Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0523500 Oryza sativa ssp. japonica HOM05D003773 ORTHO05D004377 3.6e-88 328.2 160 100.0
Os08g0512300 Oryza sativa ssp. japonica HOM05D003773 ORTHO05D004377 3.0e-50 202.2 108 89.8
Zm00001eb035310 Zea mays HOM05D003773 ORTHO05D004377 4.7e-48 194.9 110 82.7
COL.COLO4_03532 Corchorus olitorius HOM05D003773 ORTHO05D004377 2.9e-37 159.1 105 68.6
Hund25164 Selenicereus undatus HOM05D003773 ORTHO05D004377 3.8e-37 158.7 116 63.8
Nitab4.5_0007004g0040 Nicotiana tabacum HOM05D003773 ORTHO05D004377 8.4e-37 157.5 111 64.9
vmacro23351 Vaccinium macrocarpon HOM05D003773 ORTHO05D004377 7.1e-36 154.5 110 61.8
vmacro03401 Vaccinium macrocarpon HOM05D003773 ORTHO05D004377 2.1e-35 152.9 110 60.9
AUR62035657 Chenopodium quinoa HOM05D003773 ORTHO05D004377 1.0e-34 150.6 103 66.0
A10p25590 Brassica napus HOM05D003773 ORTHO05D004377 1.3e-34 150.2 108 62.0
BraA10t44626Z Brassica rapa HOM05D003773 ORTHO05D004377 1.3e-34 150.2 108 62.0
Sabra13G0011200 Salix brachista HOM05D003773 ORTHO05D004377 1.7e-34 149.8 125 56.0
QL08p034440 Quercus lobata HOM05D003773 ORTHO05D004377 3.0e-34 149.1 106 63.2
AUR62017150 Chenopodium quinoa HOM05D003773 ORTHO05D004377 3.9e-34 148.7 104 64.4
Haze_12989 Corylus avellana HOM05D003773 ORTHO05D004377 3.9e-34 148.7 103 65.0
HPP92_004888 Vanilla planifolia HOM05D003773 ORTHO05D004377 1.1e-33 147.1 108 62.0
Lj3C848T13 Lonicera japonica HOM05D003773 ORTHO05D004377 2.5e-33 146.0 106 61.3
Glyma.08G111200 Glycine max HOM05D003773 ORTHO05D004377 1.4e-31 140.2 90 70.0
Sc07g0000800 Simmondsia chinensis HOM05D003773 ORTHO05D004377 1.4e-31 140.2 92 71.7
Sopen03g037520 Solanum pennellii HOM05D003773 ORTHO05D004377 1.8e-31 139.8 95 67.4
FAN09G4222 Fragaria x ananassa HOM05D003773 ORTHO05D004377 4.0e-31 138.7 109 58.7
Solyc03g118570.4 Solanum lycopersicum HOM05D003773 ORTHO05D004377 4.0e-31 138.7 94 68.1
ClCG09G002660 Citrullus lanatus HOM05D003773 ORTHO05D004377 5.3e-31 138.3 147 46.9
Glyma.05G153500 Glycine max HOM05D003773 ORTHO05D004377 5.3e-31 138.3 90 70.0
Ca_17973_v3 Cicer arietinum L. HOM05D003773 ORTHO05D004377 6.9e-31 137.9 90 71.1
TWI39G0383 Tripterygium wilfordii HOM05D003773 ORTHO05D004377 6.9e-31 137.9 90 71.1
Prupe.5G225800 Prunus persica HOM05D003773 ORTHO05D004377 1.2e-30 137.1 108 58.3
Solyc12g040810.2 Solanum lycopersicum HOM05D003773 ORTHO05D004377 1.2e-30 137.1 93 67.7
Sopen12g020600 Solanum pennellii HOM05D003773 ORTHO05D004377 1.2e-30 137.1 93 67.7
EL10Ac9g21128 Beta vulgaris HOM05D003773 ORTHO05D004377 1.5e-30 136.7 90 71.1
CAN.G843.44 Capsicum annuum HOM05D003773 ORTHO05D004377 2.0e-30 136.3 93 66.7
Eucgr.G02268 Eucalyptus grandis HOM05D003773 ORTHO05D004377 2.6e-30 136.0 92 67.4
Psat7g074520 Pisum sativum HOM05D003773 ORTHO05D004377 2.6e-30 136.0 90 68.9
Lj4g0004931 Lotus japonicus HOM05D003773 ORTHO05D004377 5.8e-30 134.8 90 66.7
