1937 Acer truncatum HOM05D001551 ORTHO05D005859 5.2e-111 404.8 231 76.6
Hma1.2p1_0577F.1_g182180 Hydrangea macrophylla HOM05D001551 ORTHO05D005859 5.2e-111 404.8 231 77.5
Phvul.009G160500 Phaseolus vulgaris HOM05D001551 ORTHO05D005859 6.8e-111 404.4 231 74.5
GSVIVG01008663001 Vitis vinifera HOM05D001551 ORTHO05D005859 6.8e-111 404.4 231 77.9
Glyma.04G202400 Glycine max HOM05D001551 ORTHO05D005859 8.9e-111 404.1 231 74.9
Cc04_g05770 Coffea canephora HOM05D001551 ORTHO05D005859 2.0e-110 402.9 231 76.2
PSO017G1738 Papaver somniferum HOM05D001551 ORTHO05D005859 2.6e-110 402.5 231 77.5
arahy.Tifrunner.gnm1.ann1.D8JD58 Arachis hypogaea HOM05D001551 ORTHO05D005859 3.4e-110 402.1 231 74.9
arahy.Tifrunner.gnm1.ann1.Q2CTBB Arachis hypogaea HOM05D001551 ORTHO05D005859 3.4e-110 402.1 231 74.9
MD06G1129000 Malus domestica HOM05D001551 ORTHO05D005859 5.8e-110 401.4 231 76.2
QL10p000300 Quercus lobata HOM05D001551 ORTHO05D005859 7.5e-110 401.0 231 74.9
TWI23G1313 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 7.5e-110 401.0 232 77.6
Manes.14G043800 Manihot esculenta HOM05D001551 ORTHO05D005859 1.3e-109 400.2 229 76.9
PSO478G5149 Papaver somniferum HOM05D001551 ORTHO05D005859 1.3e-109 400.2 231 77.1
Cpa.g.sc2215.3 Carica papaya HOM05D001551 ORTHO05D005859 1.7e-109 399.8 231 75.8
Ca_10874_v3 Cicer arietinum L. HOM05D001551 ORTHO05D005859 1.7e-109 399.8 231 74.9
Medtr3g098510 Medicago truncatula HOM05D001551 ORTHO05D005859 2.9e-109 399.1 231 73.6
Ciclev10032408m.g Citrus clementina HOM05D001551 ORTHO05D005859 3.7e-109 398.7 232 75.9
MD14G1145900 Malus domestica HOM05D001551 ORTHO05D005859 6.4e-109 397.9 231 75.8
Cfa018920 Carpinus fangiana HOM05D001551 ORTHO05D005859 8.3e-109 397.5 231 74.5
Lalb_Chr08g0237601 Lupinus albus HOM05D001551 ORTHO05D005859 8.3e-109 397.5 231 74.0
Gohir.A11G038800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.4e-108 396.7 229 75.5
Gohir.D11G042000 Gossypium hirsutum HOM05D001551 ORTHO05D005859 3.2e-108 395.6 229 75.1
Aqoxy5G03068 Aquilegia oxysepala HOM05D001551 ORTHO05D005859 4.1e-108 395.2 231 74.5
CiPaw.12G000400 Carya illinoinensis HOM05D001551 ORTHO05D005859 7.0e-108 394.4 231 74.5
COL.COLO4_37269 Corchorus olitorius HOM05D001551 ORTHO05D005859 7.0e-108 394.4 229 74.7
Gohir.A03G055800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 7.0e-108 394.4 231 75.8
CDE02G1325 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 9.2e-108 394.0 231 77.5
Potri.012G109800 Populus trichocarpa HOM05D001551 ORTHO05D005859 2.0e-107 392.9 229 74.7
Solyc06g068760.3 Solanum lycopersicum HOM05D001551 ORTHO05D005859 3.5e-107 392.1 231 74.0
Gorai.007G045200 Gossypium raimondii HOM05D001551 ORTHO05D005859 6.0e-107 391.3 230 74.8
RcHm_v2.0_Chr7g0188531 Rosa chinensis HOM05D001551 ORTHO05D005859 7.8e-107 391.0 231 74.0
Lj9C488G12 Lonicera japonica HOM05D001551 ORTHO05D005859 1.0e-106 390.6 233 73.4
Sabra12G0080000 Salix brachista HOM05D001551 ORTHO05D005859 1.0e-106 390.6 231 73.6
THA.LOC104808046 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 1.0e-106 390.6 235 73.6
CSS0002484 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 3.0e-106 389.0 231 74.0
