Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0519500 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D300109 0.0e+00 1815.8 898 100.0
Os11g0518900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 1.1e-106 392.1 819 32.8
Os11g0513900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 2.6e-74 284.6 774 28.6
Os11g0517800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D299849 7.5e-34 150.2 451 28.4
Os11g0513500 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D294786 3.0e-30 138.3 172 42.4
Os11g0516800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D298044 7.0e-24 117.1 160 43.1
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 1.1e-16 93.2 352 27.0
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 1.9e-16 92.4 313 26.5
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 1.2e-15 89.7 330 25.8
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 7.8e-15 87.0 344 25.9
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 1.7e-14 85.9 305 27.5
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 2.3e-14 85.5 343 26.2
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 2.3e-14 85.5 343 25.7
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 2.3e-14 85.5 311 26.0
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 3.0e-14 85.1 305 26.9
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 3.9e-14 84.7 314 25.2
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 5.1e-14 84.3 302 26.8
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 8.6e-14 83.6 314 27.1
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 1.9e-13 82.4 328 24.7
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 1.9e-13 82.4 345 24.1
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 4.3e-13 81.3 335 25.1
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 4.3e-13 81.3 314 25.8
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 4.3e-13 81.3 314 26.4
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 4.3e-13 81.3 316 27.2
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 9.5e-13 80.1 346 24.3
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 1.2e-12 79.7 319 24.5
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 2.8e-12 78.6 352 24.1
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 4.7e-12 77.8 343 24.5
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 6.2e-12 77.4 317 24.0
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 8.1e-12 77.0 340 24.7
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 1.1e-11 76.6 317 24.9
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 1.1e-11 76.6 335 25.1
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 1.1e-11 76.6 335 23.0
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 1.4e-11 76.3 335 23.3
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 2.4e-11 75.5 296 26.0
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 3.1e-11 75.1 269 26.8
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 5.2e-11 74.3 343 22.7
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 5.2e-11 74.3 319 23.8
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 5.2e-11 74.3 318 24.8
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 5.2e-11 74.3 339 25.7
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 6.8e-11 73.9 318 24.2
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 1.2e-10 73.2 317 24.9
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 1.5e-10 72.8 317 24.0
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 1.5e-10 72.8 317 24.0
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 1.5e-10 72.8 318 24.2
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 2.0e-10 72.4 316 24.1
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 2.6e-10 72.0 317 24.6
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 2.6e-10 72.0 343 23.3
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 3.4e-10 71.6 343 23.3
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 3.4e-10 71.6 343 23.3
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 3.4e-10 71.6 343 23.3
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 5.8e-10 70.9 317 23.0
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 7.6e-10 70.5 318 24.2
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 1.3e-09 69.7 337 24.0
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 1.3e-09 69.7 343 23.0
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 1.7e-09 69.3 337 23.7
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 1.7e-09 69.3 154 32.5
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 3.8e-09 68.2 343 22.7
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 3.8e-09 68.2 343 22.7
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 3.8e-09 68.2 318 23.3
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 4.9e-09 67.8 338 24.0
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 6.4e-09 67.4 287 24.0
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 8.4e-09 67.0 323 26.3
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 8.4e-09 67.0 338 23.1
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 8.4e-09 67.0 318 23.6
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 1.4e-08 66.2 221 26.2
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 1.4e-08 66.2 271 24.7
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 1.9e-08 65.9 318 23.3
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 2.4e-08 65.5 268 26.1
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 3.2e-08 65.1 318 23.3
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 3.2e-08 65.1 318 23.0
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 5.4e-08 64.3 318 23.9
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 5.4e-08 64.3 150 30.7
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 7.1e-08 63.9 336 22.9
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 7.1e-08 63.9 218 25.2
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 9.2e-08 63.5 318 23.0
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 1.6e-07 62.8 319 23.8
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 2.1e-07 62.4 246 24.8
Sopen00g006590 Solanum pennellii HOM05D004384 ORTHO05D005797 2.7e-07 62.0 150 30.0
Sopen01g041750 Solanum pennellii HOM05D004384 ORTHO05D005797 2.7e-07 62.0 150 30.0
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 6.0e-07 60.8 288 23.6
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 1.0e-06 60.1 318 22.0
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 1.7e-06 59.3 244 25.0
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 2.3e-06 58.9 244 24.2
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 3.0e-06 58.5 216 24.1
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 3.0e-06 58.5 270 23.7
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 3.0e-06 58.5 244 25.0
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 3.9e-06 58.2 220 23.6
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 5.1e-06 57.8 220 23.6
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 5.1e-06 57.8 220 23.6
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 5.1e-06 57.8 220 23.6
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 6.6e-06 57.4 222 25.2
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 6.6e-06 57.4 154 28.6
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 8.7e-06 57.0 220 25.5


User provided reference genes

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