Peaxi162Scf00571g00532 Petunia axillaris HOM05D003773 ORTHO05D004377 5.8e-30 134.8 92 65.2
Prupe.3G223100 Prunus persica HOM05D003773 ORTHO05D004377 5.8e-30 134.8 92 66.3
Ciclev10015999m.g Citrus clementina HOM05D003773 ORTHO05D004377 7.6e-30 134.4 93 66.7
TPR.G11959 Trifolium pratense HOM05D003773 ORTHO05D004377 7.6e-30 134.4 92 66.3
ATR0723G050 Amborella trichopoda HOM05D003773 ORTHO05D004377 1.7e-29 133.3 94 63.8
CSS0007239 Camellia sinensis var. sinensis HOM05D003773 ORTHO05D004377 1.7e-29 133.3 95 62.1
CANSAT11G0557 Cannabis sativa HOM05D003773 ORTHO05D004377 1.7e-29 133.3 89 66.3
Lsat_1_v5_gn_6_29461 Lactuca sativa HOM05D003773 ORTHO05D004377 1.7e-29 133.3 105 57.1
Eucgr.G02437 Eucalyptus grandis HOM05D003773 ORTHO05D004377 2.2e-29 132.9 89 67.4
MELO3C023397.2 Cucumis melo HOM05D003773 ORTHO05D004377 3.8e-29 132.1 92 64.1
Lj4g0017678 Lotus japonicus HOM05D003773 ORTHO05D004377 3.8e-29 132.1 90 65.6
Migut.A01113 Erythranthe guttata HOM05D003773 ORTHO05D004377 4.9e-29 131.7 92 66.3
Nn7g36520 Nelumbo nucifera HOM05D003773 ORTHO05D004377 4.9e-29 131.7 90 65.6
PSO017G1854 Papaver somniferum HOM05D003773 ORTHO05D004377 4.9e-29 131.7 90 65.6
PSO339G0310 Papaver somniferum HOM05D003773 ORTHO05D004377 4.9e-29 131.7 90 65.6
CsaV3_7G032670 Cucumis sativus L. HOM05D003773 ORTHO05D004377 6.4e-29 131.3 90 65.6
Thecc.10G119200 Theobroma cacao HOM05D003773 ORTHO05D004377 6.4e-29 131.3 90 67.8
MSTRG.22069 Avicennia marina HOM05D003773 ORTHO05D004377 8.4e-29 131.0 92 65.2
Duzib052G0913 Durio zibethinus HOM05D003773 ORTHO05D004377 8.4e-29 131.0 90 65.6
Medtr1g111160 Medicago truncatula HOM05D003773 ORTHO05D004377 8.4e-29 131.0 89 67.4
GSVIVG01019372001 Vitis vinifera HOM05D003773 ORTHO05D004377 8.4e-29 131.0 94 63.8
CSS0038312 Camellia sinensis var. sinensis HOM05D003773 ORTHO05D004377 1.4e-28 130.2 94 61.7
Cc04_g06080 Coffea canephora HOM05D003773 ORTHO05D004377 1.9e-28 129.8 89 66.3
VMungo0251G2733 Vigna mungo HOM05D003773 ORTHO05D004377 1.9e-28 129.8 90 64.4
arahy.Tifrunner.gnm1.ann1.E2NQKT Arachis hypogaea HOM05D003773 ORTHO05D004377 2.4e-28 129.4 90 63.3
CiPaw.02G104400 Carya illinoinensis HOM05D003773 ORTHO05D004377 3.2e-28 129.0 92 63.0
QL05p004180 Quercus lobata HOM05D003773 ORTHO05D004377 3.2e-28 129.0 117 54.7
Eucgr.G01406 Eucalyptus grandis HOM05D003773 ORTHO05D004377 4.2e-28 128.6 92 64.1
PGR142G1397 Punica granatum HOM05D003773 ORTHO05D004377 4.2e-28 128.6 89 64.0
RhsimUnG0179500 Rhododendron simsii HOM05D003773 ORTHO05D004377 4.2e-28 128.6 93 61.3
RhsimUnG0179700 Rhododendron simsii HOM05D003773 ORTHO05D004377 4.2e-28 128.6 93 61.3
RhsimUnG0210700 Rhododendron simsii HOM05D003773 ORTHO05D004377 4.2e-28 128.6 93 61.3
BolC9t59300H Brassica oleracea HOM05D003773 ORTHO05D004377 5.4e-28 128.3 90 62.2
