Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0517350 Oryza sativa ssp. japonica HOM05D004473 ORTHO05D005652 1.1e-34 149.4 78 100.0
Medtr0002s0390 Medicago truncatula HOM05D004473 ORTHO05D005652 8.0e-17 90.1 60 75.0
Gorai.005G171000 Gossypium raimondii HOM05D004473 ORTHO05D005652 1.8e-13 79.0 62 59.7
Duzib147G0859 Durio zibethinus HOM05D004473 ORTHO05D005696 5.4e-13 77.4 62 58.1
Gohir.1Z050066 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.6e-12 75.9 62 58.1
Gohir.A04G039120 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.6e-12 75.9 62 58.1
Gohir.A04G039150 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.6e-12 75.9 62 58.1
Gorai.002G165800 Gossypium raimondii HOM05D001387 ORTHO05D001250 3.5e-12 74.7 62 56.5
Hund27810 Selenicereus undatus HOM05D004473 ORTHO05D005652 7.8e-12 73.6 62 56.5
Hund29000 Selenicereus undatus HOM05D004473 ORTHO05D005652 7.8e-12 73.6 62 56.5
Hund29659 Selenicereus undatus HOM05D004473 ORTHO05D005652 7.8e-12 73.6 62 56.5
Hund29926 Selenicereus undatus HOM05D004473 ORTHO05D005652 7.8e-12 73.6 62 56.5
Hund30352 Selenicereus undatus HOM05D004473 ORTHO05D005652 7.8e-12 73.6 62 56.5
Lj2P1238T61 Lonicera japonica HOM05D004473 ORTHO05D005652 1.0e-11 73.2 62 58.1
Lj2P1239T154 Lonicera japonica HOM05D004473 ORTHO05D005652 1.0e-11 73.2 62 58.1
Hund10282 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.0e-11 73.2 62 56.5
Gohir.A08G095662 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.3e-11 72.8 62 54.8
Hund29405 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.3e-11 72.8 60 58.3
GSVIVG01022885001 Vitis vinifera HOM05D004473 ORTHO05D005652 1.3e-11 72.8 62 56.5
Hund28272 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.9e-11 71.6 62 54.8
Eucgr.D01147 Eucalyptus grandis HOM05D004473 ORTHO05D005652 3.9e-11 71.2 62 58.1
ScUNg0001290 Simmondsia chinensis HOM05D004473 ORTHO05D005652 3.9e-11 71.2 62 50.0
EL10As2g23210 Beta vulgaris HOM05D004473 ORTHO05D005652 5.0e-11 70.9 62 51.6
Eucgr.D00924 Eucalyptus grandis HOM05D004473 ORTHO05D005652 5.0e-11 70.9 62 56.5
Hma1.2p1_4210F.1_g338470 Hydrangea macrophylla HOM05D004473 ORTHO05D005652 5.0e-11 70.9 62 56.5
Sopen01g008040 Solanum pennellii HOM05D004473 ORTHO05D005652 5.0e-11 70.9 56 60.7
PGR111G0117 Punica granatum HOM05D004473 ORTHO05D005652 6.6e-11 70.5 62 54.8
Atru.chr6.757 Acer truncatum HOM05D004473 ORTHO05D005652 1.1e-10 69.7 62 54.8
ATCG00040 Arabidopsis thaliana HOM05D004473 ORTHO05D005652 1.1e-10 69.7 62 53.2
CAN.G939.10 Capsicum annuum HOM05D004473 ORTHO05D005652 1.1e-10 69.7 56 60.7
Nn2g10392 Nelumbo nucifera HOM05D004473 ORTHO05D005652 1.1e-10 69.7 59 61.0
RcHm_v2.0_CPg0502521 Rosa chinensis HOM05D004473 ORTHO05D005652 1.5e-10 69.3 60 55.0
Hund25918 Selenicereus undatus HOM05D004473 ORTHO05D005652 1.5e-10 69.3 62 53.2
PGSC0003DMG400041047 Solanum tuberosum HOM05D004473 ORTHO05D005652 1.5e-10 69.3 56 58.9
BcaC05g28805 Brassica carinata HOM05D004473 ORTHO05D005652 2.5e-10 68.6 62 51.6
TWI34G1450 Tripterygium wilfordii HOM05D004473 ORTHO05D005652 2.5e-10 68.6 62 53.2
C06p21390 Brassica napus HOM05D004473 ORTHO05D005652 4.3e-10 67.8 62 51.6
BraSC143t45676Z Brassica rapa HOM05D004473 ORTHO05D005652 4.3e-10 67.8 62 51.6
BraSC151t45687Z Brassica rapa HOM05D004473 ORTHO05D005652 4.3e-10 67.8 62 51.6