FAN04G0171 Fragaria x ananassa HOM05D001551 ORTHO05D005859 3.9e-106 388.7 231 73.6
CSS0038575 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 6.6e-106 387.9 231 74.0
FvH4_5g09710 Fragaria vesca HOM05D001551 ORTHO05D005859 8.6e-106 387.5 231 73.2
Gorai.003G117100 Gossypium raimondii HOM05D001551 ORTHO05D005859 8.6e-106 387.5 231 74.9
Sopen06g026040 Solanum pennellii HOM05D001551 ORTHO05D005859 8.6e-106 387.5 232 73.7
FAN13G0525 Fragaria x ananassa HOM05D001551 ORTHO05D005859 1.5e-105 386.7 231 72.7
Psat5g055440 Pisum sativum HOM05D001551 ORTHO05D005859 1.5e-105 386.7 231 71.9
Cfa018698 Carpinus fangiana HOM05D001551 ORTHO05D005859 1.9e-105 386.3 231 72.7
Prupe.5G140300 Prunus persica HOM05D001551 ORTHO05D005859 1.9e-105 386.3 231 74.5
CsaV3_1G009930 Cucumis sativus L. HOM05D001551 ORTHO05D005859 2.5e-105 386.0 229 74.2
FAN08G3006 Fragaria x ananassa HOM05D001551 ORTHO05D005859 3.3e-105 385.6 231 73.2
PGSC0003DMG400025575 Solanum tuberosum HOM05D001551 ORTHO05D005859 3.3e-105 385.6 232 73.3
FAN18G2118 Fragaria x ananassa HOM05D001551 ORTHO05D005859 4.3e-105 385.2 231 72.7
TAR371G0091 Trochodendron aralioides HOM05D001551 ORTHO05D005859 4.3e-105 385.2 231 74.5
MELO3C002387.2 Cucumis melo HOM05D001551 ORTHO05D005859 5.6e-105 384.8 229 73.8
MSTRG.22814 Avicennia marina HOM05D001551 ORTHO05D005859 1.6e-104 383.3 231 73.2
Rhsim12G0181300 Rhododendron simsii HOM05D001551 ORTHO05D005859 1.6e-104 383.3 232 72.4
EL10Ac5g11272 Beta vulgaris HOM05D001551 ORTHO05D005859 2.1e-104 382.9 231 72.3
Lsat_1_v5_gn_5_9381 Lactuca sativa HOM05D001551 ORTHO05D005859 2.8e-104 382.5 239 72.0
BraA01t01589Z Brassica rapa HOM05D001551 ORTHO05D005859 3.6e-104 382.1 233 72.5
BcaC09g50811 Brassica carinata HOM05D001551 ORTHO05D005859 6.2e-104 381.3 233 72.5
BcaNung03998 Brassica carinata HOM05D001551 ORTHO05D005859 6.2e-104 381.3 233 72.5
CAN.G1089.16 Capsicum annuum HOM05D001551 ORTHO05D005859 6.2e-104 381.3 232 72.0
Actinidia08913 Actinidia chinensis HOM05D001551 ORTHO05D005859 8.0e-104 380.9 231 73.2
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 1.1e-103 380.6 226 73.5
Eucgr.K02189 Eucalyptus grandis HOM05D001551 ORTHO05D005859 1.4e-103 380.2 229 72.5
A01p16340 Brassica napus HOM05D001551 ORTHO05D005859 1.8e-103 379.8 233 72.1
Nitab4.5_0007345g0100 Nicotiana tabacum HOM05D001551 ORTHO05D005859 1.8e-103 379.8 232 72.8
C01p20490 Brassica napus HOM05D001551 ORTHO05D005859 4.0e-103 378.6 233 71.7
Migut.I00664 Erythranthe guttata HOM05D001551 ORTHO05D005859 8.9e-103 377.5 231 72.3
Nitab4.5_0012775g0030 Nicotiana tabacum HOM05D001551 ORTHO05D005859 1.2e-102 377.1 232 72.0
Sed0027340 Sechium edule HOM05D001551 ORTHO05D005859 1.2e-102 377.1 229 72.9
SalBow7G1162 Salvia bowleyana HOM05D001551 ORTHO05D005859 1.5e-102 376.7 231 71.9
HanXRQChr05g0155371 Helianthus annuus HOM05D001551 ORTHO05D005859 2.0e-102 376.3 235 71.5
Aa31LG3G7480 Aethionema arabicum HOM05D001551 ORTHO05D005859 9.8e-102 374.0 231 71.9
BolC1t01980H Brassica oleracea HOM05D001551 ORTHO05D005859 1.3e-101 373.6 233 70.8
Rhsim08G0198700 Rhododendron simsii HOM05D001551 ORTHO05D005859 1.7e-101 373.2 229 71.6