Thhalv10021168m.g Eutrema salsugineum HOM05D003773 ORTHO05D004377 5.4e-28 128.3 95 62.1
Potri.013G012500 Populus trichocarpa HOM05D003773 ORTHO05D004377 5.4e-28 128.3 92 62.0
SGA_v2.0_scaffold227G43195 Striga asiatica HOM05D003773 ORTHO05D004377 5.4e-28 128.3 92 62.0
Aa31LG3G15020 Aethionema arabicum HOM05D003773 ORTHO05D004377 7.1e-28 127.9 90 63.3
Aqoxy7G03759 Aquilegia oxysepala HOM05D003773 ORTHO05D004377 7.1e-28 127.9 90 64.4
CDE02G2566 Ceratophyllum demersum HOM05D003773 ORTHO05D004377 7.1e-28 127.9 92 65.2
TAR626G0538 Trochodendron aralioides HOM05D003773 ORTHO05D004377 9.3e-28 127.5 90 62.2
Dinv09299 Davidia involucrata HOM05D003773 ORTHO05D004377 1.2e-27 127.1 90 62.2
Aqoxy5G00933 Aquilegia oxysepala HOM05D003773 ORTHO05D004377 1.6e-27 126.7 92 63.0
BcaNung06880 Brassica carinata HOM05D003773 ORTHO05D004377 1.6e-27 126.7 90 63.3
C09p64680 Brassica napus HOM05D003773 ORTHO05D004377 1.6e-27 126.7 90 63.3
Cfa004598 Carpinus fangiana HOM05D003773 ORTHO05D004377 1.6e-27 126.7 92 60.9
CARHR200910 Cardamine hirsuta HOM05D003773 ORTHO05D004377 2.1e-27 126.3 89 64.0
CDE05G0639 Ceratophyllum demersum HOM05D003773 ORTHO05D004377 2.1e-27 126.3 92 64.1
Thhalv10014116m.g Eutrema salsugineum HOM05D003773 ORTHO05D004377 2.1e-27 126.3 90 62.2
SHI10290 Sapria himalayana HOM05D003773 ORTHO05D004377 2.1e-27 126.3 101 58.4
Atru.chr7.1713 Acer truncatum HOM05D003773 ORTHO05D004377 2.7e-27 125.9 90 64.4
DCAR_023465 Daucus carota HOM05D003773 ORTHO05D004377 2.7e-27 125.9 91 59.3
FAN01G0361 Fragaria x ananassa HOM05D009091 ORTHO05D004377 2.7e-27 125.9 97 58.8
Lalb_Chr07g0186751 Lupinus albus HOM05D003773 ORTHO05D004377 2.7e-27 125.9 89 60.7
GSVIVG01000415001 Vitis vinifera HOM05D003773 ORTHO05D004377 2.7e-27 125.9 90 62.2
Actinidia31174 Actinidia chinensis HOM05D003773 ORTHO05D004377 3.5e-27 125.6 90 61.1
AL6G23000 Arabidopsis lyrata HOM05D003773 ORTHO05D004377 3.5e-27 125.6 90 62.2
MSTRG.21385 Avicennia marina HOM05D003773 ORTHO05D004377 3.5e-27 125.6 92 63.0
Sp3g10300 Schrenkiella parvula HOM05D003773 ORTHO05D004377 3.5e-27 125.6 93 60.2
Gohir.A03G162800 Gossypium hirsutum HOM05D003773 ORTHO05D004377 6.0e-27 124.8 90 62.2
Gohir.D02G186100 Gossypium hirsutum HOM05D003773 ORTHO05D004377 6.0e-27 124.8 89 62.9
Gorai.005G208400 Gossypium raimondii HOM05D003773 ORTHO05D004377 6.0e-27 124.8 89 62.9
Phvul.002G235200 Phaseolus vulgaris HOM05D003773 ORTHO05D004377 6.0e-27 124.8 89 62.9
AT5G12210 Arabidopsis thaliana HOM05D003773 ORTHO05D004377 7.9e-27 124.4 90 62.2
FvH4_6g43850 Fragaria vesca HOM05D003773 ORTHO05D004377 7.9e-27 124.4 94 60.6
Cpa.g.sc50.7 Carica papaya HOM05D003773 ORTHO05D004377 1.0e-26 124.0 89 61.8
Hma1.2p1_1650F.1_g295665 Hydrangea macrophylla HOM05D003773 ORTHO05D004377 1.3e-26 123.6 90 63.3
MD14G1230700 Malus domestica HOM05D003773 ORTHO05D004377 1.3e-26 123.6 103 55.3
