Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0522000 Oryza sativa ssp. japonica HOM05D005312 ORTHO05D006459 1.4e-200 703.0 413 100.0
Zm00001eb170350 Zea mays HOM05D005312 ORTHO05D006459 1.0e-174 617.1 371 85.4
MBI07_g40342_MAGBIO Magnolia biondii HOM05D005312 ORTHO05D006459 4.9e-121 438.7 381 63.8
Nn4g22171 Nelumbo nucifera HOM05D005312 ORTHO05D006459 4.1e-112 409.1 382 58.4
TAR629G1483 Trochodendron aralioides HOM05D005312 ORTHO05D006459 9.2e-112 407.9 383 59.8
Hma1.2p1_0868F.1_g230570 Hydrangea macrophylla HOM05D005312 ORTHO05D006459 1.6e-108 397.1 380 57.6
Thecc.04G046000 Theobroma cacao HOM05D005312 ORTHO05D006459 2.8e-108 396.4 386 55.4
TAR371G0255 Trochodendron aralioides HOM05D005312 ORTHO05D006459 1.8e-107 393.7 387 57.1
vmacro22240 Vaccinium macrocarpon HOM05D005312 ORTHO05D006459 8.9e-107 391.3 384 57.3
Atru.chr6.2642 Acer truncatum HOM05D005312 ORTHO05D006459 1.5e-106 390.6 382 57.1
Dinv33289 Davidia involucrata HOM05D005312 ORTHO05D006459 1.5e-106 390.6 382 58.1
Duzib147G0684 Durio zibethinus HOM05D005312 ORTHO05D006459 1.5e-106 390.6 386 56.7
Glyma.02G066000 Glycine max HOM05D005312 ORTHO05D006459 2.0e-106 390.2 382 56.0
Lalb_Chr02g0156821 Lupinus albus HOM05D005312 ORTHO05D006459 2.6e-106 389.8 383 56.9
Prupe.3G312600 Prunus persica HOM05D005312 ORTHO05D006459 3.4e-106 389.4 388 56.4
CDE06G1073 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 4.4e-106 389.0 372 55.6
CSS0036880 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 5.8e-106 388.7 385 57.4
Ciclev10015374m.g Citrus clementina HOM05D005312 ORTHO05D006459 5.8e-106 388.7 383 55.6
Rhsim10G0001700 Rhododendron simsii HOM05D005312 ORTHO05D006459 5.8e-106 388.7 383 57.2
Glyma.16G146900 Glycine max HOM05D005312 ORTHO05D006459 1.3e-105 387.5 387 55.8
Duzib264G0870 Durio zibethinus HOM05D005312 ORTHO05D006459 1.7e-105 387.1 386 55.4
Lalb_Chr06g0173771 Lupinus albus HOM05D005312 ORTHO05D006459 2.9e-105 386.3 381 55.4
Lj2g0017210 Lotus japonicus HOM05D005312 ORTHO05D006459 6.4e-105 385.2 381 55.1
Cc07_g01210 Coffea canephora HOM05D005312 ORTHO05D006459 8.3e-105 384.8 391 54.5
CANSAT64G1152 Cannabis sativa HOM05D005312 ORTHO05D006459 1.1e-104 384.4 388 55.2
RcHm_v2.0_Chr2g0176401 Rosa chinensis HOM05D005312 ORTHO05D006459 1.1e-104 384.4 381 57.2
CDE02G3855 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 1.4e-104 384.0 371 55.3
CiPaw.03G003000 Carya illinoinensis HOM05D005312 ORTHO05D006459 2.4e-104 383.3 383 55.4
Duzib187G0698 Durio zibethinus HOM05D005312 ORTHO05D006459 2.4e-104 383.3 385 54.3
Ah.02g128920 Amaranthus hybridus HOM05D005312 ORTHO05D006459 3.2e-104 382.9 393 53.2
arahy.Tifrunner.gnm1.ann1.ZY683S Arachis hypogaea HOM05D005312 ORTHO05D006459 3.2e-104 382.9 403 53.3
COL.COLO4_13349 Corchorus olitorius HOM05D005312 ORTHO05D006459 4.1e-104 382.5 387 55.3
FAN02G3987 Fragaria x ananassa HOM05D005312 ORTHO05D006459 4.1e-104 382.5 384 56.2
FAN05G1132 Fragaria x ananassa HOM05D005312 ORTHO05D006459 4.1e-104 382.5 385 56.4