PGR044G0460 Punica granatum HOM05D001551 ORTHO05D005859 2.9e-101 372.5 230 71.7
vmacro16761 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 2.9e-101 372.5 237 70.9
Actinidia36846 Actinidia chinensis HOM05D001551 ORTHO05D005859 3.7e-101 372.1 231 73.2
AUR62043378 Chenopodium quinoa HOM05D001551 ORTHO05D005859 4.9e-101 371.7 251 66.5
vmacro19115 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 1.4e-100 370.2 210 74.8
MBI07_g13940_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 1.9e-100 369.8 264 67.4
AUR62032208 Chenopodium quinoa HOM05D001551 ORTHO05D005859 2.4e-100 369.4 249 67.1
Manes.06G127400 Manihot esculenta HOM05D001551 ORTHO05D005859 4.1e-100 368.6 231 72.7
Actinidia18288 Actinidia chinensis HOM05D001551 ORTHO05D005859 9.2e-100 367.5 213 75.1
Hund10026 Selenicereus undatus HOM05D001551 ORTHO05D005859 1.6e-99 366.7 224 71.4
Dinv13710 Davidia involucrata HOM05D001551 ORTHO05D005859 2.7e-99 365.9 209 76.6
Sp6g13170 Schrenkiella parvula HOM05D001551 ORTHO05D005859 3.5e-99 365.5 231 69.7
AT5G51020 Arabidopsis thaliana HOM05D001551 ORTHO05D005859 7.8e-99 364.4 231 69.7
Sc04g0000180 Simmondsia chinensis HOM05D001551 ORTHO05D005859 1.3e-98 363.6 245 67.3
AL8G25230 Arabidopsis lyrata HOM05D001551 ORTHO05D005859 2.3e-98 362.8 231 69.3
Carub.0008s1102 Capsella rubella HOM05D001551 ORTHO05D005859 2.3e-98 362.8 231 69.7
Sp7g23070 Schrenkiella parvula HOM05D001551 ORTHO05D005859 3.9e-98 362.1 233 70.0
unitig_27.g25103 Utricularia gibba HOM05D001551 ORTHO05D005859 3.9e-98 362.1 227 72.2
CARHR257170 Cardamine hirsuta HOM05D001551 ORTHO05D005859 8.6e-98 360.9 231 69.3
Gohir.D03G110700 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.9e-97 359.8 205 77.1
BraA03t10931Z Brassica rapa HOM05D001551 ORTHO05D005859 7.3e-97 357.8 231 68.0
Sed0019000 Sechium edule HOM05D001551 ORTHO05D005859 9.5e-97 357.5 227 72.7
Oeu051186.2 Olea europaea HOM05D001551 ORTHO05D005859 1.1e-95 354.0 251 64.1
Pp3c5_10130 Physcomitrium patens HOM05D001551 ORTHO05D005859 1.4e-95 353.6 228 66.7
THA.LOC104811554 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 1.8e-95 353.2 202 76.2
SGA_v2.0_scaffold5G02806 Striga asiatica HOM05D001551 ORTHO05D005859 4.0e-95 352.1 235 69.4
TWI39G0428 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 1.2e-94 350.5 231 71.0
AagrBONN_evm.TU.Sc2ySwM_368.1985 Anthoceros agrestis HOM05D001551 ORTHO05D005859 3.4e-94 349.0 202 71.8
Thhalv10014437m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 1.1e-92 344.0 203 75.4
Peaxi162Scf00207g00254 Petunia axillaris HOM05D001551 ORTHO05D005859 1.4e-92 343.6 232 67.2
Pp3c6_23000 Physcomitrium patens HOM05D001551 ORTHO05D005859 2.4e-92 342.8 199 72.4
DCAR_025640 Daucus carota HOM05D001551 ORTHO05D005859 4.1e-92 342.0 229 66.4
A03p16410 Brassica napus HOM05D001551 ORTHO05D005859 9.2e-92 340.9 256 60.9
Mapoly0002s0145 Marchantia polymorpha HOM05D001551 ORTHO05D005859 9.2e-92 340.9 202 71.3
SMO118G0459 Selaginella moellendorffii HOM05D001551 ORTHO05D005859 2.3e-90 336.3 203 69.0
BcaC01g06112 Brassica carinata HOM05D001551 ORTHO05D005859 3.0e-90 335.9 233 65.2
