Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0519100 Oryza sativa ssp. japonica HOM05D009009 ORTHO05D010828 8.7e-221 770.0 391 100.0
Os02g0583500 Oryza sativa ssp. japonica HOM05D009009 ORTHO05D010828 7.0e-194 680.6 352 98.6
Os04g0519100 Oryza sativa ssp. japonica HOM05D009009 ORTHO05D010828 2.8e-126 456.1 233 96.1
Os06g0240600 Oryza sativa ssp. japonica HOM05D009009 ORTHO05D010828 4.9e-107 392.1 195 97.9
Os06g0271400 Oryza sativa ssp. japonica HOM05D009009 ORTHO05D010828 3.1e-77 293.1 345 49.9
Os01g0697250 Oryza sativa ssp. japonica HOM05D009009 ORTHO05D010828 1.4e-56 224.6 130 94.6
Zm00001eb384030 Zea mays HOM05D009009 ORTHO05D016371 2.2e-54 217.2 378 37.6
Zm00001eb176540 Zea mays HOM05D009009 ORTHO05D010828 1.3e-51 208.0 340 38.8
Zm00001eb278490 Zea mays HOM05D009009 ORTHO05D010828 2.9e-51 206.8 334 38.3
Zm00001eb276390 Zea mays HOM05D009009 ORTHO05D010828 4.3e-50 203.0 340 38.2
Zm00001eb308100 Zea mays HOM05D009009 ORTHO05D010828 1.0e-48 198.4 336 38.1
Os04g0228600 Oryza sativa ssp. japonica HOM05D009009 ORTHO05D010828 1.2e-44 184.9 148 62.8
Zm00001eb019990 Zea mays HOM05D009009 ORTHO05D010828 4.3e-42 176.4 339 35.7
Zm00001eb423000 Zea mays HOM05D009296 ORTHO05D010828 4.1e-37 159.8 344 34.0
Zm00001eb176390 Zea mays HOM05D009296 ORTHO05D010828 8.9e-32 142.1 299 34.1
Zm00001eb354130 Zea mays HOM05D009296 ORTHO05D010828 3.7e-30 136.7 255 36.1
Zm00001eb029830 Zea mays HOM05D009296 ORTHO05D010828 5.4e-29 132.9 377 28.9
Os02g0241300 Oryza sativa ssp. japonica HOM05D009009 ORTHO05D010828 7.8e-28 129.0 154 40.3
Zm00001eb417100 Zea mays HOM05D009009 ORTHO05D010828 1.1e-26 125.2 150 41.3
Dinv13764 Davidia involucrata HOM05D011313 ORTHO05D013316 5.8e-23 112.8 331 26.6
Zm00001eb385530 Zea mays HOM05D009296 ORTHO05D010828 1.3e-22 111.7 161 40.4
Zm00001eb084650 Zea mays HOM05D009296 ORTHO05D010828 2.3e-19 100.9 213 32.9
Zm00001eb006240 Zea mays HOM05D009296 ORTHO05D010828 2.8e-17 94.0 213 31.9
COL.COLO4_19832 Corchorus olitorius HOM05D015286 ORTHO05D000669 3.1e-16 90.5 287 26.1
COL.COLO4_16289 Corchorus olitorius HOM05D059948 ORTHO05D010661 4.4e-15 86.7 275 27.6
Dinv11320 Davidia involucrata HOM05D000791 ORTHO05D000669 2.4e-13 80.9 292 25.0
Zm00001eb341730 Zea mays HOM05D009009 ORTHO05D010828 2.4e-13 80.9 155 33.5
RcHm_v2.0_Chr3g0486961 Rosa chinensis HOM05D008705 ORTHO05D000669 7.1e-13 79.3 358 25.4
PGSC0003DMG400001138 Solanum tuberosum HOM05D008892 ORTHO05D010661 1.6e-12 78.2 233 27.9
Zm00001eb266790 Zea mays HOM05D009009 ORTHO05D010828 1.1e-10 72.0 83 38.6
FAN10G3855 Fragaria x ananassa HOM05D008705 ORTHO05D000669 3.3e-10 70.5 312 26.9
FAN10G2090 Fragaria x ananassa HOM05D008705 ORTHO05D000669 1.6e-09 68.2 291 27.1
Dinv06183 Davidia involucrata HOM05D011313 ORTHO05D013316 2.4e-08 64.3 99 30.3
SGA_v2.0_scaffold752G53551 Striga asiatica HOM05D025956 ORTHO05D000669 5.3e-08 63.2 306 22.2
Zm00001eb308370 Zea mays HOM05D009009 ORTHO05D016371 1.2e-07 62.0 70 38.6
CSS0000180 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 1.5e-07 61.6 391 24.8
FAN20G1055 Fragaria x ananassa HOM05D008705 ORTHO05D001863 3.4e-07 60.5 290 26.2
FAN09G3738 Fragaria x ananassa HOM05D008705 ORTHO05D001863 5.8e-07 59.7 288 24.7
vmacro01281 Vaccinium macrocarpon HOM05D017301 ORTHO05D000669 5.8e-07 59.7 290 24.1
MBI14_g38741_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.7e-06 58.2 130 27.7
MBI15_g15098_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.7e-06 58.2 247 25.1
CSS0026212 Camellia sinensis var. sinensis HOM05D010934 ORTHO05D000669 6.4e-06 56.2 237 25.7
MBI16_g11620_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 6.4e-06 56.2 202 25.2


User provided reference genes

Program Settings