Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0517800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D299849 0.0e+00 1365.1 678 100.0
Os11g0519500 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D300109 7.4e-34 149.8 451 28.4
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 7.2e-21 106.7 208 35.6
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 2.1e-20 105.1 221 32.6
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 4.7e-20 104.0 213 33.3
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 4.7e-20 104.0 220 34.1
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 1.0e-19 102.8 213 33.3
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 1.0e-19 102.8 213 33.3
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 1.0e-19 102.8 413 27.6
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 1.4e-19 102.4 213 32.9
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 1.8e-19 102.1 213 33.3
HPP92_011287 Vanilla planifolia HOM05D004384 ORTHO05D005797 2.3e-19 101.7 225 33.3
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 5.2e-19 100.5 213 32.9
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 6.7e-19 100.1 213 32.9
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 6.7e-19 100.1 347 28.8
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 1.5e-18 99.0 366 26.5
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 2.6e-18 98.2 364 26.4
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 4.4e-18 97.4 252 29.8
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 7.4e-18 96.7 213 31.5
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 1.7e-17 95.5 365 27.4
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 2.2e-17 95.1 345 28.1
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 2.2e-17 95.1 252 29.0
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 2.8e-17 94.7 213 30.5
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 2.8e-17 94.7 345 27.5
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 4.8e-17 94.0 341 26.4
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 4.8e-17 94.0 354 28.0
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 8.2e-17 93.2 208 30.8
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 1.1e-16 92.8 216 31.0
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 1.1e-16 92.8 216 31.0
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 1.4e-16 92.4 365 26.6
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 1.8e-16 92.0 369 26.8
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 1.8e-16 92.0 369 26.8
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 2.4e-16 91.7 235 30.2
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 2.4e-16 91.7 335 29.3
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 2.4e-16 91.7 366 25.4
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 3.1e-16 91.3 276 29.7
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 3.1e-16 91.3 208 30.8
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 3.1e-16 91.3 208 31.2
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 4.1e-16 90.9 345 27.8
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 4.1e-16 90.9 252 28.2
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 5.3e-16 90.5 213 31.5
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 5.3e-16 90.5 338 27.2
Haze_04301 Corylus avellana HOM05D004384 ORTHO05D005797 5.3e-16 90.5 240 29.6
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 5.3e-16 90.5 365 26.6
Os11g0518900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 5.3e-16 90.5 243 30.0
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 5.3e-16 90.5 243 28.0
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 7.0e-16 90.1 264 29.2
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 7.0e-16 90.1 348 27.6
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 9.1e-16 89.7 264 29.2
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 9.1e-16 89.7 259 29.3
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 9.1e-16 89.7 249 28.9
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 9.1e-16 89.7 213 31.0
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 9.1e-16 89.7 249 28.9
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 1.2e-15 89.4 347 27.1
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 1.2e-15 89.4 238 29.0
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 1.2e-15 89.4 339 27.4
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 1.2e-15 89.4 322 28.0
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 1.6e-15 89.0 249 29.7
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 2.0e-15 88.6 341 28.4
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 2.0e-15 88.6 346 26.9
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 4.5e-15 87.4 359 24.8
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 5.9e-15 87.0 335 25.7
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 5.9e-15 87.0 371 28.0
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 7.7e-15 86.7 349 26.9
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 7.7e-15 86.7 249 27.7
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 7.7e-15 86.7 249 28.9
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 1.3e-14 85.9 351 26.2
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 1.7e-14 85.5 346 26.3
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 1.7e-14 85.5 355 25.1
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 1.7e-14 85.5 346 26.6
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 2.2e-14 85.1 284 26.8
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 2.9e-14 84.7 208 28.4
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 2.9e-14 84.7 346 25.1
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 2.9e-14 84.7 369 26.6
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 2.9e-14 84.7 213 28.6
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 2.9e-14 84.7 259 28.2
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 5.0e-14 84.0 348 25.3
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 6.5e-14 83.6 376 26.9
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 6.5e-14 83.6 208 26.9
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 6.5e-14 83.6 344 25.3
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 6.5e-14 83.6 361 24.9
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 8.5e-14 83.2 376 26.9
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 1.1e-13 82.8 367 25.6
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 1.5e-13 82.4 351 24.8
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 1.9e-13 82.0 341 26.4
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 2.5e-13 81.6 311 28.6
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 2.5e-13 81.6 345 27.2
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 3.2e-13 81.3 213 26.3
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 4.2e-13 80.9 351 26.2
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 4.2e-13 80.9 282 27.3
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 4.2e-13 80.9 346 25.1
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 5.5e-13 80.5 346 25.1
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 7.2e-13 80.1 369 24.7
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 7.2e-13 80.1 367 25.9
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 1.2e-12 79.3 344 26.2
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 1.6e-12 79.0 208 26.9
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 1.6e-12 79.0 349 26.1
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 1.6e-12 79.0 349 26.1
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 1.6e-12 79.0 349 26.1
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 3.6e-12 77.8 343 25.4
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 4.7e-12 77.4 348 25.9
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 6.1e-12 77.0 291 26.1
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 1.4e-11 75.9 341 26.7
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 1.4e-11 75.9 213 27.2
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 2.3e-11 75.1 356 23.3
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 1.2e-10 72.8 213 26.8
Os11g0517400 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D298167 5.7e-10 70.5 37 83.8
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 2.2e-09 68.6 325 26.2
CSS0044605 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 2.8e-09 68.2 100 39.0
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 6.3e-09 67.0 180 26.7
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 1.6e-07 62.4 207 25.6
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 1.6e-07 62.4 217 27.6
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 2.7e-07 61.6 241 25.3
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 2.7e-07 61.6 203 26.6
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 3.5e-07 61.2 203 26.6
HPP92_011309 Vanilla planifolia HOM05D004384 ORTHO05D005797 3.5e-07 61.2 161 29.8
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 1.7e-06 58.9 327 24.5
Os11g0513900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 2.9e-06 58.2 68 42.6
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 5.0e-06 57.4 206 25.7
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 6.5e-06 57.0 211 26.1


User provided reference genes

Program Settings