TPR.G16934 Trifolium pratense HOM05D001551 ORTHO05D005859 2.5e-89 332.8 192 75.0
SGA_v2.0_scaffold37G14673 Striga asiatica HOM05D001551 ORTHO05D005859 1.6e-88 330.1 186 77.4
Actinidia25511 Actinidia chinensis HOM05D001551 ORTHO05D005859 8.1e-88 327.8 219 68.5
ClCG03G004050 Citrullus lanatus HOM05D001551 ORTHO05D005859 2.4e-87 326.2 196 74.0
SEGI_34423 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 4.1e-84 315.5 198 68.7
Nn3g16260 Nelumbo nucifera HOM05D001551 ORTHO05D005859 2.3e-82 309.7 164 81.7
Haze_07088 Corylus avellana HOM05D001551 ORTHO05D005859 5.1e-82 308.5 230 61.7
AUR62011939 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.1e-79 300.8 252 57.9
Nn4g22121 Nelumbo nucifera HOM05D001551 ORTHO05D005859 3.8e-77 292.4 231 58.9
CBR_g30803 Chara braunii HOM05D001551 ORTHO05D005859 1.6e-75 287.0 201 59.7
AUR62043863 Chenopodium quinoa HOM05D001551 ORTHO05D005859 6.6e-74 281.6 298 48.7
Hund02515 Selenicereus undatus HOM05D001551 ORTHO05D005859 4.5e-70 268.9 259 53.7
Duzib084G0881 Durio zibethinus HOM05D001551 ORTHO05D005859 9.9e-70 267.7 161 73.3
MBI07_g35983_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 4.6e-67 258.8 162 73.5
Dinv23235 Davidia involucrata HOM05D001551 ORTHO05D005859 1.5e-65 253.8 143 78.3
MBI07_g48061_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 4.3e-65 252.3 138 81.2
HPP92_009738 Vanilla planifolia HOM05D001551 ORTHO05D005859 3.8e-61 239.2 183 65.0
Thhalv10025970m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 6.5e-53 211.8 118 78.8
CDE06G0746 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 8.2e-48 194.9 183 55.2
Sc04g0000140 Simmondsia chinensis HOM05D001551 ORTHO05D005859 4.6e-43 179.1 121 63.6
Sc04g0000130 Simmondsia chinensis HOM05D001551 ORTHO05D005859 6.5e-37 158.7 89 78.7
CSS0038626 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 7.0e-31 138.7 105 63.8
CSS0016811 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 2.3e-26 123.6 82 72.0
FvH4_6g04500 Fragaria vesca HOM05D001551 ORTHO05D005859 2.6e-25 120.2 72 77.8
SEGI_13041 Sequoiadendron giganteum HOM05D001551 ORTHO05D005859 4.4e-25 119.4 68 69.1
Pp3c16_270 Physcomitrium patens HOM05D001551 ORTHO05D005859 6.3e-24 115.5 65 73.8
Psat3g122800 Pisum sativum HOM05D001551 ORTHO05D005859 7.2e-20 102.1 66 69.7
HanXRQChr05g0130591 Helianthus annuus HOM05D001551 ORTHO05D005859 4.0e-18 96.3 52 78.8
BcaC01g06064 Brassica carinata HOM05D001551 ORTHO05D005859 3.1e-15 86.7 86 54.7
C03p19300 Brassica napus HOM05D001551 ORTHO05D042173 7.2e-12 75.5 43 67.4
Psat5g306440 Pisum sativum HOM05D001551 ORTHO05D006558 7.2e-12 75.5 51 68.6
Sabra15G0128500 Salix brachista HOM05D001551 ORTHO05D003058 2.1e-11 73.9 70 54.3
ECA246G1749 Erigeron canadensis HOM05D001551 ORTHO05D005859 3.4e-09 66.6 41 68.3
Psat7g261640 Pisum sativum HOM05D001551 ORTHO05D005859 4.4e-09 66.2 62 51.6
Ah.02g114530 Amaranthus hybridus HOM05D001551 ORTHO05D005859 4.8e-08 62.8 49 53.1
Ah.11g046990 Amaranthus hybridus HOM05D001551 ORTHO05D005859 6.3e-08 62.4 49 51.0
Cfa013473 Carpinus fangiana HOM05D001551 ORTHO05D005859 5.4e-07 59.3 39 66.7


User provided reference genes

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