Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0516100 Oryza sativa ssp. japonica HOM05D007124 ORTHO05D008980 2.8e-32 141.4 72 100.0
Cpa.g.sc12.260 Carica papaya HOM05D007124 ORTHO05D008980 2.8e-24 114.8 70 81.4
Hma1.2p1_1332F.1_g276070 Hydrangea macrophylla HOM05D007124 ORTHO05D008980 6.2e-24 113.6 69 79.7
Actinidia32270 Actinidia chinensis HOM05D002089 ORTHO05D002848 8.2e-24 113.2 70 75.7
Eucgr.F00713 Eucalyptus grandis HOM05D007124 ORTHO05D008980 1.1e-23 112.8 69 78.3
Atru.chr2.3503 Acer truncatum HOM05D007124 ORTHO05D008980 4.0e-23 110.9 70 71.4
CSS0015017 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 4.0e-23 110.9 69 76.8
ATR0317G094 Amborella trichopoda HOM05D007124 ORTHO05D008980 5.3e-23 110.5 67 77.6
Nn1g07252 Nelumbo nucifera HOM05D007124 ORTHO05D008980 6.9e-23 110.2 69 76.8
Sc12g0005860 Simmondsia chinensis HOM05D007124 ORTHO05D008980 9.0e-23 109.8 71 77.5
CSS0008346 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 1.2e-22 109.4 69 75.4
CSS0017817 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 1.2e-22 109.4 69 75.4
Ciclev10009664m.g Citrus clementina HOM05D007124 ORTHO05D008980 2.0e-22 108.6 71 76.1
Hma1.2p1_0036F.1_g023250 Hydrangea macrophylla HOM05D007124 ORTHO05D008980 2.0e-22 108.6 69 76.8
Nitab4.5_0000755g0100 Nicotiana tabacum HOM05D007124 ORTHO05D008980 2.0e-22 108.6 68 75.0
THA.LOC104811625 Tarenaya hassleriana HOM05D007124 ORTHO05D008980 2.0e-22 108.6 64 78.1
Thecc.07G030700 Theobroma cacao HOM05D007124 ORTHO05D008980 2.0e-22 108.6 67 80.6
Ciclev10010691m.g Citrus clementina HOM05D007124 ORTHO05D008980 2.6e-22 108.2 70 74.3
Duzib170G0848 Durio zibethinus HOM05D007124 ORTHO05D008980 2.6e-22 108.2 71 76.1
Duzib213G1022 Durio zibethinus HOM05D007124 ORTHO05D008980 2.6e-22 108.2 71 76.1
CSS0011277 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 3.4e-22 107.8 69 73.9
MBI15_g24201_MAGBIO Magnolia biondii HOM05D007124 ORTHO05D008980 3.4e-22 107.8 70 72.9
Manes.12G070300 Manihot esculenta HOM05D007124 ORTHO05D008980 4.5e-22 107.5 69 75.4
Peaxi162Scf00040g00004 Petunia axillaris HOM05D007124 ORTHO05D008980 4.5e-22 107.5 70 75.7
Sopen11g027200 Solanum pennellii HOM05D007124 ORTHO05D008980 4.5e-22 107.5 67 74.6
PGSC0003DMG400026339 Solanum tuberosum HOM05D007124 ORTHO05D008980 4.5e-22 107.5 64 78.1
AUR62008759 Chenopodium quinoa HOM05D007124 ORTHO05D008980 5.8e-22 107.1 70 78.6
AUR62025479 Chenopodium quinoa HOM05D007124 ORTHO05D008980 5.8e-22 107.1 70 78.6
MBI08_g04916_MAGBIO Magnolia biondii HOM05D007124 ORTHO05D008980 5.8e-22 107.1 69 72.5
Nitab4.5_0010969g0020 Nicotiana tabacum HOM05D007124 ORTHO05D008980 5.8e-22 107.1 68 75.0
Potri.001G314100 Populus trichocarpa HOM05D007124 ORTHO05D008980 5.8e-22 107.1 69 75.4
Sed0025305 Sechium edule HOM05D007124 ORTHO05D008980 5.8e-22 107.1 68 70.6
PGR004G2244 Punica granatum HOM05D007124 ORTHO05D008980 7.6e-22 106.7 68 75.0
QL08p007019 Quercus lobata HOM05D007124 ORTHO05D008980 1.0e-21 106.3 69 73.9
EL10Ac7g17641 Beta vulgaris HOM05D007124 ORTHO05D008980 1.3e-21 105.9 68 75.0
Ah.15g092770 Amaranthus hybridus HOM05D007124 ORTHO05D008980 1.7e-21 105.5 71 76.1