Eucgr.G01940 Eucalyptus grandis HOM05D005312 ORTHO05D006459 1.2e-103 380.9 388 54.6
Sabra14G0109800 Salix brachista HOM05D005312 ORTHO05D006459 1.2e-103 380.9 373 55.0
MD17G1007700 Malus domestica HOM05D005312 ORTHO05D006459 1.6e-103 380.6 385 56.1
FvH4_6g54210 Fragaria vesca HOM05D005312 ORTHO05D006459 2.1e-103 380.2 382 56.5
FAN09G1737 Fragaria x ananassa HOM05D005312 ORTHO05D006459 2.1e-103 380.2 382 56.5
Phvul.004G070300 Phaseolus vulgaris HOM05D005312 ORTHO05D006459 2.7e-103 379.8 385 54.8
PGSC0003DMG400020194 Solanum tuberosum HOM05D005312 ORTHO05D006459 3.5e-103 379.4 382 55.5
SalBow4G2016 Salvia bowleyana HOM05D005312 ORTHO05D006459 4.6e-103 379.0 390 54.1
CAN.G473.156 Capsicum annuum HOM05D005312 ORTHO05D006459 6.0e-103 378.6 386 55.2
FAN14G0182 Fragaria x ananassa HOM05D005312 ORTHO05D006459 6.0e-103 378.6 382 56.3
Actinidia37728 Actinidia chinensis HOM05D005312 ORTHO05D006459 7.8e-103 378.3 381 57.0
Cfa007172 Carpinus fangiana HOM05D005312 ORTHO05D006459 1.0e-102 377.9 383 55.4
Sed0007531 Sechium edule HOM05D005312 ORTHO05D006459 1.0e-102 377.9 381 56.2
Aqoxy5G03173 Aquilegia oxysepala HOM05D005312 ORTHO05D006459 1.7e-102 377.1 388 56.2
MSTRG.3045 Avicennia marina HOM05D005312 ORTHO05D006459 1.7e-102 377.1 386 53.9
Cpa.g.sc70.78 Carica papaya HOM05D005312 ORTHO05D006459 3.0e-102 376.3 389 56.0
arahy.Tifrunner.gnm1.ann1.JN3C7K Arachis hypogaea HOM05D005312 ORTHO05D006459 3.9e-102 375.9 407 54.8
MD09G1004000 Malus domestica HOM05D005312 ORTHO05D006459 5.1e-102 375.6 385 55.6
Aa31LG2G5770 Aethionema arabicum HOM05D005312 ORTHO05D006459 6.6e-102 375.2 381 52.8
QL02p069878 Quercus lobata HOM05D005312 ORTHO05D006459 6.6e-102 375.2 385 53.8
Lj7A616T62 Lonicera japonica HOM05D005312 ORTHO05D006459 1.1e-101 374.4 384 54.7
TPR.G36663 Trifolium pratense HOM05D005312 ORTHO05D006459 1.5e-101 374.0 394 54.1
ClCG05G012720 Citrullus lanatus HOM05D005312 ORTHO05D006459 1.9e-101 373.6 381 55.1
Potri.014G145900 Populus trichocarpa HOM05D005312 ORTHO05D006459 1.9e-101 373.6 373 53.9
Peaxi162Scf00420g00087 Petunia axillaris HOM05D005312 ORTHO05D006459 3.3e-101 372.9 384 54.9
Sopen02g039150 Solanum pennellii HOM05D005312 ORTHO05D006459 5.6e-101 372.1 382 56.0
MELO3C014806.2 Cucumis melo HOM05D005312 ORTHO05D006459 7.3e-101 371.7 381 54.9
Solyc02g094480.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 7.3e-101 371.7 381 55.9
TWI32G0425 Tripterygium wilfordii HOM05D005312 ORTHO05D006459 7.3e-101 371.7 383 54.3
Gohir.D07G239300 Gossypium hirsutum HOM05D005312 ORTHO05D006459 9.5e-101 371.3 386 53.9
Gorai.001G275400 Gossypium raimondii HOM05D005312 ORTHO05D006459 9.5e-101 371.3 386 53.9
PSO017G1316 Papaver somniferum HOM05D005312 ORTHO05D006459 9.5e-101 371.3 387 56.1
EL10As7g23753 Beta vulgaris HOM05D005312 ORTHO05D006459 2.1e-100 370.2 396 52.3
Gohir.A07G232100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 2.1e-100 370.2 386 54.1
PSO478G3188 Papaver somniferum HOM05D005312 ORTHO05D006459 2.8e-100 369.8 387 55.8
AUR62041074 Chenopodium quinoa HOM05D005312 ORTHO05D006459 3.6e-100 369.4 383 53.0
