Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Os11g0513900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 0.0e+00 2097.4 1032 100.0
Os11g0518900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 1.6e-160 571.2 921 36.2
Os11g0513500 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D294786 2.3e-103 381.3 208 88.5
Os11g0519500 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D300109 1.3e-74 285.8 774 28.6
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 1.5e-57 229.2 471 31.6
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 8.0e-56 223.4 480 31.9
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 2.3e-55 221.9 482 33.0
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 2.3e-55 221.9 475 32.0
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 1.5e-54 219.2 452 33.0
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 3.4e-54 218.0 508 30.7
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 3.4e-54 218.0 479 32.6
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 4.4e-54 217.6 508 30.5
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 1.3e-53 216.1 461 32.1
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 1.3e-53 216.1 461 32.1
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 2.2e-53 215.3 479 31.7
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 2.9e-53 214.9 461 32.1
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 3.7e-53 214.5 461 32.1
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 4.9e-53 214.2 480 31.7
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 4.9e-53 214.2 461 32.1
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 4.9e-53 214.2 461 32.1
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 6.4e-53 213.8 461 31.9
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 6.4e-53 213.8 456 31.4
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 8.3e-53 213.4 460 32.6
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 8.3e-53 213.4 466 32.2
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 1.4e-52 212.6 464 32.1
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 1.4e-52 212.6 454 32.2
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 5.4e-52 210.7 483 32.1
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 9.2e-52 209.9 479 30.5
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 1.2e-51 209.5 508 29.9
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 1.6e-51 209.1 460 32.2
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 1.6e-51 209.1 476 31.5
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 2.0e-51 208.8 503 29.6
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 2.0e-51 208.8 510 30.4
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 2.0e-51 208.8 479 31.1
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 2.0e-51 208.8 477 29.8
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 2.7e-51 208.4 503 29.6
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 2.7e-51 208.4 461 31.7
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 3.5e-51 208.0 510 30.2
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 4.6e-51 207.6 481 30.8
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 4.6e-51 207.6 475 30.9
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 7.8e-51 206.8 479 30.1
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 7.8e-51 206.8 510 30.8
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 1.0e-50 206.5 503 29.6
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 1.0e-50 206.5 506 30.0
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 1.3e-50 206.1 484 30.2
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 1.3e-50 206.1 484 30.2
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 1.3e-50 206.1 506 30.2
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 1.3e-50 206.1 507 29.8
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 1.3e-50 206.1 477 30.2
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 1.3e-50 206.1 479 31.7
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 1.3e-50 206.1 510 30.8
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 1.7e-50 205.7 479 29.9
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 1.7e-50 205.7 477 30.0
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 1.7e-50 205.7 497 30.0
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 1.7e-50 205.7 479 31.5
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 1.7e-50 205.7 507 29.8
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 1.7e-50 205.7 462 30.5
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 2.3e-50 205.3 506 29.4
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 3.0e-50 204.9 459 31.8
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 6.6e-50 203.8 459 30.9
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 8.6e-50 203.4 454 31.3
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 8.6e-50 203.4 509 29.1
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 8.6e-50 203.4 503 30.2
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 8.6e-50 203.4 477 30.6
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 1.1e-49 203.0 461 31.2
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 1.5e-49 202.6 483 30.6
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 1.5e-49 202.6 454 31.7
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 1.9e-49 202.2 508 30.1
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 1.9e-49 202.2 479 29.9
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.9e-49 202.2 438 31.7
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 2.5e-49 201.8 507 30.0
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 2.5e-49 201.8 464 32.5
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 3.3e-49 201.4 472 31.4
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 4.3e-49 201.1 456 30.3
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 4.3e-49 201.1 459 31.4
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 5.6e-49 200.7 509 29.9
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 5.6e-49 200.7 485 29.9
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 5.6e-49 200.7 477 30.8
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 7.3e-49 200.3 467 30.8
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 7.3e-49 200.3 487 30.2
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 9.5e-49 199.9 459 32.2
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 1.2e-48 199.5 455 30.5
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 1.2e-48 199.5 435 32.9
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 1.6e-48 199.1 463 31.3
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 2.1e-48 198.7 501 29.3
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 2.8e-48 198.4 481 29.9
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 4.7e-48 197.6 511 29.7
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 1.4e-47 196.1 467 32.1
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 1.4e-47 196.1 511 31.3
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 1.8e-47 195.7 483 29.4
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 1.8e-47 195.7 461 30.4
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 2.3e-47 195.3 486 29.2
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 4.0e-47 194.5 457 30.9
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 6.8e-47 193.7 478 30.1
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 2.0e-46 192.2 448 30.1
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 2.0e-46 192.2 506 29.4
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 5.8e-46 190.7 489 29.2
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 3.7e-45 188.0 507 28.0
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 6.0e-43 180.6 369 32.2
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 3.0e-42 178.3 522 28.0
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 6.6e-42 177.2 472 29.0
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 1.2e-40 172.9 338 32.5
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 6.2e-40 170.6 415 30.4
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 8.1e-40 170.2 455 30.1
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 1.1e-39 169.9 340 32.1
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 1.0e-34 153.3 346 28.9
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 1.7e-34 152.5 464 29.1
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 1.1e-33 149.8 451 29.0
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 7.3e-33 147.1 314 29.9
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 2.1e-32 145.6 313 30.0
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 1.8e-31 142.5 446 27.6
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 1.5e-30 139.4 255 32.9
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 4.4e-30 137.9 445 26.3
SEGI_23591 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 1.7e-29 136.0 255 33.7
BcaC05g29989 Brassica carinata HOM05D004384 ORTHO05D005797 5.4e-28 131.0 239 33.9
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 1.2e-27 129.8 224 35.3
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 1.3e-26 126.3 448 26.8
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 3.0e-26 125.2 446 26.5
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 1.9e-25 122.5 505 23.4
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 3.3e-25 121.7 405 25.4
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 6.9e-23 114.0 375 26.7
Sopen00g006590 Solanum pennellii HOM05D004384 ORTHO05D005797 1.0e-18 100.1 200 34.0
Sopen01g041750 Solanum pennellii HOM05D004384 ORTHO05D005797 1.0e-18 100.1 200 34.0
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 1.6e-16 92.8 353 24.9
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 4.8e-16 91.3 325 24.0
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 5.3e-15 87.8 252 28.2
Os11g0517800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D299849 2.0e-06 59.3 68 42.6


User provided reference genes

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