A02p09870 Brassica napus HOM05D007124 ORTHO05D008980 1.7e-21 105.5 67 71.6
CANSAT11G2294 Cannabis sativa HOM05D007124 ORTHO05D008980 1.7e-21 105.5 69 71.0
Gohir.1Z049637 Gossypium hirsutum HOM05D007124 ORTHO05D008980 1.7e-21 105.5 67 76.1
Gohir.D05G373400 Gossypium hirsutum HOM05D007124 ORTHO05D008980 1.7e-21 105.5 67 76.1
Gorai.009G442100 Gossypium raimondii HOM05D007124 ORTHO05D008980 1.7e-21 105.5 67 76.1
Migut.H01802 Erythranthe guttata HOM05D007124 ORTHO05D008980 2.9e-21 104.8 67 73.1
SHI10538 Sapria himalayana HOM05D007124 ORTHO05D008980 2.9e-21 104.8 72 69.4
FvH4_3g23350 Fragaria vesca HOM05D007124 ORTHO05D008980 3.8e-21 104.4 67 68.7
FAN25G2055 Fragaria x ananassa HOM05D007124 ORTHO05D008980 3.8e-21 104.4 67 68.7
CiPaw.12G132500 Carya illinoinensis HOM05D007124 ORTHO05D008980 5.0e-21 104.0 68 69.1
Oeu013124.1 Olea europaea HOM05D007124 ORTHO05D008980 5.0e-21 104.0 67 73.1
FAN02G4031 Fragaria x ananassa HOM05D007124 ORTHO05D008980 6.5e-21 103.6 67 68.7
FAN16G3348 Fragaria x ananassa HOM05D007124 ORTHO05D008980 6.5e-21 103.6 67 68.7
FAN21G2784 Fragaria x ananassa HOM05D007124 ORTHO05D008980 6.5e-21 103.6 68 67.6
Sp6g17060 Schrenkiella parvula HOM05D007124 ORTHO05D008980 6.5e-21 103.6 68 69.1
Aqoxy1G03004 Aquilegia oxysepala HOM05D007124 ORTHO05D008980 8.4e-21 103.2 69 72.5
BcaC03g14263 Brassica carinata HOM05D007124 ORTHO05D008980 8.4e-21 103.2 64 71.9
A10p12390 Brassica napus HOM05D007124 ORTHO05D008980 8.4e-21 103.2 64 71.9
C02p16400 Brassica napus HOM05D007124 ORTHO05D008980 8.4e-21 103.2 64 71.9
C09p45870 Brassica napus HOM05D007124 ORTHO05D008980 8.4e-21 103.2 64 71.9
BolC2t07742H Brassica oleracea HOM05D007124 ORTHO05D008980 8.4e-21 103.2 64 71.9
BraA02t06051Z Brassica rapa HOM05D007124 ORTHO05D008980 8.4e-21 103.2 64 71.9
BraA10t43334Z Brassica rapa HOM05D007124 ORTHO05D008980 8.4e-21 103.2 64 71.9
CiPaw.11G193400 Carya illinoinensis HOM05D007124 ORTHO05D008980 8.4e-21 103.2 68 69.1
FAN05G4905 Fragaria x ananassa HOM05D007124 ORTHO05D008980 8.4e-21 103.2 60 73.3
FAN11G2242 Fragaria x ananassa HOM05D007124 ORTHO05D008980 8.4e-21 103.2 67 67.2
RcHm_v2.0_Chr5g0041121 Rosa chinensis HOM05D007124 ORTHO05D008980 8.4e-21 103.2 67 67.2
AL8G30630 Arabidopsis lyrata HOM05D007124 ORTHO05D008980 1.1e-20 102.8 68 70.6
AT5G55125 Arabidopsis thaliana HOM05D007124 ORTHO05D008980 1.1e-20 102.8 68 70.6
Carub.0008s1542 Capsella rubella HOM05D007124 ORTHO05D008980 1.1e-20 102.8 68 70.6
Lsat_1_v5_gn_5_3160 Lactuca sativa HOM05D007124 ORTHO05D008980 1.1e-20 102.8 68 69.1
Sabra16G0198600 Salix brachista HOM05D007124 ORTHO05D008980 1.1e-20 102.8 70 74.3
Cfa020296 Carpinus fangiana HOM05D007124 ORTHO05D008980 1.4e-20 102.4 65 72.3
SGA_v2.0_scaffold120G32846 Striga asiatica HOM05D007124 ORTHO05D008980 1.4e-20 102.4 59 78.0
BcaB08g35876 Brassica carinata HOM05D007124 ORTHO05D008980 1.9e-20 102.1 64 70.3
CARHR268480 Cardamine hirsuta HOM05D007124 ORTHO05D008980 1.9e-20 102.1 68 73.5
Thhalv10015372m.g Eutrema salsugineum HOM05D007124 ORTHO05D008980 1.9e-20 102.1 64 73.4
FvH4_6g31480 Fragaria vesca HOM05D007124 ORTHO05D008980 2.5e-20 101.7 67 68.7