Carub.0006s1071 Capsella rubella HOM05D003773 ORTHO05D004377 2.3e-26 122.9 90 61.1
ECA233G0965 Erigeron canadensis HOM05D003773 ORTHO05D004377 2.3e-26 122.9 97 56.7
Hma1.2p1_1872F.1_g306150 Hydrangea macrophylla HOM05D003773 ORTHO05D004377 3.0e-26 122.5 90 62.2
BcaB01g05426 Brassica carinata HOM05D003773 ORTHO05D004377 3.9e-26 122.1 89 61.8
MBI02_g12519_MAGBIO Magnolia biondii HOM05D003773 ORTHO05D004377 3.9e-26 122.1 104 56.7
FAN05G4396 Fragaria x ananassa HOM05D003773 ORTHO05D004377 5.1e-26 121.7 94 58.5
Manes.04G060700 Manihot esculenta HOM05D003773 ORTHO05D004377 5.1e-26 121.7 91 61.5
THA.LOC104799137 Tarenaya hassleriana HOM05D003773 ORTHO05D004377 5.1e-26 121.7 92 62.0
FAN03G1906 Fragaria x ananassa HOM05D003773 ORTHO05D004377 6.7e-26 121.3 96 58.3
RcHm_v2.0_Chr2g0160601 Rosa chinensis HOM05D003773 ORTHO05D004377 6.7e-26 121.3 92 60.9
FAN14G4120 Fragaria x ananassa HOM05D003773 ORTHO05D004377 8.7e-26 120.9 94 59.6
TAR624G0440 Trochodendron aralioides HOM05D003773 ORTHO05D004377 1.1e-25 120.6 90 58.9
Os03g0193700 Oryza sativa ssp. japonica HOM05D003773 ORTHO05D004377 1.5e-25 120.2 96 65.6
ClCG02G001540 Citrullus lanatus HOM05D003773 ORTHO05D004377 3.3e-25 119.0 89 58.4
FvH4_7g02690 Fragaria vesca HOM05D003773 ORTHO05D004377 3.3e-25 119.0 92 59.8
FAN06G3388 Fragaria x ananassa HOM05D003773 ORTHO05D004377 3.3e-25 119.0 92 59.8
BcaB01g05420 Brassica carinata HOM05D003773 ORTHO05D004377 5.6e-25 118.2 104 54.8
COL.COLO4_20947 Corchorus olitorius HOM05D003773 ORTHO05D004377 5.6e-25 118.2 88 60.2
Hund05549 Selenicereus undatus HOM05D003773 ORTHO05D004377 5.6e-25 118.2 78 70.5
BcaB01g05423 Brassica carinata HOM05D003773 ORTHO05D004377 7.4e-25 117.9 106 54.7
SGA_v2.0_scaffold220G42596 Striga asiatica HOM05D003773 ORTHO05D004377 7.4e-25 117.9 85 61.2
Ah.12g059510 Amaranthus hybridus HOM05D003773 ORTHO05D004377 1.3e-24 117.1 117 47.9
AL3G23680 Arabidopsis lyrata HOM05D003773 ORTHO05D004377 1.6e-24 116.7 111 54.1
FAN10G4129 Fragaria x ananassa HOM05D003773 ORTHO05D004377 1.6e-24 116.7 92 58.7
Sp6g31430 Schrenkiella parvula HOM05D003773 ORTHO05D004377 1.6e-24 116.7 89 59.6
AT3G12070 Arabidopsis thaliana HOM05D003773 ORTHO05D004377 2.1e-24 116.3 94 58.5
Nitab4.5_0002046g0050 Nicotiana tabacum HOM05D003773 ORTHO05D004377 2.1e-24 116.3 78 66.7
Peaxi162Scf00314g00337 Petunia axillaris HOM05D003773 ORTHO05D004377 3.7e-24 115.5 78 66.7
AagrBONN_evm.TU.Sc2ySwM_117.1003 Anthoceros agrestis HOM05D003773 ORTHO05D004377 6.2e-24 114.8 107 49.5
Mapoly0074s0013 Marchantia polymorpha HOM05D003773 ORTHO05D004377 6.2e-24 114.8 91 54.9
Eucgr.K00882 Eucalyptus grandis HOM05D003773 ORTHO05D004377 8.1e-24 114.4 90 55.6
SMO340G0057 Selaginella moellendorffii HOM05D003773 ORTHO05D004377 1.1e-23 114.0 99 52.5
Eucgr.G01411 Eucalyptus grandis HOM05D003773 ORTHO05D004377 1.4e-23 113.6 117 45.3