Sc03g0004830 Simmondsia chinensis HOM05D005312 ORTHO05D006459 8.1e-100 368.2 377 55.4
Manes.11G077500 Manihot esculenta HOM05D005312 ORTHO05D006459 1.4e-99 367.5 382 56.0
Manes.04G092300 Manihot esculenta HOM05D005312 ORTHO05D006459 1.8e-99 367.1 387 52.7
THA.LOC104823996 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 1.5e-98 364.0 385 52.7
THA.LOC104805304 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 2.6e-98 363.2 379 53.8
Psat1g097480 Pisum sativum HOM05D005312 ORTHO05D006459 3.4e-98 362.8 384 53.1
Oeu039797.1 Olea europaea HOM05D005312 ORTHO05D006459 7.6e-98 361.7 387 55.8
Migut.F00017 Erythranthe guttata HOM05D005312 ORTHO05D006459 2.2e-97 360.1 390 51.8
DCAR_002973 Daucus carota HOM05D005312 ORTHO05D006459 2.9e-97 359.8 403 52.1
Sabra02G0180200 Salix brachista HOM05D005312 ORTHO05D006459 6.4e-97 358.6 372 55.6
BraA02t08484Z Brassica rapa HOM05D005312 ORTHO05D006459 8.4e-97 358.2 369 54.2
Medtr6g033275 Medicago truncatula HOM05D005312 ORTHO05D006459 1.1e-96 357.8 386 52.8
Carub.0005s0483 Capsella rubella HOM05D005312 ORTHO05D006459 1.9e-96 357.1 371 53.4
Potri.002G236600 Populus trichocarpa HOM05D005312 ORTHO05D006459 2.4e-96 356.7 372 53.8
C02p53340 Brassica napus HOM05D005312 ORTHO05D006459 3.2e-96 356.3 369 54.5
A02p34780 Brassica napus HOM05D005312 ORTHO05D006459 4.1e-96 355.9 369 53.9
SGA_v2.0_scaffold44G16946 Striga asiatica HOM05D005312 ORTHO05D006459 5.4e-96 355.5 385 51.2
BcaC03g17388 Brassica carinata HOM05D005312 ORTHO05D006459 2.1e-95 353.6 369 53.9
BolC2t11405H Brassica oleracea HOM05D005312 ORTHO05D006459 2.1e-95 353.6 369 53.9
AL5G15650 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 4.6e-95 352.4 370 51.9
PGR083G1093 Punica granatum HOM05D005312 ORTHO05D006459 1.3e-94 350.9 377 52.5
ATR0582G189 Amborella trichopoda HOM05D005312 ORTHO05D006459 2.3e-94 350.1 412 50.5
BcaB07g30210 Brassica carinata HOM05D005312 ORTHO05D006459 2.3e-94 350.1 372 53.5
Thhalv10004350m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 2.3e-94 350.1 371 53.9
Sp2g15910 Schrenkiella parvula HOM05D005312 ORTHO05D006459 2.3e-94 350.1 373 53.6
HanXRQChr14g0451381 Helianthus annuus HOM05D005312 ORTHO05D006459 6.6e-94 348.6 372 51.6
AT3G26780 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 5.6e-93 345.5 371 51.5
CARHR013180 Cardamine hirsuta HOM05D005312 ORTHO05D006459 9.6e-93 344.7 373 50.9
Lsat_1_v5_gn_2_94460 Lactuca sativa HOM05D005312 ORTHO05D006459 3.6e-92 342.8 370 52.4
AT1G12850 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 4.7e-92 342.4 373 51.2
Aa31LG1G1910 Aethionema arabicum HOM05D005312 ORTHO05D006459 1.4e-91 340.9 377 50.4
AUR62037835 Chenopodium quinoa HOM05D005312 ORTHO05D006459 1.8e-91 340.5 310 57.7
Carub.0001s1260 Capsella rubella HOM05D005312 ORTHO05D006459 4.0e-91 339.3 372 50.5
AL1G24500 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 5.2e-91 339.0 372 50.8
C08p15720 Brassica napus HOM05D005312 ORTHO05D006459 4.4e-90 335.9 367 50.7
BolC8t49199H Brassica oleracea HOM05D005312 ORTHO05D006459 5.8e-90 335.5 367 50.7