Prupe.4G220900 Prunus persica HOM05D007124 ORTHO05D008980 2.5e-20 101.7 67 67.2
SGA_v2.0_scaffold363G49951 Striga asiatica HOM05D007124 ORTHO05D008980 3.2e-20 101.3 69 68.1
BcaC04g20268 Brassica carinata HOM05D007124 ORTHO05D008980 4.2e-20 100.9 64 71.9
BolC9t57437H Brassica oleracea HOM05D007124 ORTHO05D008980 4.2e-20 100.9 64 71.9
TWI39G0219 Tripterygium wilfordii HOM05D007124 ORTHO05D008980 4.2e-20 100.9 68 72.1
Aa31LG3G11120 Aethionema arabicum HOM05D007124 ORTHO05D008980 5.5e-20 100.5 75 65.3
Haze_09723 Corylus avellana HOM05D007124 ORTHO05D008980 5.5e-20 100.5 67 68.7
PSO675G6679 Papaver somniferum HOM05D007124 ORTHO05D008980 5.5e-20 100.5 67 67.2
Glyma.10G051000 Glycine max HOM05D007124 ORTHO05D008980 7.1e-20 100.1 68 70.6
Glyma.13G138500 Glycine max HOM05D007124 ORTHO05D008980 7.1e-20 100.1 69 71.0
Glyma.13G152338 Glycine max HOM05D007124 ORTHO05D008980 7.1e-20 100.1 69 71.0
Lalb_Chr15g0089611 Lupinus albus HOM05D007124 ORTHO05D008980 7.1e-20 100.1 68 69.1
Psat1g201480 Pisum sativum HOM05D007124 ORTHO05D008980 7.1e-20 100.1 68 72.1
HPP92_015305 Vanilla planifolia HOM05D007124 ORTHO05D008980 7.1e-20 100.1 70 62.9
Lalb_Chr18g0059321 Lupinus albus HOM05D007124 ORTHO05D008980 9.3e-20 99.8 67 70.1
Medtr2g014910 Medicago truncatula HOM05D007124 ORTHO05D008980 9.3e-20 99.8 64 73.4
Psat0s3039g0080 Pisum sativum HOM05D007124 ORTHO05D008980 9.3e-20 99.8 68 72.1
DCAR_009645 Daucus carota HOM05D007124 ORTHO05D008980 1.2e-19 99.4 66 68.2
Medtr2g014940 Medicago truncatula HOM05D007124 ORTHO05D008980 2.1e-19 98.6 64 73.4
Phvul.006G180400 Phaseolus vulgaris HOM05D007124 ORTHO05D008980 2.7e-19 98.2 69 69.6
Cc05_g14150 Coffea canephora HOM05D007124 ORTHO05D008980 4.6e-19 97.4 71 66.2
Lj6g0008322 Lotus japonicus HOM05D007124 ORTHO05D008980 4.6e-19 97.4 69 69.6
arahy.Tifrunner.gnm1.ann1.902QMU Arachis hypogaea HOM05D007124 ORTHO05D008980 1.3e-18 95.9 68 67.6
arahy.Tifrunner.gnm1.ann1.E6QS8A Arachis hypogaea HOM05D007124 ORTHO05D008980 3.0e-18 94.7 68 66.2
Ca_00376_v3 Cicer arietinum L. HOM05D007124 ORTHO05D008980 3.9e-18 94.4 69 66.7
Ca_00400_v3 Cicer arietinum L. HOM05D007124 ORTHO05D008980 3.9e-18 94.4 69 66.7
vmacro13375 Vaccinium macrocarpon HOM05D007124 ORTHO05D008980 3.9e-18 94.4 68 64.7
CsaV3_2G002880 Cucumis sativus L. HOM05D007124 ORTHO05D008980 1.9e-17 92.0 67 62.7
Solyc11g068490.1 Solanum lycopersicum HOM05D007124 ORTHO05D008980 5.7e-17 90.5 59 72.9
MELO3C004505.2 Cucumis melo HOM05D007124 ORTHO05D008980 9.7e-17 89.7 65 63.1
ECA246G4235 Erigeron canadensis HOM05D007124 ORTHO05D008980 9.7e-17 89.7 50 78.0
HanXRQChr08g0233551 Helianthus annuus HOM05D007124 ORTHO05D008980 9.7e-17 89.7 59 71.2
Glyma.10G069200 Glycine max HOM05D007124 ORTHO05D008980 3.7e-16 87.8 67 65.7
Sabra16G0233800 Salix brachista HOM05D000336 ORTHO05D000593 4.1e-15 84.3 52 76.9
MD03G1195200 Malus domestica HOM05D007124 ORTHO05D008980 3.4e-14 81.3 53 66.0
BcaB05g22183 Brassica carinata HOM05D007124 ORTHO05D008980 7.7e-14 80.1 57 63.2
Mapoly0141s0007 Marchantia polymorpha HOM05D007124 ORTHO05D008980 4.1e-07 57.8 65 40.0


User provided reference genes

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