Pp3c1_39910 Physcomitrium patens HOM05D003773 ORTHO05D004377 1.8e-23 113.2 97 53.6
C03p06330 Brassica napus HOM05D003773 ORTHO05D004377 2.4e-23 112.8 81 59.3
BolC3t13141H Brassica oleracea HOM05D003773 ORTHO05D004377 2.4e-23 112.8 81 59.3
Sed0008204 Sechium edule HOM05D003773 ORTHO05D004377 2.4e-23 112.8 79 62.0
Prupe.2G111600 Prunus persica HOM05D003773 ORTHO05D004377 4.0e-23 112.1 110 51.8
MD09G1102700 Malus domestica HOM05D003773 ORTHO05D004377 1.5e-22 110.2 77 61.0
Nitab4.5_0001264g0100 Nicotiana tabacum HOM05D003773 ORTHO05D004377 2.0e-22 109.8 78 64.1
CBR_g17690 Chara braunii HOM05D003773 ORTHO05D004377 4.5e-22 108.6 104 44.2
Pp3c14_22730 Physcomitrium patens HOM05D003773 ORTHO05D004377 7.6e-22 107.8 97 52.6
SEGI_14663 Sequoiadendron giganteum HOM05D003773 ORTHO05D004377 2.9e-21 105.9 114 46.5
RcHm_v2.0_Chr7g0226631 Rosa chinensis HOM05D003773 ORTHO05D004377 1.1e-20 104.0 77 61.0
MD06G1221400 Malus domestica HOM05D003773 ORTHO05D004377 1.4e-20 103.6 83 59.0
unitig_8.g4952 Utricularia gibba HOM05D003773 ORTHO05D004377 3.2e-20 102.4 62 72.6
HanXRQChr02g0056321 Helianthus annuus HOM05D003773 ORTHO05D004377 5.5e-20 101.7 77 59.7
Cfa014475 Carpinus fangiana HOM05D003773 ORTHO05D004377 2.1e-19 99.8 67 64.2
MCO02G125 Micromonas commoda HOM05D003773 ORTHO05D004377 2.7e-19 99.4 88 50.0
HanXRQChr02g0051831 Helianthus annuus HOM05D003773 ORTHO05D004377 1.8e-18 96.7 68 63.2
MBI02_g15890_MAGBIO Magnolia biondii HOM05D003773 ORTHO05D004377 6.7e-18 94.7 108 47.2
RcHm_v2.0_Chr5g0048191 Rosa chinensis HOM05D003773 ORTHO05D004377 1.9e-17 93.2 67 65.7
Carub.0003s1141 Capsella rubella HOM05D003773 ORTHO05D004377 2.5e-17 92.8 88 51.1
Nn5g31474 Nelumbo nucifera HOM05D003773 ORTHO05D004377 2.5e-17 92.8 64 60.9
CSS0029091 Camellia sinensis var. sinensis HOM05D003773 ORTHO05D004377 3.1e-15 85.9 111 40.5
Eucgr.G01407 Eucalyptus grandis HOM05D003773 ORTHO05D004377 2.6e-14 82.8 94 45.7
Haze_26189 Corylus avellana HOM05D003773 ORTHO05D004377 7.6e-14 81.3 110 39.1
PRCOL_00001116 Prasinoderma coloniale HOM05D003773 ORTHO05D004377 6.5e-13 78.2 97 39.2
MELO3C018787.2 Cucumis melo HOM05D003773 ORTHO05D004377 8.4e-13 77.8 90 43.3
SalBow3G2878 Salvia bowleyana HOM05D006351 ORTHO05D007796 8.4e-13 77.8 59 59.3
Cfa027002 Carpinus fangiana HOM05D003773 ORTHO05D123979 1.1e-12 77.4 113 33.6
Cre01.g053500 Chlamydomonas reinhardtii HOM05D003773 ORTHO05D004377 7.1e-12 74.7 101 35.6
AUR62041265 Chenopodium quinoa HOM05D003773 ORTHO05D004377 2.7e-11 72.8 105 39.0
Pp3c2_3550 Physcomitrium patens HOM05D003773 ORTHO05D004377 1.0e-10 70.9 79 44.3
SEGI_16055 Sequoiadendron giganteum HOM05D003773 ORTHO05D004377 8.7e-10 67.8 60 46.7
Lj6C712G2 Lonicera japonica HOM05D003773 ORTHO05D004377 1.2e-06 57.4 40 57.5
DCAR_026891 Daucus carota HOM05D003773 ORTHO05D004377 2.6e-06 56.2 50 48.0


User provided reference genes

Program Settings