BraSC25t45889Z Brassica rapa HOM05D004473 ORTHO05D005652 4.3e-10 67.8 62 51.6
DCAR_032465 Daucus carota HOM05D004473 ORTHO05D005652 7.3e-10 67.0 62 51.6
Lsat_1_v5_gn_7_76981 Lactuca sativa HOM05D004473 ORTHO05D005652 9.5e-10 66.6 62 51.6
Lalb_Chr07g0191541 Lupinus albus HOM05D004473 ORTHO05D005652 9.5e-10 66.6 61 52.5
HanXRQChr00c0125g0571751 Helianthus annuus HOM05D004473 ORTHO05D005652 1.2e-09 66.2 62 51.6
HanXRQChr00c0368g0574161 Helianthus annuus HOM05D004473 ORTHO05D005652 1.2e-09 66.2 62 51.6
HanXRQChr11g0326581 Helianthus annuus HOM05D004473 ORTHO05D005652 1.2e-09 66.2 62 51.6
HanXRQCPg0579741 Helianthus annuus HOM05D004473 ORTHO05D005652 1.2e-09 66.2 62 51.6
LjContig00489g0020099 Lotus japonicus HOM05D004473 ORTHO05D005652 1.2e-09 66.2 62 50.0
arahy.Tifrunner.gnm1.ann1.85ZYV6 Arachis hypogaea HOM05D004473 ORTHO05D005652 1.6e-09 65.9 53 60.4
BolC2t10578H Brassica oleracea HOM05D004473 ORTHO05D005652 2.8e-09 65.1 56 53.6
BolSC37t60777H Brassica oleracea HOM05D004473 ORTHO05D005652 2.8e-09 65.1 56 53.6
BolSC45t60885H Brassica oleracea HOM05D004473 ORTHO05D005652 2.8e-09 65.1 56 53.6
BolSC45t60929H Brassica oleracea HOM05D004473 ORTHO05D005652 2.8e-09 65.1 56 53.6
BolSC46t60978H Brassica oleracea HOM05D004473 ORTHO05D005652 2.8e-09 65.1 56 53.6
Lsat_1_v5_gn_2_89740 Lactuca sativa HOM05D004473 ORTHO05D005652 3.6e-09 64.7 62 50.0
SalBow1G8010 Salvia bowleyana HOM05D004473 ORTHO05D005652 4.7e-09 64.3 61 50.8
Thhalv10001851m.g Eutrema salsugineum HOM05D004473 ORTHO05D005652 8.0e-09 63.5 55 54.5
Gohir.1Z049403 Gossypium hirsutum HOM05D004473 ORTHO05D005652 1.0e-08 63.2 52 55.8
Peaxi162Scf00219g00048 Petunia axillaris HOM05D004473 ORTHO05D001250 1.0e-08 63.2 52 59.6
PSO548G0076 Papaver somniferum HOM05D004473 ORTHO05D005652 1.8e-08 62.4 60 46.7
Nn3g16148 Nelumbo nucifera HOM05D004473 ORTHO05D005652 2.3e-08 62.0 59 57.6
Medtr3g035685 Medicago truncatula HOM05D004473 ORTHO05D005652 3.1e-08 61.6 62 48.4
Medtr4g051280 Medicago truncatula HOM05D004473 ORTHO05D005652 3.1e-08 61.6 62 48.4
Sed0017792 Sechium edule HOM05D004473 ORTHO05D005652 3.1e-08 61.6 62 50.0
Sed0024057 Sechium edule HOM05D004473 ORTHO05D005652 3.1e-08 61.6 62 50.0
SGA_v2.0_scaffold479G52250 Striga asiatica HOM05D004473 ORTHO05D005652 4.0e-08 61.2 57 50.9
TPR.G10220 Trifolium pratense HOM05D004473 ORTHO05D005652 4.0e-08 61.2 62 48.4
TPR.G40775 Trifolium pratense HOM05D004473 ORTHO05D005652 4.0e-08 61.2 62 48.4
Solyc00g500048.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 1.2e-07 59.7 52 55.8
Solyc00g500131.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 1.2e-07 59.7 52 55.8
Solyc00g500201.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 1.2e-07 59.7 52 55.8
Solyc00g500295.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 1.2e-07 59.7 52 55.8
Solyc00g500330.1 Solanum lycopersicum HOM05D004473 ORTHO05D005652 1.2e-07 59.7 52 55.8
Potri.013G138201 Populus trichocarpa HOM05D004473 ORTHO05D005652 2.0e-07 58.9 64 51.6
Hund29400 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.6e-07 58.5 52 53.8
Hund30056 Selenicereus undatus HOM05D004473 ORTHO05D005652 2.6e-07 58.5 52 53.8
CAN.G156.6 Capsicum annuum HOM05D004473 ORTHO05D005652 2.9e-06 55.1 52 48.1
Nitab4.5_0011099g0050 Nicotiana tabacum HOM05D004473 ORTHO05D005652 3.7e-06 54.7 48 56.2


User provided reference genes

Program Settings