Sp1g11430 Schrenkiella parvula HOM05D005312 ORTHO05D006459 3.8e-89 332.8 370 48.9
Nitab4.5_0025697g0010 Nicotiana tabacum HOM05D005312 ORTHO05D006459 2.4e-88 330.1 360 53.1
CARHR147850 Cardamine hirsuta HOM05D005312 ORTHO05D006459 2.1e-87 327.0 368 48.6
CSS0020784 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 2.7e-87 326.6 357 52.9
BcaB03g13161 Brassica carinata HOM05D005312 ORTHO05D006459 3.5e-87 326.2 371 49.6
A08p32570 Brassica napus HOM05D005312 ORTHO05D006459 6.0e-87 325.5 368 50.0
BraA08t35181Z Brassica rapa HOM05D005312 ORTHO05D006459 1.1e-85 321.2 368 50.3
Oeu003422.1 Olea europaea HOM05D005312 ORTHO05D006459 3.3e-85 319.7 389 48.8
GSVIVG01033003001 Vitis vinifera HOM05D005312 ORTHO05D006459 3.3e-85 319.7 300 57.7
Thhalv10007881m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 1.6e-84 317.4 372 49.5
SEGI_01379 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 6.2e-84 315.5 394 46.7
Gohir.D10G081000 Gossypium hirsutum HOM05D005312 ORTHO05D006459 1.9e-80 303.9 377 46.4
Gorai.011G088100 Gossypium raimondii HOM05D005312 ORTHO05D006459 7.1e-80 302.0 376 46.3
Gohir.A10G070100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 2.1e-79 300.4 376 46.5
HPP92_008243 Vanilla planifolia HOM05D005312 ORTHO05D006459 1.5e-77 294.3 227 66.1
Nitab4.5_0002172g0150 Nicotiana tabacum HOM05D005312 ORTHO05D006459 1.3e-76 291.2 395 46.6
ECA238G3491 Erigeron canadensis HOM05D000001 ORTHO05D000003 1.6e-71 274.2 293 52.9
VMungo0464G0174 Vigna mungo HOM05D005312 ORTHO05D006459 3.5e-63 246.5 247 53.4
Pp3c21_20660 Physcomitrium patens HOM05D005312 ORTHO05D006459 1.9e-56 224.2 393 36.1
SEGI_20575 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 5.5e-56 222.6 313 41.5
Ca_26608_v3 Cicer arietinum L. HOM05D005312 ORTHO05D006459 9.3e-56 221.9 431 37.1
unitig_37.g12041 Utricularia gibba HOM05D005312 ORTHO05D006459 1.7e-49 201.1 215 48.8
ECA246G2144 Erigeron canadensis HOM05D005312 ORTHO05D006459 8.5e-49 198.7 220 50.9
Nn3g16305 Nelumbo nucifera HOM05D005312 ORTHO05D006459 3.7e-44 183.3 205 53.2
CBR_g2835 Chara braunii HOM05D005312 ORTHO05D006459 1.9e-40 171.0 356 33.7
AagrBONN_evm.TU.Sc2ySwM_344.1953 Anthoceros agrestis HOM05D005312 ORTHO05D006459 1.8e-38 164.5 293 35.2
Actinidia19557 Actinidia chinensis HOM05D005312 ORTHO05D006459 2.0e-34 151.0 155 56.8
VMungo0464G1790 Vigna mungo HOM05D005312 ORTHO05D006459 3.6e-31 140.2 148 56.8
unitig_37.g12040 Utricularia gibba HOM05D005312 ORTHO05D006459 2.6e-29 134.0 147 54.4
CSS0007293 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 9.7e-29 132.1 145 54.5
Haze_14938 Corylus avellana HOM05D005312 ORTHO05D006459 4.8e-28 129.8 147 53.1
SGA_v2.0_scaffold173G39196 Striga asiatica HOM05D005312 ORTHO05D006459 8.3e-12 75.9 107 45.8
SEGI_29311 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 9.2e-11 72.4 76 52.6
PRCOL_00002808 Prasinoderma coloniale HOM05D005312 ORTHO05D006459 7.3e-08 62.8 320 24.4


User provided reference genes

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