Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0518900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 0.0e+00 2088.2 1020 100.0
Os11g0513900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 2.8e-162 577.0 921 36.2
Os11g0519500 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D300109 2.3e-108 397.9 819 32.8
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 1.8e-60 238.8 476 34.9
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 4.1e-60 237.7 472 33.7
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 4.1e-60 237.7 435 35.9
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 1.0e-58 233.0 456 33.3
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 5.0e-58 230.7 479 32.8
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 1.9e-57 228.8 435 34.3
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 2.5e-57 228.4 440 33.4
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 2.5e-57 228.4 471 33.8
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 5.5e-57 227.3 469 32.6
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 4.6e-56 224.2 467 33.4
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 6.1e-56 223.8 432 34.7
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 6.1e-56 223.8 432 34.0
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 7.9e-56 223.4 435 34.7
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 1.0e-55 223.0 498 32.9
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 2.3e-55 221.9 433 33.9
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 6.7e-55 220.3 433 33.0
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 8.8e-55 219.9 524 31.3
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 1.5e-54 219.2 468 32.7
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 3.3e-54 218.0 431 33.4
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 4.4e-54 217.6 436 33.5
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 4.4e-54 217.6 433 32.3
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 4.4e-54 217.6 436 34.2
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 7.4e-54 216.9 467 32.1
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 7.4e-54 216.9 435 32.4
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 9.7e-54 216.5 471 33.3
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 9.7e-54 216.5 434 33.4
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 1.3e-53 216.1 430 33.3
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 1.7e-53 215.7 438 32.4
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 1.7e-53 215.7 478 32.8
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 1.7e-53 215.7 478 32.8
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 2.8e-53 214.9 431 34.1
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 3.7e-53 214.5 481 32.6
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 4.8e-53 214.2 479 33.4
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 4.8e-53 214.2 435 33.1
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 4.8e-53 214.2 436 33.3
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 6.3e-53 213.8 436 33.0
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 8.2e-53 213.4 436 34.6
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 8.2e-53 213.4 433 32.8
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 8.2e-53 213.4 435 33.1
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 8.2e-53 213.4 435 33.6
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 8.2e-53 213.4 477 31.2
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 8.2e-53 213.4 467 31.5
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 1.1e-52 213.0 479 32.4
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 1.1e-52 213.0 471 32.1
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 1.1e-52 213.0 423 32.4
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 1.4e-52 212.6 429 32.6
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 2.4e-52 211.8 477 31.9
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 3.1e-52 211.5 473 32.1
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 3.1e-52 211.5 471 31.6
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 3.1e-52 211.5 434 32.3
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 3.1e-52 211.5 441 31.5
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 3.1e-52 211.5 436 33.0
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 4.1e-52 211.1 471 31.6
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 4.1e-52 211.1 435 32.6
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 4.1e-52 211.1 435 32.9
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 5.3e-52 210.7 470 31.7
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 5.3e-52 210.7 437 33.0
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 5.3e-52 210.7 472 32.4
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 6.9e-52 210.3 436 32.8
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 9.1e-52 209.9 436 32.6
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 9.1e-52 209.9 436 32.6
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 1.2e-51 209.5 470 31.7
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 1.2e-51 209.5 436 32.8
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 1.2e-51 209.5 436 32.6
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 1.2e-51 209.5 438 33.3
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 1.5e-51 209.1 436 32.3
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 2.0e-51 208.8 470 31.7
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 2.6e-51 208.4 442 30.8
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 2.6e-51 208.4 434 33.4
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 2.6e-51 208.4 436 32.6
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 3.4e-51 208.0 477 31.2
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 4.5e-51 207.6 451 31.7
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 5.9e-51 207.2 428 32.2
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 5.9e-51 207.2 437 33.0
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 5.9e-51 207.2 432 34.3
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 1.0e-50 206.5 495 30.9
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 1.0e-50 206.5 472 32.4
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 1.0e-50 206.5 434 32.0
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 1.3e-50 206.1 473 32.1
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 1.3e-50 206.1 474 31.6
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 2.9e-50 204.9 473 31.7
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 2.9e-50 204.9 436 32.3
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 3.8e-50 204.5 481 31.6
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 3.8e-50 204.5 435 32.2
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 5.0e-50 204.1 482 30.5
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 8.5e-50 203.4 479 31.7
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 1.1e-49 203.0 475 30.9
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.4e-49 202.6 471 31.8
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 2.5e-49 201.8 467 30.6
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 2.1e-48 198.7 477 29.6
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 6.1e-48 197.2 470 31.3
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 1.0e-47 196.4 436 31.7
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 1.1e-46 193.0 407 32.7
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 4.8e-45 187.6 428 32.5
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 8.2e-45 186.8 452 30.8
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 8.2e-45 186.8 456 30.9
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 1.6e-43 182.6 420 31.2
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 1.6e-43 182.6 338 36.4
Os11g0513500 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D294786 2.0e-43 182.2 205 46.3
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 1.7e-42 179.1 421 30.4
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 3.8e-42 177.9 472 29.2
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 3.8e-42 177.9 326 34.7
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 4.2e-41 174.5 339 33.0
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 3.0e-39 168.3 418 30.1
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 1.2e-38 166.4 418 29.9
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 1.2e-38 166.4 431 29.0
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 2.6e-38 165.2 319 33.2
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 3.3e-38 164.9 421 28.5
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 5.7e-38 164.1 305 32.8
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 1.7e-37 162.5 441 28.1
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 2.0e-35 155.6 419 28.4
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 9.4e-33 146.7 280 33.6
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 6.3e-29 134.0 448 26.1
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 9.1e-28 130.2 240 35.0
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 2.7e-27 128.6 452 25.7
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 2.7e-27 128.6 457 26.0
SEGI_23591 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 4.5e-27 127.9 235 35.3
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 5.0e-26 124.4 449 26.1
Os11g0516800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D298044 2.5e-25 122.1 196 41.3
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 9.2e-20 103.6 452 24.8
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 1.6e-19 102.8 232 34.1
Sopen00g006590 Solanum pennellii HOM05D004384 ORTHO05D005797 4.5e-19 101.3 216 32.9
Sopen01g041750 Solanum pennellii HOM05D004384 ORTHO05D005797 4.5e-19 101.3 216 32.9
Os11g0517800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D299849 5.6e-17 94.4 243 30.0
Sopen00g006580 Solanum pennellii HOM05D004384 ORTHO05D005797 1.1e-09 70.1 157 29.3
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 1.1e-09 70.1 157 29.3
Glyma.02G183700 Glycine max HOM05D004384 ORTHO05D005797 2.6e-06 58.9 198 25.3


User provided reference genes

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